ClCG06G007950 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G007950
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	hypothetical protein chrM:11918-12241 FORWARD LENGTH=107
Location	CG_Chr06 : 10329361 .. 10329934 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGACGAGGGCAGGGACGAGGGCGGGGACGAGGAATCCCTACCCACCTCACCCCGCCCGATTACCAACCCTAATCAGAAGTGATCAGAGTTATAAATGTACTCCTTGTAAAGAACTCAAACGAGAAAATGGTATGATAATACGATATGATGACAATGTTGCAATTTTTATTGATCAAGAAGGAAATCCAAAAGGAACTTGAATATTTGGTGCAACTTCCTAACAATTGAGACAGCTAAATTTCACTAAAATAATTTCATTAGCACCTGAAGTATTATAAGATGAGACCATGAGATAGTTATAGTATTTGAATGAAACTAATTAGTAGATTGTGTATCCTTATATACCTTTTTAAATTCATAACTATTTAATAAAAAAGATTGTTGATTAGAGCAAAATTTAAATCTCTTCCTTTAGCTACTCAAAATTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGAAGCTTAGATACGGTTTCTCGATCGAAGATCCATGGCTCACAGACAATATCTCCCCATGGCCTTTCGCCTCTAAAAGTGTCCTTCCTTCTTAA

mRNA sequence

ATGGCAAGGACGAGGGCAGGGACGAGGGCGGGGACGAGGAATCCCTACCCACCTCACCCCGCCCGATTACCAACCCTAATCAGAAGTGATCAGAGTTATAAATGTACTCCTTGTAAAGAACTCAAACGAGAAAATGCTACTCAAAATTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGAAGCTTAGATACGGTTTCTCGATCGAAGATCCATGGCTCACAGACAATATCTCCCCATGGCCTTTCGCCTCTAAAAGTGTCCTTCCTTCTTAA

Coding sequence (CDS)

ATGGCAAGGACGAGGGCAGGGACGAGGGCGGGGACGAGGAATCCCTACCCACCTCACCCCGCCCGATTACCAACCCTAATCAGAAGTGATCAGAGTTATAAATGTACTCCTTGTAAAGAACTCAAACGAGAAAATGCTACTCAAAATTTTCAATTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGAAGCTTAGATACGGTTTCTCGATCGAAGATCCATGGCTCACAGACAATATCTCCCCATGGCCTTTCGCCTCTAAAAGTGTCCTTCCTTCTTAA

Protein sequence

MARTRAGTRAGTRNPYPPHPARLPTLIRSDQSYKCTPCKELKRENATQNFQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS

Homology

[Close]

BLAST of ClCG06G007950 vs. Swiss-Prot
Match: M030_ARATH (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-15
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 50 FQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          FQFAKF KSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 2  FQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPS 47

[Close]

BLAST of ClCG06G007950 vs. TrEMBL
Match: A0A161X3X2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024277 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-15
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 17 PPHPARLPTLIRSDQSYKCTPCKELKRENATQNFQFAKFEKSKERRLATKLRYGFSIEDP 76
          PP  +R P L  S         + +    ATQ FQFAKFEKSKERRLAT+L YGF I DP
Sbjct: 24 PPIRSRSPLLTES---------RLISLPLATQMFQFAKFEKSKERRLATELGYGFPIGDP 83

Query: 77 WLTDNISPWPFASKSVLPS 96
          W+TD ISPWPFAS+SVLPS
Sbjct: 84 WITDGISPWPFASESVLPS 93

[Close]

BLAST of ClCG06G007950 vs. TrEMBL
Match: M1BRB5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019855 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-15
Identity = 48/73 (65.75%), Postives = 55/73 (75.34%), Query Frame = 1


Query: 23  LPTLIRSDQSYKCTPCKELKRENATQNFQFAKFEKSKERRLATKLRYGFSIEDPWLTDNI 82
           L T IRS +S   T  + +    AT+ FQFAKFEKSKERRLAT+L YGF I DPW+TD I
Sbjct: 31  LQTPIRS-RSPLLTGSRLISLPLATKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGI 90

Query: 83  SPWPFASKSVLPS 96
           SPWPFAS+SVLPS
Sbjct: 91  SPWPFASESVLPS 102

[Close]

BLAST of ClCG06G007950 vs. TrEMBL
Match: Q5M9R1_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf138c PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 46 ATQNFQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          AT+ FQFAKFEKSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 44 ATKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPS 93

[Close]

BLAST of ClCG06G007950 vs. TrEMBL
Match: K4D065_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 46  ATQNFQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
           AT+ FQFAKFEKSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 53  ATKMFQFAKFEKSKERRLATELGYGFVIGDPWITDGISPWPFASESVLPS 102

[Close]

BLAST of ClCG06G007950 vs. TrEMBL
Match: K4D8H9_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 3.8e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 50 FQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          FQFAKFEKSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 2  FQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPS 47

[Close]

BLAST of ClCG06G007950 vs. TAIR10
Match: ATMG00030.1 (ATMG00030.1 hypothetical protein)

HSP 1 Score: 83.6 bits (205), Expect = 7.3e-17
Identity = 38/46 (82.61%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 50 FQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          FQFAKF KSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 2  FQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPS 47

[Close]

BLAST of ClCG06G007950 vs. NCBI nr
Match: gi|1021021973|gb|KZM80319.1| (hypothetical protein DCAR_031801 [Daucus carota subsp. sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-15
Identity = 48/79 (60.76%), Postives = 54/79 (68.35%), Query Frame = 1


Query: 17 PPHPARLPTLIRSDQSYKCTPCKELKRENATQNFQFAKFEKSKERRLATKLRYGFSIEDP 76
          PP  +R P L  S         + +    ATQ FQFAKFEKSKERRLAT+L YGF I DP
Sbjct: 24 PPIRSRSPLLTES---------RLISLPLATQMFQFAKFEKSKERRLATELGYGFPIGDP 83

Query: 77 WLTDNISPWPFASKSVLPS 96
          W+TD ISPWPFAS+SVLPS
Sbjct: 84 WITDGISPWPFASESVLPS 93

[Close]

BLAST of ClCG06G007950 vs. NCBI nr
Match: gi|57013900|ref|YP_173374.1| (hypothetical protein NitaMp027 [Nicotiana tabacum])

HSP 1 Score: 88.6 bits (218), Expect = 6.5e-15
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 46 ATQNFQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          AT+ FQFAKFEKSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 44 ATKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPS 93

[Close]

BLAST of ClCG06G007950 vs. NCBI nr
Match: gi|302143234|emb|CBI20529.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-14
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 50 FQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          FQFAKFEKSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 2  FQFAKFEKSKERRLATELGYGFLIGDPWITDGISPWPFASQSVLPS 47

[Close]

BLAST of ClCG06G007950 vs. NCBI nr
Match: gi|13449292|ref|NP_085475.1| (hypothetical protein ArthMp003 [Arabidopsis thaliana])

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13
Identity = 38/46 (82.61%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 50 FQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFASKSVLPS 96
          FQFAKF KSKERRLAT+L YGF I DPW+TD ISPWPFAS+SVLPS
Sbjct: 2  FQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPS 47

[Close]

BLAST of ClCG06G007950 vs. NCBI nr
Match: gi|1021026552|gb|KZM84339.1| (hypothetical protein DCAR_028367 [Daucus carota subsp. sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.3e-11
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1


Query: 50 FQFAKFEKSKERRLATKLRYGFSIEDPWLTDNISPWPFAS 90
          FQFAKFEKSKERRLAT+L YGF I DPW+TD ISPWPFAS
Sbjct: 2  FQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFAS 41

The following BLAST results are available for this feature:

BLAST of ClCG06G007950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
M030_ARATH	1.3e-15	82.61	Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of ClCG06G007950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A161X3X2_DAUCA	1.2e-15	60.76	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024277 PE=4 SV=1	[more]
M1BRB5_SOLTU	2.6e-15	65.75	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400019855 PE=4 SV=1	[more]
Q5M9R1_TOBAC	4.5e-15	82.00	Uncharacterized protein OS=Nicotiana tabacum GN=orf138c PE=4 SV=1	[more]
K4D065_SOLLC	5.9e-15	82.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
K4D8H9_SOLLC	3.8e-14	84.78	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of ClCG06G007950 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00030.1	7.3e-17	82.61	ATMG00030.1 hypothetical protein	[more]

BLAST of ClCG06G007950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021021973\|gb\|KZM80319.1\|	1.7e-15	60.76	hypothetical protein DCAR_031801 [Daucus carota subsp. sativus]	[more]
gi\|57013900\|ref\|YP_173374.1\|	6.5e-15	82.00	hypothetical protein NitaMp027 [Nicotiana tabacum]	[more]
gi\|302143234\|emb\|CBI20529.3\|	7.1e-14	84.78	unnamed protein product [Vitis vinifera]	[more]
gi\|13449292\|ref\|NP_085475.1\|	2.1e-13	82.61	hypothetical protein ArthMp003 [Arabidopsis thaliana]	[more]
gi\|1021026552\|gb\|KZM84339.1\|	3.3e-11	85.00	hypothetical protein DCAR_028367 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G007950.1	ClCG06G007950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37773	FAMILY NOT NAMED	coord: 46..95 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G007950	Cucumber (Gy14) v1	cgywcgB352
ClCG06G007950	Cucumber (Gy14) v1	cgywcgB452
ClCG06G007950	Cucurbita maxima (Rimu)	cmawcgB235
ClCG06G007950	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G007950	Cucurbita maxima (Rimu)	cmawcgB802
ClCG06G007950	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G007950	Cucurbita moschata (Rifu)	cmowcgB221
ClCG06G007950	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G007950	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G007950	Cucurbita moschata (Rifu)	cmowcgB797
ClCG06G007950	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G007950	Wild cucumber (PI 183967)	cpiwcgB150
ClCG06G007950	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G007950	Cucumber (Chinese Long) v2	cuwcgB147
ClCG06G007950	Melon (DHL92) v3.5.1	mewcgB388
ClCG06G007950	Melon (DHL92) v3.5.1	mewcgB441
ClCG06G007950	Watermelon (97103) v1	wcgwmB331
ClCG06G007950	Watermelon (97103) v1	wcgwmB344
ClCG06G007950	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G007950	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G007950	Cucurbita pepo (Zucchini)	cpewcgB303
ClCG06G007950	Cucurbita pepo (Zucchini)	cpewcgB561
ClCG06G007950	Cucurbita pepo (Zucchini)	cpewcgB788
ClCG06G007950	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G007950	Bottle gourd (USVL1VR-Ls)	lsiwcgB343
ClCG06G007950	Cucumber (Gy14) v2	cgybwcgB138
ClCG06G007950	Cucumber (Gy14) v2	cgybwcgB230
ClCG06G007950	Melon (DHL92) v3.6.1	medwcgB378
ClCG06G007950	Melon (DHL92) v3.6.1	medwcgB437
ClCG06G007950	Silver-seed gourd	carwcgB0221
ClCG06G007950	Silver-seed gourd	carwcgB0936
ClCG06G007950	Silver-seed gourd	carwcgB1046
ClCG06G007950	Silver-seed gourd	carwcgB1049
ClCG06G007950	Cucumber (Chinese Long) v3	cucwcgB155
ClCG06G007950	Cucumber (Chinese Long) v3	cucwcgB254
ClCG06G007950	Watermelon (97103) v2	wcgwmbB269
ClCG06G007950	Watermelon (97103) v2	wcgwmbB273
ClCG06G007950	Wax gourd	wcgwgoB503
ClCG06G007950	Wax gourd	wcgwgoB525
ClCG06G007950	Watermelon (Charleston Gray)	wcgwcgB160