ClCG06G007570 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G007570
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Plant self-incompatibility protein S1 family LENGTH=151
Location	CG_Chr06 : 9404625 .. 9405015 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTCATTCTCAACATTTGCACTATGCCTTTTGATATTAGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAAATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGTTAGTTACGCCTTTAATTTTTGACCAAACTTCTTTAGTACCTTCCAATGGCCTGGTTGGTCACATTACTTCGATATTTACAAGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTGGGTGAACAAGGCATCTGTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA

mRNA sequence

ATGGGTTCATTCTCAACATTTGCACTATGCCTTTTGATATTAGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAAATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGTTATACCTTCCAATGGCCTGGTTGGTCACATTACTTCGATATTTACAAGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTGGGTGAACAAGGCATCTGTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA

Coding sequence (CDS)

ATGGGTTCATTCTCAACATTTGCACTATGCCTTTTGATATTAGTGTTTTTCACTAGCCTATTCACAATTGAAGGAAAACCCTTCCAATCCCCACTGGTTAACGTTAACATAACAAATGCTCTAAAAGGTAAACTAACTGTTCACTGCAAATCTGCCGATGATGACTTTGGATTCCACCAACTCCCACCATTGGTTATACCTTCCAATGGCCTGGTTGGTCACATTACTTCGATATTTACAAGGATGCAAAAGATAGAGATTGTTGCAATGAACCTCTTTGTGGGTGAACAAGGCATCTGTATGTTCAACAATGGCACCAAAAAGTATGATATTTGCTATACATGGTTGGTTAAATGA

Protein sequence

MGSFSTFALCLLILVFFTSLFTIEGKPFQSPLVNVNITNALKGKLTVHCKSADDDFGFHQLPPLVIPSNGLVGHITSIFTRMQKIEIVAMNLFVGEQGICMFNNGTKKYDICYTWLVK

Homology

[Close]

BLAST of ClCG06G007570 vs. TrEMBL
Match: A0A0A0LI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.8e-20
Identity = 62/139 (44.60%), Postives = 75/139 (53.96%), Query Frame = 1


Query: 1   MGSFSTFALCLLILVFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFG 60
           M SFSTF L L I + F ++FTIEGKPFQSP V VNITNALK    +LT+HCKS DDD G
Sbjct: 42  MSSFSTFGLSLFISLLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLG 101

Query: 61  FHQLPPLVIPS--------NGLVGHITSIFTRMQKIEIVAMNL-------------FVGE 116
            HQL  L   +           + +    +T       +  +L              VGE
Sbjct: 102 VHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGE 161

[Close]

BLAST of ClCG06G007570 vs. NCBI nr
Match: gi|700206411|gb|KGN61530.1| (hypothetical protein Csa_2G162130 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 1.4e-19
Identity = 62/139 (44.60%), Postives = 75/139 (53.96%), Query Frame = 1


Query: 1   MGSFSTFALCLLILVFFTSLFTIEGKPFQSPLVNVNITNALK---GKLTVHCKSADDDFG 60
           M SFSTF L L I + F ++FTIEGKPFQSP V VNITNALK    +LT+HCKS DDD G
Sbjct: 42  MSSFSTFGLSLFISLLFATIFTIEGKPFQSPPVTVNITNALKDVNNQLTIHCKSGDDDLG 101

Query: 61  FHQLPPLVIPS--------NGLVGHITSIFTRMQKIEIVAMNL-------------FVGE 116
            HQL  L   +           + +    +T       +  +L              VGE
Sbjct: 102 VHQLSHLASYAFNFRPNFWGSTLFYCAFDWTGSSHYFNIYQDLRDRAKCNDTLCLWIVGE 161

[Close]

BLAST of ClCG06G007570 vs. NCBI nr
Match: gi|659090020|ref|XP_008445791.1| (PREDICTED: uncharacterized protein LOC103488715 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.7e-18
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 1  MGSFSTFALCLLILVFFTSLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGF 60
          MGSF+TFALCLLI VFF+SLF IEGKPFQ+P V VNITNAL  K +LTVHCKS DDD G 
Sbjct: 1  MGSFTTFALCLLISVFFSSLFIIEGKPFQNPPVIVNITNALTSKDQLTVHCKSGDDDLGV 60

Query: 61 HQLPPL 65
          HQL PL
Sbjct: 61 HQLQPL 66

[Close]

BLAST of ClCG06G007570 vs. NCBI nr
Match: gi|659090020|ref|XP_008445791.1| (PREDICTED: uncharacterized protein LOC103488715 [Cucumis melo])

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-02
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 1


Query: 94  VGEQGICMFNNGTKKYDICYTWLVK 119
           VGEQG+CMF+  TKKYD CYTW+ K
Sbjct: 116 VGEQGVCMFHYVTKKYDFCYTWVDK 140

HSP 2 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 61/142 (42.96%), Postives = 71/142 (50.00%), Query Frame = 1


Query: 1   MGSFSTFALCLLILVFFTSLFTIEGKPFQSPLVNVNITNALKG---KLTVHCKSADDDFG 60
           MGSFSTF L LLIL+FF+ L  IEG  FQ+  V VNITN LKG   KLT+H +S DDD G
Sbjct: 1   MGSFSTFILSLLILLFFSDLIIIEGSIFQNARVTVNITNTLKGINNKLTIHRRSDDDDLG 60

Query: 61  FHQLPPLVIPSNGLVGHITSIFTRMQKIEIVAMN---------------------LFVGE 119
            HQLP L   +     +           E +  +                       V E
Sbjct: 61  VHQLPHLASYAFSFQPNFWGTTLFYCSYEWLGFSHRFDTYKDGRDRVYCNRTLCLWIVSE 120

[Close]

BLAST of ClCG06G007570 vs. NCBI nr
Match: gi|659124055|ref|XP_008461966.1| (PREDICTED: uncharacterized protein LOC103500444 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 6.6e-17
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 7   FALCLLILVFFTSLFTIEGKPFQSPLVNVNITNAL--KGKLTVHCKSADDDFGFHQLPPL 65
           FALCLLI +FF+SLFTIEGKPFQ+PLV VNITNAL  K +LTVHCKS DDD G HQL PL
Sbjct: 60  FALCLLISIFFSSLFTIEGKPFQNPLVTVNITNALTHKDQLTVHCKSGDDDLGVHQLQPL 119

[Close]

BLAST of ClCG06G007570 vs. NCBI nr
Match: gi|659121602|ref|XP_008460741.1| (PREDICTED: uncharacterized protein LOC103499504 [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 8.0e-15
Identity = 56/131 (42.75%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 9   LCLLILVFFTSLFTIEGKPFQSPLVNVNITNALKG---KLTVHCKSADDDFGFHQLPPLV 68
           L L I + F ++FTI+GK FQS  V VNITNALKG   +LT+HCKS DDD G HQL  L 
Sbjct: 8   LSLFISLIFVTIFTIDGKVFQSQPVTVNITNALKGVNNQLTIHCKSGDDDLGVHQLSHLA 67

Query: 69  IPSNGLVGHI--TSIF------TRMQKIEIVAMNL-------------FVGEQGICMFNN 116
             +     +   T++F      T       +  ++              VGEQGICMF+ 
Sbjct: 68  SYAFNFRPNFWGTTLFYCNFQWTGFSHYFDIYKDIRDREKCNYTLCLWIVGEQGICMFDY 127

The following BLAST results are available for this feature:

BLAST of ClCG06G007570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI28_CUCSA	9.8e-20	44.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1	[more]

BLAST of ClCG06G007570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206411\|gb\|KGN61530.1\|	1.4e-19	44.60	hypothetical protein Csa_2G162130 [Cucumis sativus]	[more]
gi\|659090020\|ref\|XP_008445791.1\|	2.7e-18	77.27	PREDICTED: uncharacterized protein LOC103488715 [Cucumis melo]	[more]
gi\|659090020\|ref\|XP_008445791.1\|	4.6e-02	72.00	PREDICTED: uncharacterized protein LOC103488715 [Cucumis melo]	[more]
gi\|659124055\|ref\|XP_008461966.1\|	6.6e-17	78.33	PREDICTED: uncharacterized protein LOC103500444 [Cucumis melo]	[more]
gi\|659121602\|ref\|XP_008460741.1\|	8.0e-15	42.75	PREDICTED: uncharacterized protein LOC103499504 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010264	Self-incomp_S1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G007570.1	ClCG06G007570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 35..63 score: 4.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G007570	Wax gourd	wcgwgoB503
ClCG06G007570	Watermelon (Charleston Gray)	wcgwcgB160
ClCG06G007570	Cucumber (Gy14) v1	cgywcgB452
ClCG06G007570	Cucurbita maxima (Rimu)	cmawcgB235
ClCG06G007570	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G007570	Cucurbita maxima (Rimu)	cmawcgB565
ClCG06G007570	Cucurbita maxima (Rimu)	cmawcgB745
ClCG06G007570	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G007570	Cucurbita moschata (Rifu)	cmowcgB221
ClCG06G007570	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G007570	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G007570	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G007570	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G007570	Cucumber (Chinese Long) v2	cuwcgB153
ClCG06G007570	Cucumber (Chinese Long) v2	cuwcgB246
ClCG06G007570	Melon (DHL92) v3.5.1	mewcgB388
ClCG06G007570	Melon (DHL92) v3.5.1	mewcgB441
ClCG06G007570	Watermelon (97103) v1	wcgwmB325
ClCG06G007570	Watermelon (97103) v1	wcgwmB331
ClCG06G007570	Watermelon (97103) v1	wcgwmB344
ClCG06G007570	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G007570	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G007570	Cucurbita pepo (Zucchini)	cpewcgB561
ClCG06G007570	Cucurbita pepo (Zucchini)	cpewcgB788
ClCG06G007570	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G007570	Bottle gourd (USVL1VR-Ls)	lsiwcgB343
ClCG06G007570	Cucumber (Gy14) v2	cgybwcgB143
ClCG06G007570	Cucumber (Gy14) v2	cgybwcgB230
ClCG06G007570	Melon (DHL92) v3.6.1	medwcgB378
ClCG06G007570	Melon (DHL92) v3.6.1	medwcgB437
ClCG06G007570	Silver-seed gourd	carwcgB0221
ClCG06G007570	Silver-seed gourd	carwcgB0227
ClCG06G007570	Silver-seed gourd	carwcgB0936
ClCG06G007570	Silver-seed gourd	carwcgB1046
ClCG06G007570	Cucumber (Chinese Long) v3	cucwcgB161
ClCG06G007570	Cucumber (Chinese Long) v3	cucwcgB254
ClCG06G007570	Watermelon (97103) v2	wcgwmbB269
ClCG06G007570	Watermelon (97103) v2	wcgwmbB273