ClCG06G005920 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G005920
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Aldose 1-epimerase
Location	CG_Chr06 : 6755337 .. 6755775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAGACAATCTTCACCTTCCATCCTCATGTCAAAACATGGGAAAGTTAGGGTTGTTCAAGGAACACCTTGTAATTTTTTGACAACCCAAATCATTGGCAACCATATGAAAAAAATTACCAAATGGGTTCGACATCTACTATGTGCTTGATGGATTAAAGGGGACAGAAAAGTAAAAAGCTGCTACTTTACGAGAGAGGAAGTCTGGACGAGTATTGAAATTATGGACTATTGTCGAAGGATTACAATTTTACACAAGCAAGGGTTCACACATGTGACATGAAAAGGACAGTTTGTCTATGAAACTCATGTGGAACTTTGTTTGAAGACTCAAAGATTTCTTAATGTGGTGAACCATCCAAATTTTGCTTTACATATTGTTACGAAAGAAAACCCTTATGAACACTCAATGTTGTTTAAGTTTTCAACCAAATAA

mRNA sequence

ATGGAAAAGACAATCTTCACCTTCCATCCTCATGTCAAAACATGGGAAAGGGACAGAAAAGTAAAAAGCTGCTACTTTACGAGAGAGGAAGTCTGGACGAGTATTGAAATTATGGACTATTGTCGAAGGATTACAATTTTACACAAGCAAGGGTTCACACATTTTGTCTATGAAACTCATGTGGAACTTTGTTTGAAGACTCAAAGATTTCTTAATGTGGTGAACCATCCAAATTTTGCTTTACATATTGTTACGAAAGAAAACCCTTATGAACACTCAATGTTGTTTAAGTTTTCAACCAAATAA

Coding sequence (CDS)

ATGGAAAAGACAATCTTCACCTTCCATCCTCATGTCAAAACATGGGAAAGGGACAGAAAAGTAAAAAGCTGCTACTTTACGAGAGAGGAAGTCTGGACGAGTATTGAAATTATGGACTATTGTCGAAGGATTACAATTTTACACAAGCAAGGGTTCACACATTTTGTCTATGAAACTCATGTGGAACTTTGTTTGAAGACTCAAAGATTTCTTAATGTGGTGAACCATCCAAATTTTGCTTTACATATTGTTACGAAAGAAAACCCTTATGAACACTCAATGTTGTTTAAGTTTTCAACCAAATAA

Protein sequence

MEKTIFTFHPHVKTWERDRKVKSCYFTREEVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENPYEHSMLFKFSTK

Homology

[Close]

BLAST of ClCG06G005920 vs. TrEMBL
Match: A0A0A0KBU6_CUCSA (Aldose 1-epimerase OS=Cucumis sativus GN=Csa_6G153465 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.5e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E+WT+ + + +     + +  G   FVYE H  LC++TQ F + VNHPNF  HIVTKE+P
Sbjct: 287 ELWTNADGLQFYTGNWLRNLTGKGGFVYEAHAGLCMETQGFPDAVNHPNFPSHIVTKESP 346

Query: 90  YEHSMLFKFSTK 102
           YEHSMLFKFST+
Sbjct: 347 YEHSMLFKFSTE 358

[Close]

BLAST of ClCG06G005920 vs. TrEMBL
Match: M5WVL2_PRUPE (Aldose 1-epimerase OS=Prunus persica GN=PRUPE_ppa024124mg PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-09
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 55  FVYETHVELCLKTQRFLNVVNHPNFALHIVTKENPYEHSMLFKFSTK 102
           FVYE H  LCL+TQ F + VNHPNF   IVT + PY+H+MLFKFSTK
Sbjct: 315 FVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNMLFKFSTK 361

[Close]

BLAST of ClCG06G005920 vs. TrEMBL
Match: A0A0L9U221_PHAAN (Aldose 1-epimerase OS=Phaseolus angularis GN=LR48_Vigan03g025900 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.7e-09
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E++T+   + +     I + +G   FVY  H  LCL+TQ F + VNHPNF   IVT E P
Sbjct: 290 ELYTNAPGLQFYSGNYIKNLKGKGGFVYNAHAGLCLETQAFPDSVNHPNFPSTIVTPEKP 349

Query: 90  YEHSMLFKFSTK 102
           Y H MLFKFSTK
Sbjct: 350 YNHYMLFKFSTK 361

[Close]

BLAST of ClCG06G005920 vs. TrEMBL
Match: A0A0S3RRX4_PHAAN (Aldose 1-epimerase OS=Vigna angularis var. angularis GN=Vigan.04G052600 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.7e-09
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E++T+   + +     I + +G   FVY  H  LCL+TQ F + VNHPNF   IVT E P
Sbjct: 290 ELYTNAPGLQFYSGNYIKNLKGKGGFVYNAHAGLCLETQAFPDSVNHPNFPSTIVTPEKP 349

Query: 90  YEHSMLFKFSTK 102
           Y H MLFKFSTK
Sbjct: 350 YNHYMLFKFSTK 361

[Close]

BLAST of ClCG06G005920 vs. TrEMBL
Match: G7KZW8_MEDTR (Aldose 1-epimerase OS=Medicago truncatula GN=MTR_7g009930 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-08
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E++T+   + +     I   +G + +VY+ H  LCL++Q F + VNHPNF   IVT E P
Sbjct: 289 ELYTNAPGLQFYTGNYIKDVKGKSGYVYKAHAGLCLESQAFPDSVNHPNFPSTIVTPEKP 348

Query: 90  YEHSMLFKFSTK 102
           Y+H MLFKFSTK
Sbjct: 349 YKHYMLFKFSTK 360

[Close]

BLAST of ClCG06G005920 vs. TAIR10
Match: AT3G17940.1 (AT3G17940.1 Galactose mutarotase-like superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.7e-06
Identity = 24/69 (34.78%), Postives = 35/69 (50.72%), Query Frame = 1


Query: 31  VWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENPY 90
           +WT++  M +     +    G  + VY  H  +CL+TQ F N +N  NF   +V     Y
Sbjct: 272 LWTNVPGMQFYTGNYVNGVVGKGNAVYGKHAGVCLETQGFPNAINQSNFPSVVVKAGEKY 331

Query: 91  EHSMLFKFS 100
            H+MLF+FS
Sbjct: 332 NHTMLFEFS 340

[Close]

BLAST of ClCG06G005920 vs. TAIR10
Match: AT5G15140.1 (AT5G15140.1 Galactose mutarotase-like superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 8.1e-06
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 1


Query: 56  VYETHVELCLKTQRFLNVVNHPNFALHIVTKENPYEHSMLFKFS 100
           VY+    LCL+TQ + + +NHP F   IV     Y+H+MLFKFS
Sbjct: 444 VYQAFGGLCLETQSYPDALNHPKFPSQIVEPGKKYKHTMLFKFS 487

[Close]

BLAST of ClCG06G005920 vs. NCBI nr
Match: gi|700191759|gb|KGN46963.1| (hypothetical protein Csa_6G153465 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 6.4e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E+WT+ + + +     + +  G   FVYE H  LC++TQ F + VNHPNF  HIVTKE+P
Sbjct: 287 ELWTNADGLQFYTGNWLRNLTGKGGFVYEAHAGLCMETQGFPDAVNHPNFPSHIVTKESP 346

Query: 90  YEHSMLFKFSTK 102
           YEHSMLFKFST+
Sbjct: 347 YEHSMLFKFSTE 358

[Close]

BLAST of ClCG06G005920 vs. NCBI nr
Match: gi|645249415|ref|XP_008230742.1| (PREDICTED: aldose 1-epimerase-like [Prunus mume])

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-09
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 55  FVYETHVELCLKTQRFLNVVNHPNFALHIVTKENPYEHSMLFKFSTK 102
           FVYE H  LCL+TQ F + VNHPNF   IVT + PY+H+MLFKFSTK
Sbjct: 315 FVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNMLFKFSTK 361

[Close]

BLAST of ClCG06G005920 vs. NCBI nr
Match: gi|595953365|ref|XP_007216505.1| (hypothetical protein PRUPE_ppa024124mg [Prunus persica])

HSP 1 Score: 68.9 bits (167), Expect = 5.6e-09
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 55  FVYETHVELCLKTQRFLNVVNHPNFALHIVTKENPYEHSMLFKFSTK 102
           FVYE H  LCL+TQ F + VNHPNF   IVT + PY+H+MLFKFSTK
Sbjct: 315 FVYEPHAALCLETQGFPDAVNHPNFPSTIVTPKKPYKHNMLFKFSTK 361

[Close]

BLAST of ClCG06G005920 vs. NCBI nr
Match: gi|920693653|gb|KOM36878.1| (hypothetical protein LR48_Vigan03g025900 [Vigna angularis])

HSP 1 Score: 68.2 bits (165), Expect = 9.6e-09
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E++T+   + +     I + +G   FVY  H  LCL+TQ F + VNHPNF   IVT E P
Sbjct: 290 ELYTNAPGLQFYSGNYIKNLKGKGGFVYNAHAGLCLETQAFPDSVNHPNFPSTIVTPEKP 349

Query: 90  YEHSMLFKFSTK 102
           Y H MLFKFSTK
Sbjct: 350 YNHYMLFKFSTK 361

[Close]

BLAST of ClCG06G005920 vs. NCBI nr
Match: gi|357501747|ref|XP_003621162.1| (aldose 1-epimerase family protein [Medicago truncatula])

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-08
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 30  EVWTSIEIMDYCRRITILHKQGFTHFVYETHVELCLKTQRFLNVVNHPNFALHIVTKENP 89
           E++T+   + +     I   +G + +VY+ H  LCL++Q F + VNHPNF   IVT E P
Sbjct: 289 ELYTNAPGLQFYTGNYIKDVKGKSGYVYKAHAGLCLESQAFPDSVNHPNFPSTIVTPEKP 348

Query: 90  YEHSMLFKFSTK 102
           Y+H MLFKFSTK
Sbjct: 349 YKHYMLFKFSTK 360

The following BLAST results are available for this feature:

BLAST of ClCG06G005920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU6_CUCSA	4.5e-13	52.78	Aldose 1-epimerase OS=Cucumis sativus GN=Csa_6G153465 PE=3 SV=1	[more]
M5WVL2_PRUPE	3.9e-09	65.96	Aldose 1-epimerase OS=Prunus persica GN=PRUPE_ppa024124mg PE=3 SV=1	[more]
A0A0L9U221_PHAAN	6.7e-09	48.61	Aldose 1-epimerase OS=Phaseolus angularis GN=LR48_Vigan03g025900 PE=3 SV=1	[more]
A0A0S3RRX4_PHAAN	6.7e-09	48.61	Aldose 1-epimerase OS=Vigna angularis var. angularis GN=Vigan.04G052600 PE=3 SV=...	[more]
G7KZW8_MEDTR	1.9e-08	45.83	Aldose 1-epimerase OS=Medicago truncatula GN=MTR_7g009930 PE=3 SV=1	[more]

BLAST of ClCG06G005920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17940.1	4.7e-06	34.78	Galactose mutarotase-like superfamily protein	[more]
AT5G15140.1	8.1e-06	47.73	Galactose mutarotase-like superfamily protein	[more]

BLAST of ClCG06G005920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191759\|gb\|KGN46963.1\|	6.4e-13	52.78	hypothetical protein Csa_6G153465 [Cucumis sativus]	[more]
gi\|645249415\|ref\|XP_008230742.1\|	5.6e-09	65.96	PREDICTED: aldose 1-epimerase-like [Prunus mume]	[more]
gi\|595953365\|ref\|XP_007216505.1\|	5.6e-09	65.96	hypothetical protein PRUPE_ppa024124mg [Prunus persica]	[more]
gi\|920693653\|gb\|KOM36878.1\|	9.6e-09	48.61	hypothetical protein LR48_Vigan03g025900 [Vigna angularis]	[more]
gi\|357501747\|ref\|XP_003621162.1\|	2.8e-08	45.83	aldose 1-epimerase family protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011013	Gal_mutarotase_sf_dom
IPR014718	GH-type_carb-bd

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0030246	carbohydrate binding

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G005920.1	ClCG06G005920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011013	Galactose mutarotase-like domain	unknown	SSF74650	Galactose mutarotase-like	coord: 20..99 score: 8.6
IPR014718	Glycoside hydrolase-type carbohydrate-binding	GENE3D	G3DSA:2.70.98.10		coord: 50..100 score: 2.
None	No IPR available	PANTHER	PTHR10091	ALDOSE-1-EPIMERASE	coord: 55..101 score: 1.2
None	No IPR available	PANTHER	PTHR10091:SF10	ALDOSE 1-EPIMERASE-RELATED	coord: 55..101 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G005920	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G005920	Bottle gourd (USVL1VR-Ls)	lsiwcgB202
ClCG06G005920	Bottle gourd (USVL1VR-Ls)	lsiwcgB344
ClCG06G005920	Bottle gourd (USVL1VR-Ls)	lsiwcgB345
ClCG06G005920	Cucumber (Gy14) v2	cgybwcgB230
ClCG06G005920	Melon (DHL92) v3.6.1	medwcgB209
ClCG06G005920	Melon (DHL92) v3.6.1	medwcgB437
ClCG06G005920	Silver-seed gourd	carwcgB0073
ClCG06G005920	Silver-seed gourd	carwcgB0217
ClCG06G005920	Silver-seed gourd	carwcgB0318
ClCG06G005920	Silver-seed gourd	carwcgB0589
ClCG06G005920	Silver-seed gourd	carwcgB0729
ClCG06G005920	Cucumber (Chinese Long) v3	cucwcgB254
ClCG06G005920	Cucumber (Chinese Long) v3	cucwcgB592
ClCG06G005920	Watermelon (97103) v2	wcgwmbB269
ClCG06G005920	Watermelon (97103) v2	wcgwmbB273
ClCG06G005920	Watermelon (97103) v2	wcgwmbB275
ClCG06G005920	Watermelon (97103) v2	wcgwmbB277
ClCG06G005920	Wax gourd	wcgwgoB492
ClCG06G005920	Wax gourd	wcgwgoB521
ClCG06G005920	Wax gourd	wcgwgoB526
ClCG06G005920	Wax gourd	wcgwgoB535
ClCG06G005920	Watermelon (Charleston Gray)	wcgwcgB027
ClCG06G005920	Watermelon (Charleston Gray)	wcgwcgB160
ClCG06G005920	Watermelon (Charleston Gray)	wcgwcgB174
ClCG06G005920	Cucumber (Gy14) v1	cgywcgB092
ClCG06G005920	Cucumber (Gy14) v1	cgywcgB453
ClCG06G005920	Cucurbita maxima (Rimu)	cmawcgB236
ClCG06G005920	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G005920	Cucurbita maxima (Rimu)	cmawcgB745
ClCG06G005920	Cucurbita maxima (Rimu)	cmawcgB804
ClCG06G005920	Cucurbita moschata (Rifu)	cmowcgB222
ClCG06G005920	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G005920	Cucurbita moschata (Rifu)	cmowcgB746
ClCG06G005920	Cucurbita moschata (Rifu)	cmowcgB799
ClCG06G005920	Cucurbita moschata (Rifu)	cmowcgB804
ClCG06G005920	Wild cucumber (PI 183967)	cpiwcgB255
ClCG06G005920	Wild cucumber (PI 183967)	cpiwcgB593
ClCG06G005920	Cucumber (Chinese Long) v2	cuwcgB247
ClCG06G005920	Cucumber (Chinese Long) v2	cuwcgB562
ClCG06G005920	Melon (DHL92) v3.5.1	mewcgB217
ClCG06G005920	Melon (DHL92) v3.5.1	mewcgB442
ClCG06G005920	Watermelon (97103) v1	wcgwmB315
ClCG06G005920	Watermelon (97103) v1	wcgwmB324
ClCG06G005920	Watermelon (97103) v1	wcgwmB332
ClCG06G005920	Watermelon (97103) v1	wcgwmB344
ClCG06G005920	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G005920	Cucurbita pepo (Zucchini)	cpewcgB239
ClCG06G005920	Cucurbita pepo (Zucchini)	cpewcgB294
ClCG06G005920	Cucurbita pepo (Zucchini)	cpewcgB562
ClCG06G005920	Cucurbita pepo (Zucchini)	cpewcgB788