ClCG06G005730 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CATCTTCCACTCGCACTTCACATAGAGAGAGAGAGAGAGGAATGGAACTGAGCTAGAAGCCCAGAGCGACCTTGAAGCTGAAGCTCCCTAGATTCGACTGTCTGTTTCATAATCACACGACAGTTGTAAGTTGTTTTCTTGCTCTCGTTTGTCTTTGATTTCGCTGCTTACAATCGGAACTTTGATTGGAGTTTGGTTTCATTAAGGCTCCGTTTCACTTTAGAAATTTGTGCTTAGTTTTCATCTAATAGTGACGGAATGATAAAATATAAGGAATACTGTTGGGAATTTGAGTTTACGAATGAGGAGAACAGAGTATTACCGAAATTCGAGTACAAAAGTGATTCTGAACTTGAAATCGTCGAGTCGAAGAGGCTATCATCTCGTTGAGATAGGAATTTTGCCGTTGAAAATTATGAATCTACTGTTTTTTTTTCCTTTTTCCTTTTTTCATTTATTTCTCAATTTCTTGTTCGTTTGCTGCATGCTTTTCGGCAACCGGTGATAGACCTTTATAGAGCCTCTGTTTTGGATCTATGGACATTGCAGAGGGTTGGAATTCGTATAGAGTAAATGGAATCAGATAGATGGAGTTTGTAACGAGTATCTGGTGTATTTATTATGCTATTTTCTTGTCATAGTTTAGTATCTCTTATTATATTATCTAGAATCCCCTGTAATGTATAGTAGATCGGTTGTATGGATCTCTGAGAATTTTTTGTCAATATTAAATAACCCTCCATCTGGCATGCTGGAGCTTTTCAATGATTTTGAGGTGCTAGGAATTTCGGGTTGCTTAGGATTCGAACTGGGTAATATTGTAACCTTCTCAAGGGTTATGTCTTCGAATCTTTGGACGAGCTTAATAAGTAAAGCACTTGAAGCAGGCTTGAATTTTCTTTTCTTCTTTTTAAATGGAGGAGCCGCGTATATCATGGAACTTCCTGGAATAGATATAGTTAAGAATCTCCTGATGCTGCTGTGTGGTATAAGTAGGAGCGAATTATTTTGTTTTCCTTTTCTTTCTAATTTTCTCCCCTTTTCCGGCGACAGGATAGGTTTTGAAGGATGCAATCAAAACCAGAAAATGTAGACCAACAAGTAGCTGATAGGGCGAAGTATTTGCTACAATCGACTAAATACTCTGAGCCTTGGTGGCATGGAGTTGGGAACAATACAATCGCAGGTGAAAAAGCTGCTAAAACATCTTCTGCAGAATACCTGAACGTTACTGTTACCAGTGGAGCAACGCAGTCACAAGCAAATGGTATAAGATGCCCTTTCTGTAAAGTGAATGTCTTACAATTATTATTAATTTACTATATTTGTCTATGATTAGGCAATTTAAGTGATAAATCGAAACTCTTCTTGGTTCAGATGAAAATATTGGGAAAGAAGTCCAGCATGTCAAGTACATTCCGTTTACTACATCCCCACCCGTGGGCGAACACCTGGATCTAAATTCCCAAATGGAACTTGTAGGCCACTCAATTGTAAGAATTGTCTGTCTCTCTCTCAAACCATTGTAAACGAAGAAAAAAACATGAGTAGTGTGCCTAGTTCTTTATTTGTGGGCAGATGCTTGACTTTTTGGACATTGCTTCCCTCTTAACTGGATACAAAAAGGACTTCAAGTATCTCCATTTGCAGGTTTTGACATCATATCCTTTTTCTGATGCACAATATTGTCAAATGCTGGCTTCTTATGGACCACAATCA CATCTTCCACTCGCACTTCACATAGAGAGAGAGAGAGAGGAATGGAACTGAGCTAGAAGCCCAGAGCGACCTTGAAGCTGAAGCTCCCTAGATTCGACTGTCTGTTTCATAATCACACGACAGTTGATAGGTTTTGAAGGATGCAATCAAAACCAGAAAATGTAGACCAACAAGTAGCTGATAGGGCGAAGTATTTGCTACAATCGACTAAATACTCTGAGCCTTGGTGGCATGGAGTTGGGAACAATACAATCGCAGGTGAAAAAGCTGCTAAAACATCTTCTGCAGAATACCTGAACGTTACTGTTACCAGTGGAGCAACGCAGTCACAAGCAAATGATGAAAATATTGGGAAAGAAGTCCAGCATGTCAAGTACATTCCGTTTACTACATCCCCACCCGTGGGCGAACACCTGGATCTAAATTCCCAAATGGAACTTGTAGGCCACTCAATTGTTTTGACATCATATCCTTTTTCTGATGCACAATATTGTCAAATGCTGGCTTCTTATGGACCACAATCA ATGCAATCAAAACCAGAAAATGTAGACCAACAAGTAGCTGATAGGGCGAAGTATTTGCTACAATCGACTAAATACTCTGAGCCTTGGTGGCATGGAGTTGGGAACAATACAATCGCAGGTGAAAAAGCTGCTAAAACATCTTCTGCAGAATACCTGAACGTTACTGTTACCAGTGGAGCAACGCAGTCACAAGCAAATGATGAAAATATTGGGAAAGAAGTCCAGCATGTCAAGTACATTCCGTTTACTACATCCCCACCCGTGGGCGAACACCTGGATCTAAATTCCCAAATGGAACTTGTAGGCCACTCAATTGTTTTGACATCATATCCTTTTTCTGATGCACAATATTGTCAAATGCTGGCTTCTTATGGACCACAATCA MQSKPENVDQQVADRAKYLLQSTKYSEPWWHGVGNNTIAGEKAAKTSSAEYLNVTVTSGATQSQANDENIGKEVQHVKYIPFTTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYCQMLASYGPQS
BLAST of ClCG06G005730 vs. TrEMBL
Match: A0A0A0K612_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G428130 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 1.1e-61 Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1
BLAST of ClCG06G005730 vs. TrEMBL
Match: A0A0B0PEQ5_GOSAR (Nuclear transcription factor Y subunit A-1-like protein OS=Gossypium arboreum GN=F383_01510 PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 5.1e-30 Identity = 74/133 (55.64%), Postives = 91/133 (68.42%), Query Frame = 1
BLAST of ClCG06G005730 vs. TrEMBL
Match: A0A0D2PDJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G172100 PE=4 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 8.7e-30 Identity = 74/133 (55.64%), Postives = 91/133 (68.42%), Query Frame = 1
BLAST of ClCG06G005730 vs. TrEMBL
Match: A0A061DWD2_THECC (Nuclear transcription factor Y subunit A-1, putative isoform 1 OS=Theobroma cacao GN=TCM_005875 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28 Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = 1
BLAST of ClCG06G005730 vs. TrEMBL
Match: A0A061E368_THECC (Nuclear transcription factor Y subunit A-1, putative isoform 2 OS=Theobroma cacao GN=TCM_005875 PE=4 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28 Identity = 69/134 (51.49%), Postives = 92/134 (68.66%), Query Frame = 1
BLAST of ClCG06G005730 vs. NCBI nr
Match: gi|659122737|ref|XP_008461297.1| (PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis melo]) HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62 Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 1
BLAST of ClCG06G005730 vs. NCBI nr
Match: gi|449436305|ref|XP_004135933.1| (PREDICTED: nuclear transcription factor Y subunit A-4 [Cucumis sativus]) HSP 1 Score: 243.8 bits (621), Expect = 1.6e-61 Identity = 117/128 (91.41%), Postives = 122/128 (95.31%), Query Frame = 1
BLAST of ClCG06G005730 vs. NCBI nr
Match: gi|728845480|gb|KHG24923.1| (Nuclear transcription factor Y subunit A-1 -like protein [Gossypium arboreum]) HSP 1 Score: 138.7 bits (348), Expect = 7.3e-30 Identity = 74/133 (55.64%), Postives = 91/133 (68.42%), Query Frame = 1
BLAST of ClCG06G005730 vs. NCBI nr
Match: gi|823151231|ref|XP_012475442.1| (PREDICTED: nuclear transcription factor Y subunit A-4-like [Gossypium raimondii]) HSP 1 Score: 137.9 bits (346), Expect = 1.3e-29 Identity = 74/133 (55.64%), Postives = 91/133 (68.42%), Query Frame = 1
BLAST of ClCG06G005730 vs. NCBI nr
Match: gi|1009129329|ref|XP_015881708.1| (PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Ziziphus jujuba]) HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28 Identity = 68/127 (53.54%), Postives = 86/127 (67.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |