ClCG06G003920 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G003920
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 4543022 .. 4543986 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAGGTGATGGTTATGTTTTGAATCGTCAATTGAAGATGTTTGTTTCGGGTCACAGCGATGTAAAGCAACAAATTGATTATTCAATTTTTGTTTCAATTGATTCAAATGAATTCAAACGCATTCTAGAGCATAATGTTTTCTTAGGTTGATATTTTTTTTTTCTTTAATTCCTTTTCTTGGATTATTCCTCGGAAGAAAATGGTTGTGATTTTCTTTAAATTGATTTGTTGCAGTTCATGTTACTCTCACAAATTCACAAGTCAAATTCTCTGGACCAATTGCAGAGATTATTCTTACCACTAAGGTAAGGTTAATCAGAATATTAAATGAATAATTGAAAAATAAGATTTGTATATAAAAGTATAGAAATTCATGAATAAAGATTTGTATTTGATAAAACGATAGATAATTAATTAGTATATTTGCATTACTATTAGTTTAGTTATTAATTTTAGATTAATGTATGTTTATTTAAGTTGGTGTAATTAATTATTTCGTCTTATATATATTTTTTAAGTGTATAAATAGTCCACTTTAGTGTTATATATTTTTCACATAGCGAATTTCTTTGTGGTGGTTTGTAGTTTACTTCAGGTTTAGAGTTTTCCACGTAAATTCTTAATTTTGTCATTTTCATTAAAATTCTCGTGAATTTTCTTAATATGGTTTTTCCCTACATGGATTTTTCATTTTTTAGCTATAGATTTGGTATAATACCTTCGTATCAAACACATATTGAAAAAAAATGGTTGGGTGATGTTGTGCAGGAAAGAAAATGCATAATTGGAGGTCTTGCTGCAGGAGATGAAATTCAATTCCTAATCCCTTTCTCTTTTCATAGCTTTTATTTTGAATTGACAAATTGGTCAAAAAGAATTTGGTTATTCAAGTCAACTAATTCCTGGAGCATGATCACTGCACCTATTGGATTGTATGTTCGATATTCTATTTATTTTCCGGAA

mRNA sequence

TTTTAGGTGATGGTTATGTTTTGAATCGTCAATTGAAGATGTTTGTTTCGGGTCACAGCGATGTAAAGCAACAAATTGATTATTCAATTTTTGTTTCAATTGATTCAAATGAATTCAAACGCATTCTAGAGCATAATGTTTTCTTAGTTCATGTTACTCTCACAAATTCACAAGTCAAATTCTCTGGACCAATTGCAGAGATTATTCTTACCACTAAGATTAATGAAAGAAAATGCATAATTGGAGGTCTTGCTGCAGGAGATGAAATTCAATTCCTAATCCCTTTCTCTTTTCATAGCTTTTATTTTGAATTGACAAATTGGTCAAAAAGAATTTGGTTATTCAAGTCAACTAATTCCTGGAGCATGATCACTGCACCTATTGGATTGTATGTTCGATATTCTATTTATTTTCCGGAA

Coding sequence (CDS)

ATGTTTGTTTCGGGTCACAGCGATGTAAAGCAACAAATTGATTATTCAATTTTTGTTTCAATTGATTCAAATGAATTCAAACGCATTCTAGAGCATAATGTTTTCTTAGTTCATGTTACTCTCACAAATTCACAAGTCAAATTCTCTGGACCAATTGCAGAGATTATTCTTACCACTAAGATTAATGAAAGAAAATGCATAATTGGAGGTCTTGCTGCAGGAGATGAAATTCAATTCCTAATCCCTTTCTCTTTTCATAGCTTTTATTTTGAATTGACAAATTGGTCAAAAAGAATTTGGTTATTCAAGTCAACTAATTCCTGGAGCATGATCACTGCACCTATTGGATTGTATGTTCGATATTCTATTTATTTTCCGGAA

Protein sequence

MFVSGHSDVKQQIDYSIFVSIDSNEFKRILEHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGGLAAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNSWSMITAPIGLYVRYSIYFPE

Homology

[Close]

BLAST of ClCG06G003920 vs. TrEMBL
Match: A0A0A0KCY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.2e-17
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 12  QIDYSIFVSIDSNEFKRIL-EHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGG 71
           +IDY IF SIDS   + I  E + +   VTLTNS+VKFS    EI L  +++E  CIIGG
Sbjct: 46  EIDYGIFFSIDSLVLRFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDE--CIIGG 105

Query: 72  LAAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNSWSMITAPIGLYVRYSIYFPE 128
           +A  +E +F +  +    + +L N S+RIW+FKS NS+S+I APIGLY ++ +YFP+
Sbjct: 106 VADEEESRFFVYLNPKILFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQ 160

[Close]

BLAST of ClCG06G003920 vs. TrEMBL
Match: A0A0A0LLD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.1e-16
Identity = 49/116 (42.24%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 13  IDYSIFVSIDSNEFKRIL-EHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGGL 72
           +D+ IFVSIDS +F+ I+ E   ++V VT T+S V+F   + EII   K  E +CII G+
Sbjct: 42  VDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIF--KKEEGECIIEGV 101

Query: 73  AAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNS-WSMITAPIGLYVRYSIYFP 127
             G  ++FLIP      Y+ +T  ++R+WLFKS +   + I AP+GL+ +++IYFP
Sbjct: 102 GKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 155

[Close]

BLAST of ClCG06G003920 vs. TrEMBL
Match: A0A0A0KFM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-14
Identity = 51/117 (43.59%), Postives = 75/117 (64.10%), Query Frame = 1


Query: 12  QIDYSIFVSIDSNEFKRIL-EHNVF-LVHVTLTNSQVKFSGPIAEIILTTKINERKCIIG 71
           QID S FVS+DS EF  I+ E+++F  V V +T+ +V FS  I +  + T   + +C+IG
Sbjct: 135 QIDLSAFVSMDSEEFSNIISEYHMFDYVEVIITSRRVSFSYAIIQETIITP-EDGQCLIG 194

Query: 72  GLAAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNSW-SMITAPIGLYVRYSIYF 126
           G+ A +++QF+I  S  + +F   + SKRIWLFK  NS   +ITAP+GLY R   +F
Sbjct: 195 GVRAPNQVQFIITMSQPNAFFHFASQSKRIWLFKEVNSTKGIITAPLGLYGRLVSFF 250

[Close]

BLAST of ClCG06G003920 vs. TrEMBL
Match: A0A0A0K7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.7e-14
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 1


Query: 13  IDYSIFVSIDSNEFKRILEH-NVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGGL 72
           ID   FVSIDS +F+R++     + V VT T+S V+FS  I E I   +  E  CI+ G+
Sbjct: 129 IDLETFVSIDSQQFRRVVTGCRDYFVRVTTTHSHVRFSNEIKEFIFAREGGE--CIMEGV 188

Query: 73  AAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNS-WSMITAPIGLYVRYSIYFP 127
             G   +FLIP      ++ +T  +KR+WLFKS +   + I AP+GL+ R+ IYFP
Sbjct: 189 GKGKGTEFLIPIYPTHVFYNITFRAKRVWLFKSIDKLGTFIVAPVGLFARFVIYFP 242

[Close]

BLAST of ClCG06G003920 vs. TrEMBL
Match: A0A0A0KNE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 12  QIDYSIFVSIDSNEFKRI-LEHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGG 71
           +IDY  FVSIDS +FKR+ LE N   V V L++S+  FS    +II T    ERKCIIGG
Sbjct: 17  RIDYKAFVSIDSKDFKRVVLEINAHSVFVNLSDSEATFSNDNKKIIFTK--EERKCIIGG 76

Query: 72  LAAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNSWSMITAPIGLYVRYSIYF 126
           +  G E + LI      F+ +L+  ++R+WLF   +  +++  P GL+ ++ +YF
Sbjct: 77  IKKGKEYEVLITLHPLVFFLDLSYQAQRLWLFIQKDFSTILVFPSGLWTQFWVYF 129

[Close]

BLAST of ClCG06G003920 vs. NCBI nr
Match: gi|700190437|gb|KGN45641.1| (hypothetical protein Csa_6G002350 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 3.2e-17
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 1


Query: 12  QIDYSIFVSIDSNEFKRIL-EHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGG 71
           +IDY IF SIDS   + I  E + +   VTLTNS+VKFS    EI L  +++E  CIIGG
Sbjct: 46  EIDYGIFFSIDSLVLRFIATELDDYDALVTLTNSEVKFSVNDKEISLYKEVDE--CIIGG 105

Query: 72  LAAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNSWSMITAPIGLYVRYSIYFPE 128
           +A  +E +F +  +    + +L N S+RIW+FKS NS+S+I APIGLY ++ +YFP+
Sbjct: 106 VADEEESRFFVYLNPKILFRDLANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQ 160

[Close]

BLAST of ClCG06G003920 vs. NCBI nr
Match: gi|659117581|ref|XP_008458677.1| (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-16
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 1


Query: 12  QIDYSIFVSIDSNEFKRI-LEHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGG 71
           +IDY IF SI+S  F+ I +E + F   VTLTNS+VKFS    +IIL  + +E  CIIGG
Sbjct: 135 EIDYGIFFSIESLVFRFIAIELDDFDALVTLTNSEVKFSVNDKDIILYKERDE--CIIGG 194

Query: 72  LAAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNSWSMITAPIGLYVRYSIYFPE 128
           +  G+E +F +  +    + +L   S RIW+FKS  S+S+  APIGLY ++ +YFP+
Sbjct: 195 VEIGEESRFFVYLNPKVLFRDLAEQSARIWMFKSPRSYSITVAPIGLYAQFCVYFPQ 249

[Close]

BLAST of ClCG06G003920 vs. NCBI nr
Match: gi|778674138|ref|XP_011650141.1| (PREDICTED: uncharacterized protein LOC101209763 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 49/116 (42.24%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 13  IDYSIFVSIDSNEFKRIL-EHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGGL 72
           +D+ IFVSIDS +F+ I+ E   ++V VT T+S V+F   + EII   K  E +CII G+
Sbjct: 144 VDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIF--KKEEGECIIEGV 203

Query: 73  AAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNS-WSMITAPIGLYVRYSIYFP 127
             G  ++FLIP      Y+ +T  ++R+WLFKS +   + I AP+GL+ +++IYFP
Sbjct: 204 GKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 257

[Close]

BLAST of ClCG06G003920 vs. NCBI nr
Match: gi|700206403|gb|KGN61522.1| (hypothetical protein Csa_2G154090 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 49/116 (42.24%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 13  IDYSIFVSIDSNEFKRIL-EHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGGL 72
           +D+ IFVSIDS +F+ I+ E   ++V VT T+S V+F   + EII   K  E +CII G+
Sbjct: 42  VDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEIIF--KKEEGECIIEGV 101

Query: 73  AAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNS-WSMITAPIGLYVRYSIYFP 127
             G  ++FLIP      Y+ +T  ++R+WLFKS +   + I AP+GL+ +++IYFP
Sbjct: 102 GKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYFP 155

[Close]

BLAST of ClCG06G003920 vs. NCBI nr
Match: gi|659114864|ref|XP_008457262.1| (PREDICTED: uncharacterized protein LOC103496987 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 13  IDYSIFVSIDSNEFKRIL-EHNVFLVHVTLTNSQVKFSGPIAEIILTTKINERKCIIGGL 72
           +D+ IFVSIDS +F+ I+ E   ++V VT T+S V+F   + E I   +  E  CII G+
Sbjct: 131 VDFEIFVSIDSLQFRHIIQECRDYMVRVTPTHSHVRFCNEVKEFIFAKEAGE--CIIEGV 190

Query: 73  AAGDEIQFLIPFSFHSFYFELTNWSKRIWLFKSTNS-WSMITAPIGLYVRYSIYFP 127
             G  ++FLIP      Y+ +T  ++R+WLFKS +   + I AP+GL+ +++IYFP
Sbjct: 191 GKGPAVEFLIPVYPTHVYYNITFQAQRVWLFKSVDKCGTFIIAPVGLFAQFAIYFP 244

The following BLAST results are available for this feature:

BLAST of ClCG06G003920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY3_CUCSA	2.2e-17	47.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1	[more]
A0A0A0LLD1_CUCSA	7.1e-16	42.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1	[more]
A0A0A0KFM5_CUCSA	3.0e-14	43.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106730 PE=4 SV=1	[more]
A0A0A0K7E0_CUCSA	6.7e-14	41.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1	[more]
A0A0A0KNE7_CUCSA	1.1e-13	40.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1	[more]

BLAST of ClCG06G003920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190437\|gb\|KGN45641.1\|	3.2e-17	47.01	hypothetical protein Csa_6G002350 [Cucumis sativus]	[more]
gi\|659117581\|ref\|XP_008458677.1\|	3.5e-16	45.30	PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo]	[more]
gi\|778674138\|ref\|XP_011650141.1\|	1.0e-15	42.24	PREDICTED: uncharacterized protein LOC101209763 [Cucumis sativus]	[more]
gi\|700206403\|gb\|KGN61522.1\|	1.0e-15	42.24	hypothetical protein Csa_2G154090 [Cucumis sativus]	[more]
gi\|659114864\|ref\|XP_008457262.1\|	5.1e-15	40.52	PREDICTED: uncharacterized protein LOC103496987 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G003920.1	ClCG06G003920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G003920	Cucumber (Chinese Long) v2	cuwcgB480
ClCG06G003920	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G003920	Watermelon (97103) v1	wcgwmB344
ClCG06G003920	Watermelon (97103) v1	wcgwmB347
ClCG06G003920	Cucurbita pepo (Zucchini)	cpewcgB144
ClCG06G003920	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G003920	Cucumber (Gy14) v2	cgybwcgB443
ClCG06G003920	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G003920	Silver-seed gourd	carwcgB0073
ClCG06G003920	Cucumber (Chinese Long) v3	cucwcgB502
ClCG06G003920	Watermelon (97103) v2	wcgwmbB273
ClCG06G003920	Watermelon (97103) v2	wcgwmbB274
ClCG06G003920	Wax gourd	wcgwgoB504
ClCG06G003920	Cucumber (Gy14) v1	cgywcgB228
ClCG06G003920	Cucurbita maxima (Rimu)	cmawcgB328
ClCG06G003920	Cucurbita maxima (Rimu)	cmawcgB800
ClCG06G003920	Cucurbita moschata (Rifu)	cmowcgB325
ClCG06G003920	Wild cucumber (PI 183967)	cpiwcgB507