ClCG06G002230 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G002230
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionZinc finger CCCH domain-containing protein 13
LocationCG_Chr06 : 2486744 .. 2487073 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACGAATGGCTTAATTTAAGGCTAACTGGTGATTGCTATCGGATCGGAGACTGAGAGGAGAGGGAGATCGAGAGGAGAGGGACACCGAGAGGAGAGCGAGACCGAGAGGAGATGGAGAGGCTGACTGGTGACGGCTTTCGGATCGGAGATCGAGAGGAGAGCGAGATCGAGAGGAAAGGGAGAGCGAGAGGAGAGCGAGACCGAGAGGAGAGCGACCGTGAGAGGAAATGGAAACAGCGAGGAGAACGAGTCAGCGACACTGCAAAGACTGAGAGGGAGAACGGGAGAGGAGAGGAGACAGTGGGCACTGGGTTCTGCTTCTGA

mRNA sequence

ATGGCAGACGAATGGCTTAATTTAAGGCTAACTGAGGAGAGGGAGATCGAGAGGAGAGGGACACCGAGAGGAGAGCGAGACCGAGAGGAGATGGAGAGGCTGACTGGTGACGGCTTTCGGATCGGAGATCGAGAGGAGAGCGAGATCGAGAGGAAAGGGAGAGCGAGAGGAGAGCGAGACCGAGAGGAGAGCGACCGTGAGAGGAAATGGAAACAGCGAGGAGAACGAGTCAGCGACACTGCAAAGACTGAGAGGGAGAACGGGAGAGGAGAGGAGACAGTGGGCACTGGGTTCTGCTTCTGA

Coding sequence (CDS)

ATGGCAGACGAATGGCTTAATTTAAGGCTAACTGAGGAGAGGGAGATCGAGAGGAGAGGGACACCGAGAGGAGAGCGAGACCGAGAGGAGATGGAGAGGCTGACTGGTGACGGCTTTCGGATCGGAGATCGAGAGGAGAGCGAGATCGAGAGGAAAGGGAGAGCGAGAGGAGAGCGAGACCGAGAGGAGAGCGACCGTGAGAGGAAATGGAAACAGCGAGGAGAACGAGTCAGCGACACTGCAAAGACTGAGAGGGAGAACGGGAGAGGAGAGGAGACAGTGGGCACTGGGTTCTGCTTCTGA

Protein sequence

MADEWLNLRLTEEREIERRGTPRGERDREEMERLTGDGFRIGDREESEIERKGRARGERDREESDRERKWKQRGERVSDTAKTERENGRGEETVGTGFCF
Homology
[Close]
BLAST of ClCG06G002230 vs. TrEMBL
Match: A0A0L8I7X6_OCTBM (Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22029389mg PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-07
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 9  RLTEEREIERRGTPRGERDREEMERLTGDGFRIGDREESEIERKGRAR--GERDREESDR 68
          R  EERE +RR   RGER++EE ER   +  R G+RE+ E ERK R R  GER++EE +R
Sbjct: 16 REKEERERKRRERERGEREKEERERKRRERER-GEREKEERERKRRERERGEREKEERER 75

Query: 69 ERKWKQRGERVSD 80
          +R+ ++RGER  D
Sbjct: 76 KRRERERGEREKD 87

[Close]
BLAST of ClCG06G002230 vs. TrEMBL
Match: A0A0L8I7X6_OCTBM (Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22029389mg PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.9e-06
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1 

Query: 10 LTEEREIERRGTPRGERDREEMERLTGDGFRIGDREESEIERKGRAR--GERDREESDRE 69
          L + R+ +R    RGER++EE ER   +  R G+RE+ E ERK R R  GER++EE +R+
Sbjct: 3  LCKRRDTQRE---RGEREKEERERKRRERER-GEREKEERERKRRERERGEREKEERERK 62

Query: 70 RKWKQRGERVSDTAKTERENGRGEETVG 96
          R+ ++RGER     K ERE  R E   G
Sbjct: 63 RRERERGER----EKEERERKRRERERG 82

[Close]
BLAST of ClCG06G002230 vs. NCBI nr
Match: gi|918335464|gb|KOF97509.1| (hypothetical protein OCBIM_22029389mg, partial [Octopus bimaculoides])

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 9  RLTEEREIERRGTPRGERDREEMERLTGDGFRIGDREESEIERKGRAR--GERDREESDR 68
          R  EERE +RR   RGER++EE ER   +  R G+RE+ E ERK R R  GER++EE +R
Sbjct: 16 REKEERERKRRERERGEREKEERERKRRERER-GEREKEERERKRRERERGEREKEERER 75

Query: 69 ERKWKQRGERVSD 80
          +R+ ++RGER  D
Sbjct: 76 KRRERERGEREKD 87

[Close]
BLAST of ClCG06G002230 vs. NCBI nr
Match: gi|918335464|gb|KOF97509.1| (hypothetical protein OCBIM_22029389mg, partial [Octopus bimaculoides])

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-06
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 1 

Query: 10 LTEEREIERRGTPRGERDREEMERLTGDGFRIGDREESEIERKGRAR--GERDREESDRE 69
          L + R+ +R    RGER++EE ER   +  R G+RE+ E ERK R R  GER++EE +R+
Sbjct: 3  LCKRRDTQRE---RGEREKEERERKRRERER-GEREKEERERKRRERERGEREKEERERK 62

Query: 70 RKWKQRGERVSDTAKTERENGRGEETVG 96
          R+ ++RGER     K ERE  R E   G
Sbjct: 63 RRERERGER----EKEERERKRRERERG 82

The following BLAST results are available for this feature:
BLAST of ClCG06G002230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0L8I7X6_OCTBM1.2e-0750.68Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22029389mg P... [more]
A0A0L8I7X6_OCTBM6.9e-0644.32Uncharacterized protein (Fragment) OS=Octopus bimaculoides GN=OCBIM_22029389mg P... [more]
BLAST of ClCG06G002230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|918335464|gb|KOF97509.1|1.8e-0750.68hypothetical protein OCBIM_22029389mg, partial [Octopus bimaculoides][more]
gi|918335464|gb|KOF97509.1|9.8e-0644.32hypothetical protein OCBIM_22029389mg, partial [Octopus bimaculoides][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G002230.1ClCG06G002230.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G002230Cla000682Watermelon (97103) v1wcgwmB348
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G002230Wax gourdwcgwgoB499
ClCG06G002230Cucumber (Gy14) v1cgywcgB595
ClCG06G002230Cucurbita maxima (Rimu)cmawcgB325
ClCG06G002230Cucurbita maxima (Rimu)cmawcgB807
ClCG06G002230Cucurbita moschata (Rifu)cmowcgB322
ClCG06G002230Cucurbita moschata (Rifu)cmowcgB802
ClCG06G002230Wild cucumber (PI 183967)cpiwcgB254
ClCG06G002230Wild cucumber (PI 183967)cpiwcgB503
ClCG06G002230Cucumber (Chinese Long) v2cuwcgB476
ClCG06G002230Melon (DHL92) v3.5.1mewcgB124
ClCG06G002230Cucurbita pepo (Zucchini)cpewcgB142
ClCG06G002230Bottle gourd (USVL1VR-Ls)lsiwcgB029
ClCG06G002230Cucumber (Gy14) v2cgybwcgB229
ClCG06G002230Cucumber (Gy14) v2cgybwcgB438
ClCG06G002230Melon (DHL92) v3.6.1medwcgB119
ClCG06G002230Silver-seed gourdcarwcgB0083
ClCG06G002230Silver-seed gourdcarwcgB0943
ClCG06G002230Cucumber (Chinese Long) v3cucwcgB497
ClCG06G002230Watermelon (97103) v2wcgwmbB273