ClCG06G002140 (gene) Watermelon (Charleston Gray)

NameClCG06G002140
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 2364735 .. 2370971 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATTTTCTTCCGGCCTGGAATGGATAAAAGGTGATCTTTCCTCCTATAGGAGAAGTCTTCTAAATCCATAGGGTGATTAGAACAAAATGGTGTCGTGTTCATGTCAATGTAATATGGCTTTTGTACAACACGTGCTACATAATTTGGAGTTCAAACTCTCAGCTTTAAACTACTTAAAATTATCATTTTATCCTTCCAAATGCTTTAGTGAAAATAGTTACGTCCATTTACTTTCTCAGCACTTACTCTGTTATGCTCTTTCATGATTGTGATGCAGCTTATTGAATATTATTATGCGCTACCAACGCCACCTTCAAGGGAGAAGTGAAAGTCCAATTGAAAATGACCTTCAAGAGAGAAGTGAAAGTCCAATTGACAATGACCTTCAAGAGAGAAGTGGAAATCTAATTGATAATGGTAGTGGTACAAAGGTAAGTGAGGACTTACAATCTCTAGTTAAGGTAACAAAAATATGTTTAACATGTCTACTAAAATATTTATAGATTACTAAAAGTAATTTTCATAAACATACAAAAAAAAGTAAATACATAAAATAAAAAAATAAATCAAATGACGTCCCATTCCAATTTTAAAGAGACTAGTTTTTATCAAATTGAAAGCGCTTTTAAAAATGGTAGTAGTTATAGTATTGTTCTTTAGTAAGTGTTTCATTTCAAAACACAAGCATACCAGAGAAATAATAAGAAGGCTGGTTAGAAGTGCTTGAGCAGTTCACTATTCGATCCTTTTTTTCCTGGGTGGGGAATAATGTGACTATCATTACCAAGGGGGGGAAATCTTGCATCTCCTTTTTCTTTGAAATATAATCTTCCATCTTTCTGCTGATTTTCTGCAGAACCAGGAATCTGATGAGACAATATTGGTTTCACTTGGAAAGCTCCTACAAACTATTCAAAGGCAATTTTCCGTATTTTTACTACAGCCATTTTTATGTATTAGAATTGCTCAAATCTCAACTAGGGTGTCCTCATTTCCAGTCAGGTTGAAGAACCAAATTTCAAGAAGCTCGATGTAACTCAGATGATGCAGTTGGAGAATCAACTGGAAGGCACACTTGACAAAATCAAATCTCAAAGAGTGAGTTTATTTATTTGTACCGCATATTCATCTAAGAGGTTTCAACTTGTTAACCCTTCTGAGACCCTCACTGCAAAAGTTATATGGTGGTCCCCTTGGAAGCTTATGCAATGTTGCATAGGATCATTTTAGGAAAATATAGCCCTTTCCTTAACTAATCTAACTAAAGCGTTGAAGGCACTTTTAGGGCATGTGAAAGCCTATTTTGGTATATATGAAATTTTCTAGAATCGTTAGGCTCTTTGTGCTCATTGGTTTCAACTAGAACTAGCTCAGTTGTTGTCTTACATGTCTTTATCAATTATCCTGTTTTCAAGTTTCTTCCAATGACATCTATTCTCTAGACTAACTGAAGGATTGAAGGCACTTTTAGGGACTGTGAAAGCCTATTTTGGGGTATTTGAAATTTTCTAGGTCCATTAGGTTATTCACGCTGATTGATTTCGGCTTAGGAATAACCCTAGTTGTTGTCTTCCCTGTCTTTATCAATTATCCTCTTTTCAAGTTTATTCCCATTACATCTGTCCGTATTTTGAGGATGCTATATGATTCAGTCATTTTTGTCTCATTTACAAGTATTTAGATGTTACTTTGCTACATACTGTGCTAATCGACTTTTGTCTTCTTGTATGTGGGTCCAACCCCTCACTTCCTCTTTATTTTGCGTACAGTACTTTTGTGTTTACAAGCCAAAGTTTTAACACAAGAAAGGCGAAGTATATATTGGATTCGATACAAATTGCTGGTCATATGGATAGAACTAACTTCGGGATTGGACACAGTATAAAATATCTTTTAGAAGCACATATTCTGCCAGGGGGACGATTGGGGCGTGGACATAAAGGTCTTTATGACACAATCAATAATTCGCTATTACACCTTAATCATCTTCTGTCATGTTGGGCCTACATAATGTAAGGAGGCGTCGATGAATCTGGAGCATGTTTTGTGGGAATAGGTCTAATTCCCCACTTCATGACTGAGGGGTGATTATTTGGCACACAGCTTTATTTAGGTTTTGTAGAACGTTGGCTTAAGCAAAAGAGGATCTTTACAAGTGAGGAAAGTTCTTGAGAAGAGATTAAGCAAAAGAGGATCTTTACAAGTGAGGAAAGTTCTTGAGAAGAGATTAGAACCTAGGCTAGGCTCATTACCTCCTCATGGTGATGTAGGAAGAATGGGTTAATTGGATAATATTCTAGGTTAATTTCCTTTTTACCCACATTGTAATAAAACTCTATAACTAAGAGTATTCCCCTCTTGTATTAGGCACATTATCATCTAAATAAAAGATTCACAAGTTCGGTTCTTGGAGGATTACTCCTTGAGGCTACTCAGGCTATATTACATTGGGTCTCAATTACGGAAAATTTTTGTTTCCCCCGTGGAACATCTGACATGGGCAGAAAAGGAAAATCTTTAAGCATGAAGAAAGTTCTTGGAAGTTGGAAGGAGGTTGGGACCTAAGCTGGCTTCATTACCTTCAAGGGTCCAAGTTGCTAACAATTTTAGCGATTATGTTTTTATAACTATATGTTGTTTAACAGTTTCTTGTTTTTGCTCCTTGTGACATGTACTTTCCCTTTGTTACCCTTTTTGTATTTATCCTGTGCTTTTTCCCCTCAATGGAAGTTGATTGCTTAATGGAAAACTATTTTTCAATGTTTTCCATGAGTCATCCCACACATAAATAGTAAATGCATGGTGTGGAGACTGATTTGTGTAGATTTCATTATTCCTTTTTGGTGTTGTCCTACTCTGCGGTCCTCCAAAAGTTTTTTTTGGTATATTCCAAAACATTATGGCCCAACATTTTCTTCAACGAACAGATATGTAGGTGAGTTTTATATGAAGATGAGTTTTTCAACGTGACATTTAGGCTAAATTGAAAATGACTTGAAAAGAACTTTGTATTTTGTTTTGATAACCCTGAACTTTCATAGCTAGCAATAATACCCTTAAACTTTTAAAAGGAGTTAAACAAACATCCTTATCATTAGCATATGAACAGAAACCATTATCTATACCCTTGAACAATGAATCCCCAAATATAGAAAAGACCAACAAAGGAATATCATCTTCAATGATTGGAGAACCTTCTTAATGACCACATCAAATCGACCAACTGGAATTACACAAACCATCAACAGATTCTCCTCTATCCTTCCCACTGAAAAAGATGCCTCAAAGCATATGGCCATGTCATTTTGAAGAATAAAGAGCAGTTCTTTAAATTCACTAAGTTTGTTGTGGGTGATGGGAAAGCGGTCAGATTCTGGGTGGATAGTTGGTGTGATCCTTAGCCCCTGCACAGAAATTTCTCGATATCTTTGCCATCTCTATCAAAAAAGGATGTTGTGATTGCGGGTTGTTGGTGTGGCTCCAATCAAACCTGGGATTTGGGTTTTAGAAGATGTATTTGTGATATAGAGATGGGTAATGTGGTTCCGATCTGGTAAATCCTAAATTCTTGGTGGTCCAGGGCAGTCACGACTGCCTTAAGTGGAAGATAGATGCCTTTGGGAAGTTTACAACCAAAGCTACCTTCTTAAACATTGCTAAGAGGACTCCTACTTTCACCTTTCCTTTGGTGAATCTTGTCTAGAAGCTAAAAGTTTCCAGAAAAGTTAAATTCTTCCTCTGGTCCCTTGCTTATAGAAGCTTAAATACTCGTGATAAGCTTCAAGGAAACTTAAAAACAGTTCACTGTCTCCTTCAATATGTTGCCCTTGCTTGAAAGATGAGGAGTCTCTAGACCACTTATTTCTGCATCGTGAATTTGCCACTAAGGGGTGGACCCTTCTGTTTAGTATTTTTTGTATGGAGAGTTGTCTCCCAAACAAAGTAGATGATTGGATGCATGATGGGCTTGATAGTTTTGCCTTCGGTGGTAAAGGGAAAGTTCTTTCGGAGTTGTTTTGCGGTCCCTCTTGTGGTGCCTTTGGAAAGAAATGAATAGTAAAATTTTTGAAGATAAGTATGTTTCTTTTGATTCTTTTTGGACTTTTGTTCAACATACAGCCTCTTGGTGGTGCACAAATGACACCAAACACTTTTGTAATTATAGTCTTTTGAAAATCTTTAACAATTGGAAGGCTCTTCTTCATTATTGCTTTGGGGAGGGGTCTTCTCAACCCCTTGCTCTTAGGCTGTTTTTTGGTTTCTAATGGAGTTCACATTGCTGTGTTCTTATTTTTTTTTTTAAAAAAAAAGGAAAATAGAAGCATATGGCCATGTAAAGACGAGGGCAGGGCAAGAAAAATATACACAAGGAGGGGGAACTATGTGTGCCTATCTTTTGAGAAAAGGAGAACCTGCACAGGGAGGCAACAACAGATATAGATTAATTTAAGGAAACTGTTCATGTTAAAAAGTAAGGTTGAAGATTAACACTGCTGAAACTGGAAGATACTGCCAGCTATGGTAACAAGACAAGAAATTAACTGATAAGTGGTTTGGTGTTTCAGAAAATATGAAGGCCAAGCAAGATAAGCAGAGGCGAGATAACAGTTTTATTGGGTGATTAGGTATTTCCAAAACTTCAGCCTAATGGCGGCTATTAGTCCTAGGTAACCTATCTCCCTGTTTTAATGGACTTTATCTCATAATTAAAAGAGTTGCTGCTCACAAGCACCATCCATTCAGTATTCCATTTTCCTCAGTTGAGGCTGGCTAAGGGATCTAATTTTAAGCCCATCATGTAACTAGGTCATTTACGTTTGTGCAGAGATGTGCATCTACTTATATTTTTATGCTGCCCTGGAATGAACACCAGCATTTAATACTACTCCCAAGGAGCTGTTTGACTCGATTACGTTTCACCTTTAAGACAATGTGAAAATTTTGGAAGGGATATCAGGGGGTCCAATAGTCCTAAAATTAAGAAACAATAAAGCAATGTGAAGTTCTGGGAGATGTGAGCAAGGAAGTTGAAGAAAATAGGCTTTATGAAGGGAGAGAGTCAAAACCGTTGTACTTTCCCCTACTCCACTATCTGTGTGTTTAAGCCATTCACAGTTTCATTCCTGCTTTAAGATAGGTAAGTTTGACAATGGTTCACTTGTTGATGAATTCAAAACACTACCTCAAACTGCCAAATCTTGCACACTCCCTTCTTGTCAAAGTGCTGTTCTTGTGTAGACCAAAACCTCATAATTAAGGCAAGCCAGAATTCTTCCCAAGTTTGGAAAAGTTCTCTTCTCTTCCCTACAGAAGCATGCTCATGGTTTCCTCCTCTTCATATAGGATATCAAAAGGGCAAAACTATTTAACTTGGTATATACATTAGCCATTCTATAATTAACTCTTCCTTAGAACTTAAGGACATAGTTGTACAATCTATAGAACAGATCATGTTCAAGTAAAGGTCGTATTCTATAATTAACTCTTCCACAAATTAGTGTGCAGAAAAGAAAAAGAAAAAAAAAGGATAGAACTCAAGCACAAATTAAAGAAAATAGTTTTCTTTTCTCCATCTCTATTAGAACCTTTGCAAAATCACACGACGACTTCCTCAAATATATGCAAACAGCCTGTCAACTTGAAGAGGAGAACTAACTGTATGATTCTCAAGTTTTAAATTGACTCCAGGCTGTAACTTTCTGGAATGTGTGGACTCAAAAGGGAATTCCAGCCAGAGGCTCAAATTACAAACATTCTACAACTAACTGCTCAATCCTCAAGTGTGATTGAATCAACATATAATGACATACAATTCAATAGTAATAAAAGACTTCTCCATATTAATCACAATTGCTATAAGAAATTGGAATTAGTTGGGCATGCGGTGGTGTCTGATTGCTTAGAACTTTTTTAACATCTAAATTTCCAGAAGTATATCTAAGTATAGATAGAAACCTCACCTGAATTCCAAATATGTGGGGAGCGATTCCAACGAACTGCTTAGTCGGACGGTAACAAGACTTGTATGAGAATATGCTTCTGCTTTTGCACATTGGTCTGATTTTAGATGAACTGGAAACAAAATCTTGAAAGTAGATACCAGTGAGGAATTCAAAAGTGTTACAATGACTATTCTTTTTACTTGCAGATTGAGGCAATGATAGAAAACGACTGTTGGACATACAGCATGGATATGGCTATGGACATGTTCAACAGCCCGTCATTTAATTAG

mRNA sequence

ATGAGCATTTTCTTCCGGCCTGGAATGGATAAAAGCTTATTGAATATTATTATGCGCTACCAACGCCACCTTCAAGGGAGAAGTGAAAGTCCAATTGAAAATGACCTTCAAGAGAGAAGTGAAAGTCCAATTGACAATGACCTTCAAGAGAGAAGTGGAAATCTAATTGATAATGGTAGTGGTACAAAGGTAAGTGAGGACTTACAATCTCTAGTTAAGAACCAGGAATCTGATGAGACAATATTGGTTGAAGAACCAAATTTCAAGAAGCTCGATGTAACTCAGATGATGCAGTTGGAGAATCAACTGGAAGGCACACTTGACAAAATCAAATCTCAAAGAATTGAGGCAATGATAGAAAACGACTGTTGGACATACAGCATGGATATGGCTATGGACATGTTCAACAGCCCGTCATTTAATTAG

Coding sequence (CDS)

ATGAGCATTTTCTTCCGGCCTGGAATGGATAAAAGCTTATTGAATATTATTATGCGCTACCAACGCCACCTTCAAGGGAGAAGTGAAAGTCCAATTGAAAATGACCTTCAAGAGAGAAGTGAAAGTCCAATTGACAATGACCTTCAAGAGAGAAGTGGAAATCTAATTGATAATGGTAGTGGTACAAAGGTAAGTGAGGACTTACAATCTCTAGTTAAGAACCAGGAATCTGATGAGACAATATTGGTTGAAGAACCAAATTTCAAGAAGCTCGATGTAACTCAGATGATGCAGTTGGAGAATCAACTGGAAGGCACACTTGACAAAATCAAATCTCAAAGAATTGAGGCAATGATAGAAAACGACTGTTGGACATACAGCATGGATATGGCTATGGACATGTTCAACAGCCCGTCATTTAATTAG

Protein sequence

MSIFFRPGMDKSLLNIIMRYQRHLQGRSESPIENDLQERSESPIDNDLQERSGNLIDNGSGTKVSEDLQSLVKNQESDETILVEEPNFKKLDVTQMMQLENQLEGTLDKIKSQRIEAMIENDCWTYSMDMAMDMFNSPSFN
BLAST of ClCG06G002140 vs. TrEMBL
Match: A0A0A0KFD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095280 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-33
Identity = 81/125 (64.80%), Postives = 92/125 (73.60%), Query Frame = 1

Query: 18  MRYQRHLQGRSESPIENDLQERSESPIDNDLQERSGNLIDNGSGTKVSEDLQSLVKNQES 77
           MRYQ HLQGR+ESPI+NDLQ  SES IDND +       D+ S   +   L+ L++  +S
Sbjct: 1   MRYQSHLQGRNESPIDNDLQGTSESLIDNDAK-------DHVSDETILVSLKKLLQTIQS 60

Query: 78  DETILVEEPNFKKLDVTQMMQLENQLEGTLDKIKSQRIEAMIEN-DCWTYSMDMAMDMFN 137
                VEEPNFKKLD+TQM+QLENQLE TLDKIKSQRIEAMIEN DCWTY MDMAM M N
Sbjct: 61  Q----VEEPNFKKLDITQMVQLENQLESTLDKIKSQRIEAMIENDDCWTYDMDMAMGMIN 114

Query: 138 SPSFN 142
           SP FN
Sbjct: 121 SPPFN 114

BLAST of ClCG06G002140 vs. NCBI nr
Match: gi|778711881|ref|XP_011656809.1| (PREDICTED: MADS-box transcription factor 8-like [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-35
Identity = 87/131 (66.41%), Postives = 98/131 (74.81%), Query Frame = 1

Query: 12  SLLNIIMRYQRHLQGRSESPIENDLQERSESPIDNDLQERSGNLIDNGSGTKVSEDLQSL 71
           SLLNIIMRYQ HLQGR+ESPI+NDLQ  SES IDND +       D+ S   +   L+ L
Sbjct: 62  SLLNIIMRYQSHLQGRNESPIDNDLQGTSESLIDNDAK-------DHVSDETILVSLKKL 121

Query: 72  VKNQESDETILVEEPNFKKLDVTQMMQLENQLEGTLDKIKSQRIEAMIEN-DCWTYSMDM 131
           ++  +S     VEEPNFKKLD+TQM+QLENQLE TLDKIKSQRIEAMIEN DCWTY MDM
Sbjct: 122 LQTIQSQ----VEEPNFKKLDITQMVQLENQLESTLDKIKSQRIEAMIENDDCWTYDMDM 181

Query: 132 AMDMFNSPSFN 142
           AM M NSP FN
Sbjct: 182 AMGMINSPPFN 181

BLAST of ClCG06G002140 vs. NCBI nr
Match: gi|659119793|ref|XP_008459847.1| (PREDICTED: MADS-box transcription factor 8-like [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-35
Identity = 86/132 (65.15%), Postives = 101/132 (76.52%), Query Frame = 1

Query: 12  SLLNIIMRYQRHLQGRSESPIENDLQERSESPIDNDLQER-SGNLIDNGSGTKVSEDLQS 71
           SLLNIIMRYQ HLQGR+ESPI+NDLQ RSES ID+D ++  S   I + S   +   L+ 
Sbjct: 62  SLLNIIMRYQSHLQGRNESPIDNDLQGRSESLIDSDAKDHVSDETILDVSDETILVSLKK 121

Query: 72  LVKNQESDETILVEEPNFKKLDVTQMMQLENQLEGTLDKIKSQRIEAMIEN-DCWTYSMD 131
            ++  +S     VEEPNFKKLD+TQM+QLENQLEGTLDKIKSQRIEAMIEN DCWTY M+
Sbjct: 122 QLQTIQSQ----VEEPNFKKLDITQMVQLENQLEGTLDKIKSQRIEAMIENDDCWTYDME 181

Query: 132 MAMDMFNSPSFN 142
           +AM M NSP FN
Sbjct: 182 IAMGMINSPPFN 189

BLAST of ClCG06G002140 vs. NCBI nr
Match: gi|700191257|gb|KGN46461.1| (hypothetical protein Csa_6G095280 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 1.3e-32
Identity = 81/125 (64.80%), Postives = 92/125 (73.60%), Query Frame = 1

Query: 18  MRYQRHLQGRSESPIENDLQERSESPIDNDLQERSGNLIDNGSGTKVSEDLQSLVKNQES 77
           MRYQ HLQGR+ESPI+NDLQ  SES IDND +       D+ S   +   L+ L++  +S
Sbjct: 1   MRYQSHLQGRNESPIDNDLQGTSESLIDNDAK-------DHVSDETILVSLKKLLQTIQS 60

Query: 78  DETILVEEPNFKKLDVTQMMQLENQLEGTLDKIKSQRIEAMIEN-DCWTYSMDMAMDMFN 137
                VEEPNFKKLD+TQM+QLENQLE TLDKIKSQRIEAMIEN DCWTY MDMAM M N
Sbjct: 61  Q----VEEPNFKKLDITQMVQLENQLESTLDKIKSQRIEAMIENDDCWTYDMDMAMGMIN 114

Query: 138 SPSFN 142
           SP FN
Sbjct: 121 SPPFN 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KFD8_CUCSA9.3e-3364.80Uncharacterized protein OS=Cucumis sativus GN=Csa_6G095280 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778711881|ref|XP_011656809.1|1.3e-3566.41PREDICTED: MADS-box transcription factor 8-like [Cucumis sativus][more]
gi|659119793|ref|XP_008459847.1|2.9e-3565.15PREDICTED: MADS-box transcription factor 8-like [Cucumis melo][more]
gi|700191257|gb|KGN46461.1|1.3e-3264.80hypothetical protein Csa_6G095280 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0000165 MAPK cascade
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G002140.1ClCG06G002140.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 96..116
scor

The following gene(s) are paralogous to this gene:

None