ClCG06G001170 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G001170
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 1159072 .. 1159405 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCGAGGGTTCGCTGGGAGAGGTCGTGCGCGAGCGGCACGGTGCTGGAGCGTCGTTTGAAGGCCACGAGTTAGTTGAGAAGGCGTTGCTGGAGCTTGTGGGTCACGCAGATCGAAACCTCCGCCAGCGTTCACTGCTGTCGCTGGAAACGGAAAAATAACAGGGGGCGACTGAGACGCATCTAACGGTGCAGCGTTGCCCGCGTCCTGTTCGTCGTTCGTCGATTACAGCAGGTGGATTCCGCCCACTGGATCTGCTGTCAAGCCGCTGCACGTAGACGGTTGTCGTCGCCGGATAAGATGACAGTTGAAACCGCAAGGGGCAGCTGA

mRNA sequence

ATGGAGGCCGAGGGTTCGCTGGGAGAGGTCGTGCGCGAGCGGCACGGTGCTGGAGCGTCGTTTGAAGGCCACGAGTTAGTTGAGAAGGCGTTGCTGGAGCTTGTGGGTCACGCAGATCGAAACCTCCGCCAGCGTTCACTGCTCGTTGCCCGCGTCCTGTTCGTCGTTCGTCGATTACAGCAGGTGGATTCCGCCCACTGGATCTGCTGTCAAGCCGCTGCACGTAGACGGTTGTCGTCGCCGGATAAGATGACAGTTGAAACCGCAAGGGGCAGCTGA

Coding sequence (CDS)

ATGGAGGCCGAGGGTTCGCTGGGAGAGGTCGTGCGCGAGCGGCACGGTGCTGGAGCGTCGTTTGAAGGCCACGAGTTAGTTGAGAAGGCGTTGCTGGAGCTTGTGGGTCACGCAGATCGAAACCTCCGCCAGCGTTCACTGCTCGTTGCCCGCGTCCTGTTCGTCGTTCGTCGATTACAGCAGGTGGATTCCGCCCACTGGATCTGCTGTCAAGCCGCTGCACGTAGACGGTTGTCGTCGCCGGATAAGATGACAGTTGAAACCGCAAGGGGCAGCTGA

Protein sequence

MEAEGSLGEVVRERHGAGASFEGHELVEKALLELVGHADRNLRQRSLLVARVLFVVRRLQQVDSAHWICCQAAARRRLSSPDKMTVETARGS
Homology
[Close]
BLAST of ClCG06G001170 vs. TrEMBL
Match: A0A0A0KBX0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087730 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.7e-08
Identity = 43/88 (48.86%), Postives = 45/88 (51.14%), Query Frame = 1 

Query: 1   MEAEGSLGEVVRERHGAGASFEGHELVEKALLELVGHADRNLRQRSLLVARVLFVVRRLQ 60
           MEA GSLGEV RER GAG SFEGH  +E           R    RS + A V        
Sbjct: 27  MEAAGSLGEVERERQGAGVSFEGHRSLETEKWPTEERRCRRTVLRSSITAGVFH------ 86

Query: 61  QVDSAHWICCQAAARRRLSSPDKMTVET 89
                  I CQAAARRR  SPDKM VET
Sbjct: 87  -----PQIWCQAAARRRSPSPDKMAVET 103

[Close]
BLAST of ClCG06G001170 vs. NCBI nr
Match: gi|700191140|gb|KGN46344.1| (hypothetical protein Csa_6G087730 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 9.7e-08
Identity = 43/88 (48.86%), Postives = 45/88 (51.14%), Query Frame = 1 

Query: 1   MEAEGSLGEVVRERHGAGASFEGHELVEKALLELVGHADRNLRQRSLLVARVLFVVRRLQ 60
           MEA GSLGEV RER GAG SFEGH  +E           R    RS + A V        
Sbjct: 27  MEAAGSLGEVERERQGAGVSFEGHRSLETEKWPTEERRCRRTVLRSSITAGVFH------ 86

Query: 61  QVDSAHWICCQAAARRRLSSPDKMTVET 89
                  I CQAAARRR  SPDKM VET
Sbjct: 87  -----PQIWCQAAARRRSPSPDKMAVET 103

The following BLAST results are available for this feature:
BLAST of ClCG06G001170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBX0_CUCSA6.7e-0848.86Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087730 PE=4 SV=1[more]
BLAST of ClCG06G001170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191140|gb|KGN46344.1|9.7e-0848.86hypothetical protein Csa_6G087730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G001170.1ClCG06G001170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G001170Csa6G087730Cucumber (Chinese Long) v2cuwcgB476
ClCG06G001170MELO3C022419Melon (DHL92) v3.5.1mewcgB124
ClCG06G001170Cla007040Watermelon (97103) v1wcgwmB345
ClCG06G001170Cla97C06G110430Watermelon (97103) v2wcgwmbB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G001170Cucumber (Gy14) v2cgybwcgB438
ClCG06G001170Melon (DHL92) v3.6.1medwcgB119
ClCG06G001170Cucumber (Chinese Long) v3cucwcgB497
ClCG06G001170Wax gourdwcgwgoB491
ClCG06G001170Cucumber (Gy14) v1cgywcgB595
ClCG06G001170Cucurbita maxima (Rimu)cmawcgB808
ClCG06G001170Wild cucumber (PI 183967)cpiwcgB503
ClCG06G001170Cucurbita pepo (Zucchini)cpewcgB302
ClCG06G001170Bottle gourd (USVL1VR-Ls)lsiwcgB029