ClCG06G000020 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G000020
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 32546 .. 33494 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGGAGATGCTCTCTTTCACAGAAGGTTGTAAGACCTCCAATCATCCACGCGTATAAAGGAAGGGCAAGAAGGTAATTCCAGGTGGACCAAACTGTTAGTAGATAGTGGAATGTGGTTGTACGGAAGAAAGGAGGGGACCACGAGGAGAAGGGTTAAGTAGCGTTTTGTGAAGGAAGTCGGGTGGAGAATTTTAGAGGAAGCAAGGTCTTCTTGGAGAGAATTCTCAGCTCTCTCAAATGTGCTGAGGCTGTTGTTCTTTGTGTCATCTCTCTGTTTTTCATGTTCTTGAATTTCCTTGTTATATCTCCAATCATAAATTTACAAAACAGGGGTGATCTTGCCCTCTTTCTTTGGAGTATTGTGTTTCTTGTTGGGTTTATTGTGTGCCGGAGTTAGGTCTCTTGTTTTTAGACTCTCTCTATGTAAAGATGGAACCATTTCAGACACATGGAATGGAAAATGCCCGCTGGAACCTACGGCTTAGAAGAAATCTGAGATTGACAAGTTCGCCTCCATGATGCAAATCCTTGAGGCTGCCACTTTATCCAAAAGACGTGATAGGGGTATTTGGAAAATGGGGATAAATGGTATCTTTTCTATAAATTCTCTCCTTAAAGATCTTCAACAGGCAAGCACTGAATCCTCCCCACAGCTTTATGAATTGATATGGAAATCCCATATCCCTAAAATGATCAAATTCCTTCTCTGGAAGCTATCTCATAAAGCTATAAACACAAATGACAAACTTCAGAGAAGACCACCCCACTGGAACTTATCTCATCAATGGTGCACCATTTGTAAGAATAGCTTGCTAGATATTTTTGGAATCCACATACAGGCATCCTTTCACTGGCACATGGCACTTCCAAGGGATCCAAAGATGCACCTTGCATACACTTTAGGCTGTCATCCTTTTAAAAAGAAAAAGAAGTTTCCTAGTTAG

mRNA sequence

ATGGGCTGGAGATGCTCTCTTTCACAGAAGGTTGTAAGACCTCCAATCATCCACGCGTATAAAGGAAGGGCAAGAAGTCGGGTGGAGAATTTTAGAGGAAGCAAGGTCTTCTTGGAGAGAATTCTCAGCTCTCTCAAATGTGCTGAGGCTGTTGTTCTTTGTAAGAAATCTGAGATTGACAAGTTCGCCTCCATGATGCAAATCCTTGAGGCTGCCACTTTATCCAAAAGACGTGATAGGGGTATTTGGAAAATGGGGATAAATGGTATCTTTTCTATAAATTCTCTCCTTAAAGATCTTCAACAGGCAAGCACTGAATCCTCCCCACAGCTTTATGAATTGATATGGAAATCCCATATCCCTAAAATGATCAAATTCCTTCTCTGGAAGCTATCTCATAAAGCTATAAACACAAATGACAAACTTCAGAGAAGACCACCCCACTGGAACTTATCTCATCAATGGTGCACCATTTGTAAGAATAGCTTGCTAGATATTTTTGGAATCCACATACAGGCATCCTTTCACTGGCACATGGCACTTCCAAGGGATCCAAAGATGCACCTTGCATACACTTTAGGCTGTCATCCTTTTAAAAAGAAAAAGAAGTTTCCTAGTTAG

Coding sequence (CDS)

ATGGGCTGGAGATGCTCTCTTTCACAGAAGGTTGTAAGACCTCCAATCATCCACGCGTATAAAGGAAGGGCAAGAAGTCGGGTGGAGAATTTTAGAGGAAGCAAGGTCTTCTTGGAGAGAATTCTCAGCTCTCTCAAATGTGCTGAGGCTGTTGTTCTTTGTAAGAAATCTGAGATTGACAAGTTCGCCTCCATGATGCAAATCCTTGAGGCTGCCACTTTATCCAAAAGACGTGATAGGGGTATTTGGAAAATGGGGATAAATGGTATCTTTTCTATAAATTCTCTCCTTAAAGATCTTCAACAGGCAAGCACTGAATCCTCCCCACAGCTTTATGAATTGATATGGAAATCCCATATCCCTAAAATGATCAAATTCCTTCTCTGGAAGCTATCTCATAAAGCTATAAACACAAATGACAAACTTCAGAGAAGACCACCCCACTGGAACTTATCTCATCAATGGTGCACCATTTGTAAGAATAGCTTGCTAGATATTTTTGGAATCCACATACAGGCATCCTTTCACTGGCACATGGCACTTCCAAGGGATCCAAAGATGCACCTTGCATACACTTTAGGCTGTCATCCTTTTAAAAAGAAAAAGAAGTTTCCTAGTTAG

Protein sequence

MGWRCSLSQKVVRPPIIHAYKGRARSRVENFRGSKVFLERILSSLKCAEAVVLCKKSEIDKFASMMQILEAATLSKRRDRGIWKMGINGIFSINSLLKDLQQASTESSPQLYELIWKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNSLLDIFGIHIQASFHWHMALPRDPKMHLAYTLGCHPFKKKKKFPS

Homology

[Close]

BLAST of ClCG06G000020 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 1


Query: 57   SEIDKFASMMQILEAATLSKR-RDRGIWKMGINGIFSINSLLKDLQQASTESSPQLYELI 116
            SEI+K  S+MQ L+   LS    D+  W +  +G+F++ S    L Q S   S    +L+
Sbjct: 1103 SEIEKVESLMQSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLV 1162

Query: 117  WKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTIC--KNSLLDIFGIHIQA 176
            W S +P  IKF +W ++HK +NTND LQ R P+  LS   C +C  +   +D   +H   
Sbjct: 1163 WNSQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSM 1222

Query: 177  SFH-WH 179
            +   WH
Sbjct: 1223 TMGLWH 1228

[Close]

BLAST of ClCG06G000020 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.7e-11
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1


Query: 57  SEIDKFASMMQILEAATLS-KRRDRGIWKMGINGIFSINSLLKDLQQASTESSPQLY--- 116
           SEID F  +M  L +  LS    D   W +  +G FS+ S    L   S +S+P ++   
Sbjct: 843 SEIDLFQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYAL---SKDSNPLMFLPA 902

Query: 117 ELIWKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNS--LLDIFGIH 176
           + +W S +P  +K L W ++H  +NTNDKLQ R P+  L  QWC +CK +   +D   +H
Sbjct: 903 KFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESIDHLFLH 962

Query: 177 IQASFH-WH 179
              +   WH
Sbjct: 963 CPVTIGLWH 968

[Close]

BLAST of ClCG06G000020 vs. TrEMBL
Match: A5AMF5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037097 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1


Query: 57  SEIDKFASMMQILEAATLSKR-RDRGIWKMGINGIFSINSLLKDLQQASTESSPQLYELI 116
           SEID    +M  L +   S    D  +W +  +G+FS+ S    L + S        + +
Sbjct: 765 SEIDLLQRLMSSLSSVRFSPSLADSRVWSLSSSGLFSVKSFFLALSKVSNPILFLPAKFL 824

Query: 117 WKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNS 163
           W S +P  +K L+W ++H  +NTNDKLQ R P+ +L  QWC +CK +
Sbjct: 825 WSSKVPSKVKALVWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGN 871

[Close]

BLAST of ClCG06G000020 vs. TrEMBL
Match: A5AKV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008255 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 45/129 (34.88%), Postives = 66/129 (51.16%), Query Frame = 1


Query: 57  SEIDKFASMMQILEAATLS-KRRDRGIWKMGINGIFSINSLLKDLQQASTESSPQLY--- 116
           SEID    +M  L +  LS    D   W +  +G FS+ S    L   S +S+P ++   
Sbjct: 476 SEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYAL---SKDSNPLMFLPA 535

Query: 117 ELIWKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNSLLDIFGIHIQ 176
           + +W S +P  +K L W ++H  +NTNDKLQ R P+  L  QWC +CK +   I  +   
Sbjct: 536 KFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESIDHLFSS 595

Query: 177 AS-FHWHMA 181
            S  HW +A
Sbjct: 596 LSRHHWTLA 601

[Close]

BLAST of ClCG06G000020 vs. TrEMBL
Match: A5BY18_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041975 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.0e-11
Identity = 44/129 (34.11%), Postives = 67/129 (51.94%), Query Frame = 1


Query: 57  SEIDKFASMMQILEAATLS-KRRDRGIWKMGINGIFSINSLLKDLQQASTESSPQLY--- 116
           SEID    +M  L++  LS    D   W +  +G FS+ S    L   S +S+P ++   
Sbjct: 89  SEIDLLQRLMSSLQSVLLSPSSSDSRAWSLSSSGSFSVKSFFYAL---SKDSNPLMFLPA 148

Query: 117 ELIWKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNS--LLDIFGIH 176
           + +W S +P  +K L W ++H  +NTNDKLQ R P+  L  QWC +CK +   +D   +H
Sbjct: 149 KFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDHLFLH 208

Query: 177 IQASFH-WH 179
              +   WH
Sbjct: 209 CPVTIGLWH 214

[Close]

BLAST of ClCG06G000020 vs. NCBI nr
Match: gi|659071582|ref|XP_008460744.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 9.1e-14
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1


Query: 75  SKRRDRGIWKMGINGIFSINSLLKDLQQASTESSPQL----YELIWKSHIPKMIKFLLWK 134
           +K   +  WK+  NG FSI S+ K L     + +  +    +  +WKS IPK  KF +W 
Sbjct: 112 NKGAPKSFWKLNSNGGFSIASVKKALNSIEIDDNIAIQASTFNSLWKSEIPKRCKFFIWT 171

Query: 135 LSHKAINTNDKLQRRPPHWNLSHQWCTICKNSLLDIFGIHIQASF 176
           L H+ INT +KLQ+R P++NL  QWC++CK++  DI  + IQ  +
Sbjct: 172 LIHECINTAEKLQKRLPNYNLCPQWCSMCKSNAEDINHLFIQCPY 216

[Close]

BLAST of ClCG06G000020 vs. NCBI nr
Match: gi|659122972|ref|XP_008461420.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 81.6 bits (200), Expect = 1.7e-12
Identity = 38/97 (39.18%), Postives = 53/97 (54.64%), Query Frame = 1


Query: 82  IWKMGINGIFSINSLLKDLQQASTESS---PQLYELIWKSHIPKMIKFLLWKLSHKAINT 141
           +WK+  N IF   S+ + L +A    +   P LY+ +WK   PK  KF +W L H  INT
Sbjct: 208 LWKLNSNNIFDTASVKRALAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINT 267

Query: 142 NDKLQRRPPHWNLSHQWCTICKNSLLDIFGIHIQASF 176
            D+LQ+R P+W LS  WC +C  S  DI  + I   +
Sbjct: 268 ADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPY 304

[Close]

BLAST of ClCG06G000020 vs. NCBI nr
Match: gi|147798966|emb|CAN68165.1| (hypothetical protein VITISV_008538 [Vitis vinifera])

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 1


Query: 57   SEIDKFASMMQILEAATLSKR-RDRGIWKMGINGIFSINSLLKDLQQASTESSPQLYELI 116
            SEI+K  S+MQ L+   LS    D+  W +  +G+F++ S    L Q S   S    +L+
Sbjct: 1103 SEIEKVESLMQSLDHIHLSPSVPDKRSWSLSSSGLFTVKSFFLALSQISGLPSVFPTKLV 1162

Query: 117  WKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTIC--KNSLLDIFGIHIQA 176
            W S +P  IKF +W ++HK +NTND LQ R P+  LS   C +C  +   +D   +H   
Sbjct: 1163 WNSQVPFKIKFFVWLVAHKKVNTNDMLQLRRPYKALSPDICMLCMERGETVDHLFLHCSM 1222

Query: 177  SFH-WH 179
            +   WH
Sbjct: 1223 TMGLWH 1228

[Close]

BLAST of ClCG06G000020 vs. NCBI nr
Match: gi|147841235|emb|CAN75609.1| (hypothetical protein VITISV_002943 [Vitis vinifera])

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 45/129 (34.88%), Postives = 67/129 (51.94%), Query Frame = 1


Query: 57  SEIDKFASMMQILEAATLS-KRRDRGIWKMGINGIFSINSLLKDLQQASTESSPQLY--- 116
           SEID F  +M  L +  LS    D   W +  +G FS+ S    L   S +S+P ++   
Sbjct: 843 SEIDLFQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYAL---SKDSNPLMFLPA 902

Query: 117 ELIWKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNS--LLDIFGIH 176
           + +W S +P  +K L W ++H  +NTNDKLQ R P+  L  QWC +CK +   +D   +H
Sbjct: 903 KFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKRNGESIDHLFLH 962

Query: 177 IQASFH-WH 179
              +   WH
Sbjct: 963 CPVTIGLWH 968

[Close]

BLAST of ClCG06G000020 vs. NCBI nr
Match: gi|658019308|ref|XP_008345005.1| (PREDICTED: uncharacterized protein LOC103407907 [Malus domestica])

HSP 1 Score: 76.6 bits (187), Expect = 5.5e-11
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 1


Query: 56  KSEIDKFASMMQILEAATLSKRR-DRGIWKMGINGIFSINSLLKDLQQASTESSPQLYEL 115
           ++EI++ A ++Q +E   LS+ R D   WKM  +G+F+  S    L         Q +  
Sbjct: 202 EAEIEEAARLLQKVEEVRLSQSRXDNXRWKMEASGLFTCKSYCSFLSNNGMMQYFQPHSQ 261

Query: 116 IWKSHIPKMIKFLLWKLSHKAINTNDKLQRRPPHWNLSHQWCTICKNSLLDIFGIHIQAS 175
           IWKS +P  +K L+W  +   +NT D++QRR P   LS QWC++CK     +  I +  S
Sbjct: 262 IWKSKVPPKVKILVWLAAKGKLNTCDQIQRRSPFICLSPQWCSLCKAKEESVNHIFLHCS 321

The following BLAST results are available for this feature:

BLAST of ClCG06G000020 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BPI6_VITVI	1.3e-11	35.71	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1	[more]
A5AFR7_VITVI	1.7e-11	34.88	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1	[more]
A5AMF5_VITVI	3.8e-11	34.58	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037097 PE=4 SV=1	[more]
A5AKV7_VITVI	3.8e-11	34.88	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008255 PE=4 SV=1	[more]
A5BY18_VITVI	5.0e-11	34.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041975 PE=4 SV=1	[more]

BLAST of ClCG06G000020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071582\|ref\|XP_008460744.1\|	9.1e-14	39.05	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|659122972\|ref\|XP_008461420.1\|	1.7e-12	39.18	PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]	[more]
gi\|147798966\|emb\|CAN68165.1\|	1.9e-11	35.71	hypothetical protein VITISV_008538 [Vitis vinifera]	[more]
gi\|147841235\|emb\|CAN75609.1\|	2.5e-11	34.88	hypothetical protein VITISV_002943 [Vitis vinifera]	[more]
gi\|658019308\|ref\|XP_008345005.1\|	5.5e-11	33.88	PREDICTED: uncharacterized protein LOC103407907 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR026960	RVT-Znf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G000020.1	ClCG06G000020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 91..163 score: 9.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G000020	Bottle gourd (USVL1VR-Ls)	lsiwcgB029
ClCG06G000020	Cucumber (Gy14) v2	cgybwcgB438
ClCG06G000020	Melon (DHL92) v3.6.1	medwcgB119
ClCG06G000020	Cucumber (Chinese Long) v3	cucwcgB497
ClCG06G000020	Watermelon (97103) v2	wcgwmbB273
ClCG06G000020	Cucumber (Gy14) v1	cgywcgB620
ClCG06G000020	Wild cucumber (PI 183967)	cpiwcgB503
ClCG06G000020	Cucumber (Chinese Long) v2	cuwcgB476
ClCG06G000020	Melon (DHL92) v3.5.1	mewcgB124
ClCG06G000020	Watermelon (97103) v1	wcgwmB345