ClCG05G026920 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G026920
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 38147747 .. 38149023 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTAGTATTACAGGAACGACAGGACAAAAGCCTGAGATTCAAAGTTTCACACAGCTTGGAGCAGCCAAGAGAAAATACAAGGGAAGGAACTTACAGTTGGTTACAAATGGACATCTCTGAAGCGAAACCTGGCATCCCGTTTGCCACTTTCTTCTCATTTCTTTCTCAACTTGCCTGGTCCACTCGCCCTACAACCATCATGAAGATAAGTCTAAAGACACCAAATTCAAAAGCCCCAAAAGCTCAGCTAGTCAACTATATGTATATACTCGCAGGAGATTCAGATATATGCATAACAACCGATGATGCCAGGAAAAATAGCAAGAGGCCTCGAAGAGAAGATATAATCAGGTATCAGCCATGAAAAGGAAGCTAACAGGACAGCAATGGAATTAGTAAGAAAGTACCAAACTACAGGATCACCAGGATGTTAGCCACAATCTTTCGAGTCATGGAACACAACACCAGCCCAGACAACCAAAGAGATCAAATTCACATAAGATCCTAGTCAACTTGAAATCAATCGAACTGACAAGCAAAGTATACCTCGGTTACCATCAACCCAGAAACGCCATGAAATTAAACTTACCTAAATGATGCAGATTACTCCCTACAACTATACCACCCCCTACGAGCCAAACAGCGGTAAACAGTCAAAAAAGAGAGAAAAAAAAAAACAAAAAAAAACAAAGCTCAGCAGAAAGCAACGATACCCCCGATGTCAAAATCGCCCAAAACAAGTCAAAGTGGCATATCAGGACTTGGAAGCACGTATTTGACCGCAAACGAGCGAGACCCAGTTGGCTAAATTAGGCGAATTGGAAAAATTGGAAGGCCCCCTTCCCCAATAACGAACTTGGGACAGAAATCAAGAACAGTTGCAGTAAATAATCAGCATGAAAGCGCTTGCTTACAGCCGAGGGCTCTGTTAAAGTGGAAGGTGAAGCAAAGTAAAGGCAGTAGAAGTTTGGATGACGAAGATGGTGGGGGATTTGAGGTGGCGCTCGTGTATTACTGGATTCAAGTGTGGGAAAGGTGAGGGAGAGAGGGACGTTTCGTTCGACTGTGTGCCAACTGCCAAGCCAATCTCAAGAAGGCGTTCTTTACTTTATTGCGTGGAAATCTTCAACTTTCCAATGCCCAATTATTACCTTCTGCCCCTTTTTCTAATTCTGTGTTTGATGATGAAGGTCAGTGGGTTTGACATTGATAATTTTTGGGCTATTTTTCTATCTTAGCTTGAGTTGCAGCAATGGCAGTGATCTAATTTAG

mRNA sequence

ATGTTCTTAGTATTACAGGAACGACAGGACAAAAGCCTGAGATTCAAAGTTTCACACAGCTTGGAGCAGCCAAGAGAAAATACAAGGGAAGGAACTTACAGTTGGTTACAAATGGACATCTCTGAAGCGAAACCTGGCATCCCGTTTGCCACTTTCTTCTCATTTCTTTCTCAACTTGCCTGGTCCACTCGCCCTACAACCATCATGAAGATAAGTCTAAAGACACCAAATTCAAAAGCCCCAAAAGCTCAGCTAGTCAACTATATGTATATACTCGCAGGAGATTCAGATATATGCATAACAACCGATGATGCCAGGAAAAATAGCAAGAGGCCTCGAAGAGAAGATATAATCAGGCCCCCTTCCCCAATAACGAACTTGGGACAGAAATCAAGAACAGTTGCAGTAAATAATCAGCATGAAAGCGCTTGCTTACAGCCGAGGGCTCTGTTAAAGTGGAAGGTGAAGCAAAGTAAAGGCAGTAGAAGTTTGGATGACGAAGATGGTGGGGGATTTGAGGTGGCGCTCGTGTATTACTGGATTCAAGTGTGGGAAAGGTCAGTGGGTTTGACATTGATAATTTTTGGGCTATTTTTCTATCTTAGCTTGAGTTGCAGCAATGGCAGTGATCTAATTTAG

Coding sequence (CDS)

ATGTTCTTAGTATTACAGGAACGACAGGACAAAAGCCTGAGATTCAAAGTTTCACACAGCTTGGAGCAGCCAAGAGAAAATACAAGGGAAGGAACTTACAGTTGGTTACAAATGGACATCTCTGAAGCGAAACCTGGCATCCCGTTTGCCACTTTCTTCTCATTTCTTTCTCAACTTGCCTGGTCCACTCGCCCTACAACCATCATGAAGATAAGTCTAAAGACACCAAATTCAAAAGCCCCAAAAGCTCAGCTAGTCAACTATATGTATATACTCGCAGGAGATTCAGATATATGCATAACAACCGATGATGCCAGGAAAAATAGCAAGAGGCCTCGAAGAGAAGATATAATCAGGCCCCCTTCCCCAATAACGAACTTGGGACAGAAATCAAGAACAGTTGCAGTAAATAATCAGCATGAAAGCGCTTGCTTACAGCCGAGGGCTCTGTTAAAGTGGAAGGTGAAGCAAAGTAAAGGCAGTAGAAGTTTGGATGACGAAGATGGTGGGGGATTTGAGGTGGCGCTCGTGTATTACTGGATTCAAGTGTGGGAAAGGTCAGTGGGTTTGACATTGATAATTTTTGGGCTATTTTTCTATCTTAGCTTGAGTTGCAGCAATGGCAGTGATCTAATTTAG

Protein sequence

MFLVLQERQDKSLRFKVSHSLEQPRENTREGTYSWLQMDISEAKPGIPFATFFSFLSQLAWSTRPTTIMKISLKTPNSKAPKAQLVNYMYILAGDSDICITTDDARKNSKRPRREDIIRPPSPITNLGQKSRTVAVNNQHESACLQPRALLKWKVKQSKGSRSLDDEDGGGFEVALVYYWIQVWERSVGLTLIIFGLFFYLSLSCSNGSDLI
Homology
[Close]
BLAST of ClCG05G026920 vs. TrEMBL
Match: A0A0A0KWY9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624420 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 29 REGTYSWLQMDISEAKPGIPFATFFSFLSQLAWSTRPTTIMKISLKTPNSKAPKAQL 86
          +EGTYSWLQMDISE +P IP ATFFSFLSQLAW T P  IMKI       K P + +
Sbjct: 5  KEGTYSWLQMDISETEPDIPLATFFSFLSQLAWYTSPGMIMKIRRDLEERKYPASAM 61

[Close]
BLAST of ClCG05G026920 vs. NCBI nr
Match: gi|700197154|gb|KGN52331.1| (hypothetical protein Csa_5G624420 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.2e-10
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 1 

Query: 29 REGTYSWLQMDISEAKPGIPFATFFSFLSQLAWSTRPTTIMKISLKTPNSKAPKAQL 86
          +EGTYSWLQMDISE +P IP ATFFSFLSQLAW T P  IMKI       K P + +
Sbjct: 5  KEGTYSWLQMDISETEPDIPLATFFSFLSQLAWYTSPGMIMKIRRDLEERKYPASAM 61

The following BLAST results are available for this feature:
BLAST of ClCG05G026920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWY9_CUCSA1.5e-1063.16Uncharacterized protein OS=Cucumis sativus GN=Csa_5G624420 PE=4 SV=1[more]
BLAST of ClCG05G026920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197154|gb|KGN52331.1|2.2e-1063.16hypothetical protein Csa_5G624420 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G026920.1ClCG05G026920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G026920Csa5G624420Cucumber (Chinese Long) v2cuwcgB390
ClCG05G026920CsaV3_5G036880Cucumber (Chinese Long) v3cucwcgB411
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G026920Cucumber (Gy14) v1cgywcgB531
ClCG05G026920Cucurbita maxima (Rimu)cmawcgB367
ClCG05G026920Cucurbita maxima (Rimu)cmawcgB661
ClCG05G026920Cucurbita moschata (Rifu)cmowcgB361
ClCG05G026920Cucurbita moschata (Rifu)cmowcgB662
ClCG05G026920Wild cucumber (PI 183967)cpiwcgB408
ClCG05G026920Melon (DHL92) v3.5.1mewcgB063
ClCG05G026920Watermelon (97103) v1wcgwmB285
ClCG05G026920Cucurbita pepo (Zucchini)cpewcgB042
ClCG05G026920Cucurbita pepo (Zucchini)cpewcgB396
ClCG05G026920Bottle gourd (USVL1VR-Ls)lsiwcgB291
ClCG05G026920Cucumber (Gy14) v2cgybwcgB355
ClCG05G026920Melon (DHL92) v3.6.1medwcgB062
ClCG05G026920Silver-seed gourdcarwcgB0701
ClCG05G026920Silver-seed gourdcarwcgB0814
ClCG05G026920Watermelon (97103) v2wcgwmbB229
ClCG05G026920Wax gourdwcgwgoB470