ClCG05G026890 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G026890
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	auxin-regulated gene involved in organ size LENGTH=130
Location	CG_Chr05 : 38103823 .. 38104020 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTACGTTGCTTCAACTTAGTGTCCGTTTTCGTCCTCGCCGCCGTTGCGGTTTCCATGGTCGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCGCCACCGCTTGTGTTTCTCTTCTTTCCGGTTGGAATCATGGCGGCGCTTCTTCTCCTCGCTTTTTCCCCCTCCGATGTCGGCGCCGGGAACGTCTTTGTATGA

mRNA sequence

ATGGTACGTTGCTTCAACTTAGTGTCCGTTTTCGTCCTCGCCGCCGTTGCGGTTTCCATGGTCGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCGCCACCGCTTGTGTTTCTCTTCTTTCCGGTTGGAATCATGGCGGCGCTTCTTCTCCTCGCTTTTTCCCCCTCCGATGTCGGCGCCGGGAACGTCTTTGTATGA

Coding sequence (CDS)

ATGGTACGTTGCTTCAACTTAGTGTCCGTTTTCGTCCTCGCCGCCGTTGCGGTTTCCATGGTCGTTCTGCCCTTGGTTCTTCCGCCGCTGCCTCCGCCACCGCTTGTGTTTCTCTTCTTTCCGGTTGGAATCATGGCGGCGCTTCTTCTCCTCGCTTTTTCCCCCTCCGATGTCGGCGCCGGGAACGTCTTTGTATGA

Protein sequence

MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGNVFV

Homology

[Close]

BLAST of ClCG05G026890 vs. Swiss-Prot
Match: ARGOS_ARATH (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.9e-11
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 5   FNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGNVF 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP + L  P+GIM  L++LAF PS     N  
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  V 66
           V
Sbjct: 125 V 125

[Close]

BLAST of ClCG05G026890 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 5   FNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPS 57
           F+L S+ +L  +  S+++LPLVLPPLPPPP + L  P+GIM  L++LAF PS
Sbjct: 72  FSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of ClCG05G026890 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 5   FNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP + L  P+GIM  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of ClCG05G026890 vs. Swiss-Prot
Match: ARGOS_ORYSJ (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica GN=ARGOS PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-08
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 5   FNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGN 63
           F++ S+ +L  V  S+V+LPLVLPPLPPPP + +  PV ++  LL LAF P+   + +
Sbjct: 100 FSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSS 157

[Close]

BLAST of ClCG05G026890 vs. Swiss-Prot
Match: ORS1_ARATH (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 6.4e-06
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 9  SVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          SV +L  +++ +++LP  LPPLPPPP   L  P+ +M  L+ LAFSPS+
Sbjct: 29 SVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSN 77

[Close]

BLAST of ClCG05G026890 vs. TrEMBL
Match: V7BSD6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G025500g PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-18
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF+L SV +LAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GH 60

Query: 61 GNVF 65
          G V+
Sbjct: 61 GVVY 63

[Close]

BLAST of ClCG05G026890 vs. TrEMBL
Match: A0A0S3SKI1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G232000 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-18
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1   MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCF+L SV +LAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GN 160

Query: 61  GNVF 65
           G V+
Sbjct: 161 GVVY 163

[Close]

BLAST of ClCG05G026890 vs. TrEMBL
Match: A0A0L9UI81_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g004200 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-18
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1   MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCF+L SV +LAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GN 160

Query: 61  GNVF 65
           G V+
Sbjct: 161 GVVY 163

[Close]

BLAST of ClCG05G026890 vs. TrEMBL
Match: K7K5P8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G156100 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-18
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          M RCF L SV VLAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of ClCG05G026890 vs. TrEMBL
Match: I1JW38_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G135200 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-17
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          M RCF L SV VLAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LL FSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLVFSPSD 57

[Close]

BLAST of ClCG05G026890 vs. TAIR10
Match: AT3G59900.1 (AT3G59900.1 auxin-regulated gene involved in organ size)

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-12
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1


Query: 5   FNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGAGNVF 64
           F+L S+F+L  +  S+++LPLVLPPLPPPP + L  P+GIM  L++LAF PS     N  
Sbjct: 65  FSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPSSHSNANTD 124

Query: 65  V 66
           V
Sbjct: 125 V 125

[Close]

BLAST of ClCG05G026890 vs. TAIR10
Match: AT2G44080.1 (AT2G44080.1 ARGOS-like)

HSP 1 Score: 66.2 bits (160), Expect = 8.3e-12
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1


Query: 5   FNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPS 57
           F+L S+ VL  +  S+++LPL+LPPLPPPP + L  P+GIM  L++LAF PS
Sbjct: 71  FSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of ClCG05G026890 vs. TAIR10
Match: AT2G41230.1 (AT2G41230.1 unknown protein)

HSP 1 Score: 50.8 bits (120), Expect = 3.6e-07
Identity = 23/49 (46.94%), Postives = 32/49 (65.31%), Query Frame = 1


Query: 9  SVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          SV +L  +++ +++LP  LPPLPPPP   L  P+ +M  L+ LAFSPS+
Sbjct: 29 SVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSN 77

[Close]

BLAST of ClCG05G026890 vs. TAIR10
Match: AT2G41225.1 (AT2G41225.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 6.1e-07
Identity = 22/43 (51.16%), Postives = 28/43 (65.12%), Query Frame = 1


Query: 10 VFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLA 53
          +FV+  V V + VLP VLPPLPPPP++ +  PV +M  L+ LA
Sbjct: 1  MFVIGVVMVLLAVLPAVLPPLPPPPMILMGIPVVLMLMLIYLA 43

[Close]

BLAST of ClCG05G026890 vs. NCBI nr
Match: gi|920699213|gb|KOM42438.1| (hypothetical protein LR48_Vigan05g004200 [Vigna angularis])

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-18
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1   MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
           MVRCF+L SV +LAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 101 MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GN 160

Query: 61  GNVF 65
           G V+
Sbjct: 161 GVVY 163

[Close]

BLAST of ClCG05G026890 vs. NCBI nr
Match: gi|593696882|ref|XP_007148923.1| (hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris])

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-18
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF+L SV +LAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD G 
Sbjct: 1  MVRCFSLGSVLILAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD-GH 60

Query: 61 GNVF 65
          G V+
Sbjct: 61 GVVY 63

[Close]

BLAST of ClCG05G026890 vs. NCBI nr
Match: gi|947081278|gb|KRH30067.1| (hypothetical protein GLYMA_11G156100 [Glycine max])

HSP 1 Score: 97.4 bits (241), Expect = 9.5e-18
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          M RCF L SV VLAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LLAFSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLAFSPSD 57

[Close]

BLAST of ClCG05G026890 vs. NCBI nr
Match: gi|947114524|gb|KRH62826.1| (hypothetical protein GLYMA_04G135200 [Glycine max])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-17
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSD 58
          M RCF L SV VLAA+A SMVVLPL+LPPLPPPPLV LFFPVGIMAAL+LL FSPSD
Sbjct: 1  MARCFGLGSVLVLAALAASMVVLPLMLPPLPPPPLVLLFFPVGIMAALMLLVFSPSD 57

[Close]

BLAST of ClCG05G026890 vs. NCBI nr
Match: gi|224075872|ref|XP_002304806.1| (hypothetical protein POPTR_0003s19440g [Populus trichocarpa])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 1  MVRCFNLVSVFVLAAVAVSMVVLPLVLPPLPPPPLVFLFFPVGIMAALLLLAFSPSDVGA 60
          MVRCF+ VSV +L A+A +M VLPL+LPPLPPPPL+ LFFPVGIMAAL+ LAFSPSD  A
Sbjct: 1  MVRCFSTVSVVILTALAAAMAVLPLLLPPLPPPPLMLLFFPVGIMAALMFLAFSPSDAAA 60

The following BLAST results are available for this feature:

BLAST of ClCG05G026890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARGOS_ARATH	3.9e-11	50.82	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=A...	[more]
ARGOS_BRARP	1.5e-10	53.85	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
ARL_ARATH	1.5e-10	53.85	ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1	[more]
ARGOS_ORYSJ	1.1e-08	44.83	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
ORS1_ARATH	6.4e-06	46.94	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1	[more]

BLAST of ClCG05G026890 vs. TrEMBL


Match Name	E-value	Identity	Description
V7BSD6_PHAVU	1.3e-18	79.69	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G025500g PE=4 SV=1	[more]
A0A0S3SKI1_PHAAN	1.3e-18	79.69	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G232000 PE=...	[more]
A0A0L9UI81_PHAAN	1.3e-18	79.69	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g004200 PE=4 SV=1	[more]
K7K5P8_SOYBN	6.6e-18	84.21	Uncharacterized protein OS=Glycine max GN=GLYMA_11G156100 PE=4 SV=1	[more]
I1JW38_SOYBN	1.9e-17	82.46	Uncharacterized protein OS=Glycine max GN=GLYMA_04G135200 PE=4 SV=1	[more]

BLAST of ClCG05G026890 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59900.1	2.2e-12	50.82	auxin-regulated gene involved in organ size	[more]
AT2G44080.1	8.3e-12	53.85	ARGOS-like	[more]
AT2G41230.1	3.6e-07	46.94	unknown protein	[more]
AT2G41225.1	6.1e-07	51.16	unknown protein	[more]

BLAST of ClCG05G026890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|920699213\|gb\|KOM42438.1\|	1.9e-18	79.69	hypothetical protein LR48_Vigan05g004200 [Vigna angularis]	[more]
gi\|593696882\|ref\|XP_007148923.1\|	1.9e-18	79.69	hypothetical protein PHAVU_005G025500g [Phaseolus vulgaris]	[more]
gi\|947081278\|gb\|KRH30067.1\|	9.5e-18	84.21	hypothetical protein GLYMA_11G156100 [Glycine max]	[more]
gi\|947114524\|gb\|KRH62826.1\|	2.8e-17	82.46	hypothetical protein GLYMA_04G135200 [Glycine max]	[more]
gi\|224075872\|ref\|XP_002304806.1\|	1.1e-16	73.33	hypothetical protein POPTR_0003s19440g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G026890.1	ClCG05G026890.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G026890	Silver-seed gourd	carwcgB0701
ClCG05G026890	Silver-seed gourd	carwcgB0814
ClCG05G026890	Cucumber (Chinese Long) v3	cucwcgB411
ClCG05G026890	Watermelon (97103) v2	wcgwmbB229
ClCG05G026890	Wax gourd	wcgwgoB470
ClCG05G026890	Cucumber (Gy14) v1	cgywcgB531
ClCG05G026890	Cucurbita maxima (Rimu)	cmawcgB367
ClCG05G026890	Cucurbita maxima (Rimu)	cmawcgB661
ClCG05G026890	Cucurbita moschata (Rifu)	cmowcgB361
ClCG05G026890	Cucurbita moschata (Rifu)	cmowcgB662
ClCG05G026890	Wild cucumber (PI 183967)	cpiwcgB408
ClCG05G026890	Cucumber (Chinese Long) v2	cuwcgB390
ClCG05G026890	Melon (DHL92) v3.5.1	mewcgB063
ClCG05G026890	Watermelon (97103) v1	wcgwmB285
ClCG05G026890	Cucurbita pepo (Zucchini)	cpewcgB042
ClCG05G026890	Cucurbita pepo (Zucchini)	cpewcgB396
ClCG05G026890	Bottle gourd (USVL1VR-Ls)	lsiwcgB291
ClCG05G026890	Cucumber (Gy14) v2	cgybwcgB355
ClCG05G026890	Melon (DHL92) v3.6.1	medwcgB062