ClCG05G026880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G026880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Glutamate receptor 2 plant, putative
Location	CG_Chr05 : 38103758 .. 38104093 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAACAAAAAACAAAAAACCGCCGGTCGCCGGATGGCACAATGTTATTCGAATTCCTTCATACAAAGACGTTCCCGGCGCCGACATCGGAGGGGGAAAAAGCGAGGAGAAGAAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAACACAAGCGGTGGCGGAGGCAGCGGCGGAAGAACCAAGGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGACGAAAACGGACACTAAGTTGAAGCAACGTACCATAGCAATTTTCTGGCAGCCGGAGATTGGATCATGTCCTTCAGCGGCGGGAATGCGTGTGAAAAGAATCCGGTGA

mRNA sequence

ATGGAAGAAAAACAAAAAACAAAAAACCGCCGGTCGCCGGATGGCACAATGTTATTCGAATTCCTTCATACAAAGACGTTCCCGGCGCCGACATCGGAGGGGGAAAAAGCGAGGAGAAGAAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAACACAAGCGGTGGCGGAGGCAGCGGCGGAAGAACCAAGGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGACGAAAACGGACACTAAGTTGAAGCAACGTACCATAGCAATTTTCTGGCAGCCGGAGATTGGATCATGTCCTTCAGCGGCGGGAATGCGTGTGAAAAGAATCCGGTGA

Coding sequence (CDS)

ATGGAAGAAAAACAAAAAACAAAAAACCGCCGGTCGCCGGATGGCACAATGTTATTCGAATTCCTTCATACAAAGACGTTCCCGGCGCCGACATCGGAGGGGGAAAAAGCGAGGAGAAGAAGCGCCGCCATGATTCCAACCGGAAAGAAGAGAAACACAAGCGGTGGCGGAGGCAGCGGCGGAAGAACCAAGGGCAGAACGACCATGGAAACCGCAACGGCGGCGAGGACGAAAACGGACACTAAGTTGAAGCAACGTACCATAGCAATTTTCTGGCAGCCGGAGATTGGATCATGTCCTTCAGCGGCGGGAATGCGTGTGAAAAGAATCCGGTGA

Protein sequence

MEEKQKTKNRRSPDGTMLFEFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRTIAIFWQPEIGSCPSAAGMRVKRIR

Homology

[Close]

BLAST of ClCG05G026880 vs. TrEMBL
Match: A0A0A0KWY2_CUCSA (Glutamate receptor 2 plant OS=Cucumis sativus GN=Csa_5G623890 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 28 PAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRT 87
          P  TSEGEKARRRSAAMIPTGKKR+TSGGGG GGRT GRTTMETATAAR +TDTKLKQRT
Sbjct: 3  PTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQRT 62

Query: 88 IAIFWQPEI 97
          IA F Q EI
Sbjct: 63 IATFQQAEI 71

[Close]

BLAST of ClCG05G026880 vs. TrEMBL
Match: B9RG81_RICCO (Glutamate receptor 2 plant, putative OS=Ricinus communis GN=RCOM_1452030 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-09
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 20  EFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKT 79
           E + +  FPA  S G+KA+   AA+IPTGK R++ GGGGSGG +KG TT++ A  A T T
Sbjct: 924 EPIRSTRFPA-VSAGDKAKNIKAAIIPTGKNRSSKGGGGSGGSSKGNTTIDAARTASTAT 983

Query: 80  DTKLKQRTIAI 91
            TK K RTI +
Sbjct: 984 LTKPKHRTIVL 993

[Close]

BLAST of ClCG05G026880 vs. NCBI nr
Match: gi|700197149|gb|KGN52326.1| (Glutamate receptor 2 plant [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 1


Query: 28 PAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKTDTKLKQRT 87
          P  TSEGEKARRRSAAMIPTGKKR+TSGGGG GGRT GRTTMETATAAR +TDTKLKQRT
Sbjct: 3  PTDTSEGEKARRRSAAMIPTGKKRSTSGGGGRGGRTNGRTTMETATAARRRTDTKLKQRT 62

Query: 88 IAIFWQPEI 97
          IA F Q EI
Sbjct: 63 IATFQQAEI 71

[Close]

BLAST of ClCG05G026880 vs. NCBI nr
Match: gi|223548044|gb|EEF49536.1| (glutamate receptor 2 plant, putative [Ricinus communis])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 20  EFLHTKTFPAPTSEGEKARRRSAAMIPTGKKRNTSGGGGSGGRTKGRTTMETATAARTKT 79
           E + +  FPA  S G+KA+   AA+IPTGK R++ GGGGSGG +KG TT++ A  A T T
Sbjct: 924 EPIRSTRFPA-VSAGDKAKNIKAAIIPTGKNRSSKGGGGSGGSSKGNTTIDAARTASTAT 983

Query: 80  DTKLKQRTIAI 91
            TK K RTI +
Sbjct: 984 LTKPKHRTIVL 993

The following BLAST results are available for this feature:

BLAST of ClCG05G026880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWY2_CUCSA	1.4e-23	85.51	Glutamate receptor 2 plant OS=Cucumis sativus GN=Csa_5G623890 PE=4 SV=1	[more]
B9RG81_RICCO	1.1e-09	52.11	Glutamate receptor 2 plant, putative OS=Ricinus communis GN=RCOM_1452030 PE=3 SV...	[more]

BLAST of ClCG05G026880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197149\|gb\|KGN52326.1\|	2.0e-23	85.51	Glutamate receptor 2 plant [Cucumis sativus]	[more]
gi\|223548044\|gb\|EEF49536.1\|	1.6e-09	52.11	glutamate receptor 2 plant, putative [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G026880.1	ClCG05G026880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G026880	CsaV3_5G036830	Cucumber (Chinese Long) v3	cucwcgB411

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G026880	Watermelon (97103) v1	wcgwmB285
ClCG05G026880	Cucurbita pepo (Zucchini)	cpewcgB042
ClCG05G026880	Cucurbita pepo (Zucchini)	cpewcgB396
ClCG05G026880	Bottle gourd (USVL1VR-Ls)	lsiwcgB291
ClCG05G026880	Cucumber (Gy14) v2	cgybwcgB355
ClCG05G026880	Melon (DHL92) v3.6.1	medwcgB062
ClCG05G026880	Silver-seed gourd	carwcgB0701
ClCG05G026880	Silver-seed gourd	carwcgB0814
ClCG05G026880	Watermelon (97103) v2	wcgwmbB229
ClCG05G026880	Wax gourd	wcgwgoB470
ClCG05G026880	Cucumber (Gy14) v1	cgywcgB531
ClCG05G026880	Cucurbita maxima (Rimu)	cmawcgB367
ClCG05G026880	Cucurbita maxima (Rimu)	cmawcgB661
ClCG05G026880	Cucurbita moschata (Rifu)	cmowcgB361
ClCG05G026880	Cucurbita moschata (Rifu)	cmowcgB662
ClCG05G026880	Wild cucumber (PI 183967)	cpiwcgB408
ClCG05G026880	Cucumber (Chinese Long) v2	cuwcgB390
ClCG05G026880	Melon (DHL92) v3.5.1	mewcgB063