ClCG05G023580 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G023580
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 35382997 .. 35386169 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATGAGGTATAACCCTAGGAAGTATATTGTGGGAGAGGTCCATAGGGTTAGCTATGGCTTGCATTCTTTTGGTGTACATATCTCTCATGTTGCCTTGTATGAACTTGTAAGAAGGGCCTTGAATCCCTTGGGACCTCATGAATCTTTGGATTCTCATGGGAGTCCACCAAAATTTGGTCAGCAACTTCATGATGGTGCTGATCAAAAGGACACAACCAAATACAAGACTTGGAATTATAATGTATGTGCTTGCAATATCCATTATTATTGCCTCTTTGTTCTTTGAGTTCATGTTGTTTCTACTCAATTTGGAAAGCATATTTGCCTTGAGGATTTATATATAGTACTAATGCTGTGACAAGAATTTAAAAATGGCTCTTTGGAATCTTCATATATAAGGAAATAATTATTAAATGGCAATGATAACCTTATTGAGATTTCATTTTTTCAAAATATCAAAATGCTTACCTCATTACTTAAGTCATCAACACTTGCCTACACACCAATCAAATATAATTGCACATTATTAATCTATATTTTAGTCTTTCTATTTTTTATTTTCATTCATTTTAGTGTTTATTTCCTTCTAACTTTTGTTTGTTTATAGTTGTATTTCGATCTCTGTACGTCATTTTTGGCATTTCATTTTTATTTTTATTACATTTTACGTAATTAATTAATAGTAATATAAAAAGTGAGATCTATCAAACTACGTCAATTAACAATATTTTATGAATTATGAACTATTAATAAATTTATTGACGAAATGTAGTTGTAAATTTTTATTTATTTAAACAAGAAATTAATAACAAATTTTGCTTAACTTTTGTTTGGTTGAGTCCCATTTTAAGAAAACCTAATAGCAAATTCAATGAGTAAAAAGTTGCACTGATTTTGATTTTGATTAAATGTAAATTGAATTGGGCTTTACCTTTTTTAAGATTGATTCATTTTCTTGATTTCTTTTCATGAATTGTTGGTTTAATTATATTTTTATAGTTTTATTTGTTATTGTCTCCTTTTTGCTTTATAATTAATCTTTCTCTTGGTAATATCACCCCCACTGGATTAACAAACAAATGTAACGCTACAAAAATCAGGAAAAAGACTGTTTTGGGTTTTATACAATTTTGGACGGTCGTCTTTATACTTATAGGAAAAGCTTATAAAAATAAAATTTCGTGTTAGATCATTGTATTAAATTTTCTCGGTACATTGACATTGTCATCAATATTTTTACATTAGAAACAAGAAATCAAATAATTAAATATAATATAGATAATATACCTCCTACCTTATTTAAAAGGTACAAAATGTTTATTTATCAATTTAAATATATGTATTTTTTTTTTAATATTTTTGTTTCTATCGACCTTTTACTGCGACTTCACACTTTCCTTTCTTTTCCCAGAATTACCTGATTGACCAACTACTCACATAAATATATAAATAAGTAAATTCCTCCCTAAATATTCAACATTTTTTTTAAAAAAAATGTTAATAAAAATGGTCATATATTTTTTTAACATAAGTTTTTTAAAGAAAAGTTATTATAAATAAAAAAAAAATATATCATACTATTTACAAATATAACAAAATTTTACTTTTGATAGACCACAATAGACCAAGACAAATATCTACTGATAGATATTTATTTGAGTCTATCATAGATAAAAAGTAAAATTTTGTTTATATTTATAACTATTTTCAATAGTTTTTTTATTTTTGAAACATCATTTTTTTAAATAAATTTACATCATAAACTAATGGATCTATGAAATATAAATTTAAATTATATTTAATGAAACTCTATGATCTCAATTTTGCACCTAGTAAATCTATAAAATTTAAAATATTGAATAGGTTGATGATGAATTAAAAACGAAATTTAGAAGTTTAGGAATTTATTGGTTATGAGATTGAAAGTTTAAGACCTAATTAGACATTTTGTTTAAGTACAATAACTTATTGAACACAAAATTGACACAAACAACATGCGTTGCCTAAACTTGTAATTTAACAATATTAAATACTTTTCACAGTTCTTATTGAATATTTGATCTTCAAATCATGCTTTGCTCACAAACTTAATCGGCAGTGGTTAGAAACAGCACAAAAAATTTGTATTTTATAAATTACAAAACTTTTCACTGTAAATTTTGTACTCTATAAATGTCTTTAATCATAGTCAATCGGTGATTTATACATATATGAATATGTTCTCATATTTTGATGATAAATTAGAATATGCATGTTAAATTAAATATTGTAACACTTGTCTTAGATTCATTAAGACTTTACGGAAAATTGATAAAGAAACCAATTCTTTTCCAATAAGTTTGAACTTATCAAGAAGAAATTGAACTTTCTGTCACTTTTTTCGTAAAATATTGATCATAACTTTACAAAAAAAAGTGACAGTTTCTCATAAAGTGTTATCTTACTTTACTCTCTCCTTATAACTTCCAGATAAGTTTGATAATTCAAACTGACATTAAAAAAATAGTTTTTTTTTAAAAAAATGTCATTTTTGGAATTACCCCGCCCACCTAAATTTTTTCTAAAACTACCCATTTGATGGAACGTACTTTTTCCATNAAGTGACAGTTTCTCATAAAGTGTTATCTTACTTTACTCTCTCCTTATGACTTCCAGATAAGTTTGATAATTCAAACTGACATTAAAAAAATAGTTTTTTTTAAAAAAAATGTCATTTTTGGAATTACCCCGCCCACCTAAATTTTTTCTAAAACTACCCATTTGATGGAACGTACTTTTTCCATGTAATAATGACACCGTCGGATGCTTCTTGACTCCCCAGTCAATGACCACTGGAATCTAGACACGTGTCTCAACCACCACGGCGGCGAGGACGACCACCGATCTATTTAGACCCCTCTCTGTTTTTGCCCCAAAATCACACAAAACAGAGAGATCCAAATGTGGGAATAGCCGGAGAACGGAGGGTCGAAGGCGGCGAAGATCGTGGGGGCAGTGGTGGGGTTCGCCACGTTCATTGGGTGTGTGGCGAGCCTGTTGTCGGCGGACTCTGAAACCACCGGTGATCGGAAAATGATGAAAGCTCCGGGAAAACAGGGGGAACGAATATACAGAGATGAGTTTGAGAAGGATCCCTTTAAGTACTTCAGAGACCTGCGCAAGAACTGA

mRNA sequence

ATGAACATGAGGTATAACCCTAGGAAGTATATTGTGGGAGAGGTCCATAGGGTTAGCTATGGCTTGCATTCTTTTGGTGTACATATCTCTCATGTTGCCTTGTATGAACTTGTAAGAAGGGCCTTGAATCCCTTGGGACCTCATGAATCTTTGGATTCTCATGGGAGTCCACCAAAATTTGGTCAGCAACTTCATGATGGTGCTGATCAAAAGGACACAACCAAATACAAGACTTGGAATTATAATCCGGAGAACGGAGGGTCGAAGGCGGCGAAGATCGTGGGGGCAGTGGTGGGGTTCGCCACGTTCATTGGGTGTGTGGCGAGCCTGTTGTCGGCGGACTCTGAAACCACCGGTGATCGGAAAATGATGAAAGCTCCGGGAAAACAGGGGGAACGAATATACAGAGATGAGTTTGAGAAGGATCCCTTTAAGTACTTCAGAGACCTGCGCAAGAACTGA

Coding sequence (CDS)

ATGAACATGAGGTATAACCCTAGGAAGTATATTGTGGGAGAGGTCCATAGGGTTAGCTATGGCTTGCATTCTTTTGGTGTACATATCTCTCATGTTGCCTTGTATGAACTTGTAAGAAGGGCCTTGAATCCCTTGGGACCTCATGAATCTTTGGATTCTCATGGGAGTCCACCAAAATTTGGTCAGCAACTTCATGATGGTGCTGATCAAAAGGACACAACCAAATACAAGACTTGGAATTATAATCCGGAGAACGGAGGGTCGAAGGCGGCGAAGATCGTGGGGGCAGTGGTGGGGTTCGCCACGTTCATTGGGTGTGTGGCGAGCCTGTTGTCGGCGGACTCTGAAACCACCGGTGATCGGAAAATGATGAAAGCTCCGGGAAAACAGGGGGAACGAATATACAGAGATGAGTTTGAGAAGGATCCCTTTAAGTACTTCAGAGACCTGCGCAAGAACTGA

Protein sequence

MNMRYNPRKYIVGEVHRVSYGLHSFGVHISHVALYELVRRALNPLGPHESLDSHGSPPKFGQQLHDGADQKDTTKYKTWNYNPENGGSKAAKIVGAVVGFATFIGCVASLLSADSETTGDRKMMKAPGKQGERIYRDEFEKDPFKYFRDLRKN
Homology
[Close]
BLAST of ClCG05G023580 vs. TrEMBL
Match: A0A0A0KW91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606810 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.8e-26
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 83  PENGGSKAAKIVGAVVGFATFIGCVASLLSADSETTGDRKMMKAPGKQGERIYRDEFEKD 142
           P+NGGSKAAKIVGAVVGFATFIGCVAS+ SADSET GDR+ MKAPGK GE +YRDEFEKD
Sbjct: 5   PDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDEFEKD 64

Query: 143 PFKYFRDLRK 153
           P KYFRDLRK
Sbjct: 65  PSKYFRDLRK 74

[Close]
BLAST of ClCG05G023580 vs. TrEMBL
Match: A0A067KYR7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15748 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-06
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 84  ENGGSKAAKIVGAVVGFATFIGCVASLLSADSETTGDRKMMKAPGKQGERIYRDEFEKDP 143
           +N GS    ++GAVVG A     +A ++S  S +   RK MKAPGK G RI+RDEFEKDP
Sbjct: 4   KNEGSGLGMLLGAVVGVAAIAYGIAEIVSKPS-SGSSRKTMKAPGKDG-RIFRDEFEKDP 63

Query: 144 FKYFRDLR 152
             YFR+ R
Sbjct: 64  AAYFRNNR 69

[Close]
BLAST of ClCG05G023580 vs. NCBI nr
Match: gi|700196814|gb|KGN51991.1| (hypothetical protein Csa_5G606810 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1 

Query: 83  PENGGSKAAKIVGAVVGFATFIGCVASLLSADSETTGDRKMMKAPGKQGERIYRDEFEKD 142
           P+NGGSKAAKIVGAVVGFATFIGCVAS+ SADSET GDR+ MKAPGK GE +YRDEFEKD
Sbjct: 5   PDNGGSKAAKIVGAVVGFATFIGCVASMFSADSETAGDRRTMKAPGKHGEEMYRDEFEKD 64

Query: 143 PFKYFRDLRK 153
           P KYFRDLRK
Sbjct: 65  PSKYFRDLRK 74

[Close]
BLAST of ClCG05G023580 vs. NCBI nr
Match: gi|643734671|gb|KDP41341.1| (hypothetical protein JCGZ_15748 [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 84  ENGGSKAAKIVGAVVGFATFIGCVASLLSADSETTGDRKMMKAPGKQGERIYRDEFEKDP 143
           +N GS    ++GAVVG A     +A ++S  S +   RK MKAPGK G RI+RDEFEKDP
Sbjct: 4   KNEGSGLGMLLGAVVGVAAIAYGIAEIVSKPS-SGSSRKTMKAPGKDG-RIFRDEFEKDP 63

Query: 144 FKYFRDLR 152
             YFR+ R
Sbjct: 64  AAYFRNNR 69

The following BLAST results are available for this feature:
BLAST of ClCG05G023580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW91_CUCSA1.8e-2685.71Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606810 PE=4 SV=1[more]
A0A067KYR7_JATCU1.2e-0651.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15748 PE=4 SV=1[more]
BLAST of ClCG05G023580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700196814|gb|KGN51991.1|2.6e-2685.71hypothetical protein Csa_5G606810 [Cucumis sativus][more]
gi|643734671|gb|KDP41341.1|1.8e-0651.47hypothetical protein JCGZ_15748 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G023580.1ClCG05G023580.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G023580Csa5G606810Cucumber (Chinese Long) v2cuwcgB394
ClCG05G023580MELO3C012162Melon (DHL92) v3.5.1mewcgB062
ClCG05G023580Bhi07G001208Wax gourdwcgwgoB467
ClCG05G023580CSPI05G24440Wild cucumber (PI 183967)cpiwcgB412
ClCG05G023580Cucsa.284400Cucumber (Gy14) v1cgywcgB498
ClCG05G023580CmaCh18G010950Cucurbita maxima (Rimu)cmawcgB364
ClCG05G023580CmoCh18G011170Cucurbita moschata (Rifu)cmowcgB358
ClCG05G023580Lsi04G003510Bottle gourd (USVL1VR-Ls)lsiwcgB283
ClCG05G023580Cp4.1LG09g02360Cucurbita pepo (Zucchini)cpewcgB045
ClCG05G023580MELO3C012162.2Melon (DHL92) v3.6.1medwcgB061
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G023580Silver-seed gourdcarwcgB0099
ClCG05G023580Silver-seed gourdcarwcgB0580
ClCG05G023580Cucumber (Chinese Long) v3cucwcgB069
ClCG05G023580Cucumber (Chinese Long) v3cucwcgB415
ClCG05G023580Watermelon (97103) v2wcgwmbB229
ClCG05G023580Watermelon (97103) v2wcgwmbB233
ClCG05G023580Wax gourdwcgwgoB424
ClCG05G023580Watermelon (Charleston Gray)wcgwcgB070
ClCG05G023580Watermelon (Charleston Gray)wcgwcgB155
ClCG05G023580Cucumber (Gy14) v1cgywcgB162
ClCG05G023580Cucurbita maxima (Rimu)cmawcgB124
ClCG05G023580Wild cucumber (PI 183967)cpiwcgB065
ClCG05G023580Melon (DHL92) v3.5.1mewcgB249
ClCG05G023580Watermelon (97103) v1wcgwmB285
ClCG05G023580Watermelon (97103) v1wcgwmB308
ClCG05G023580Cucurbita pepo (Zucchini)cpewcgB610
ClCG05G023580Bottle gourd (USVL1VR-Ls)lsiwcgB245
ClCG05G023580Bottle gourd (USVL1VR-Ls)lsiwcgB367
ClCG05G023580Cucumber (Gy14) v2cgybwcgB359
ClCG05G023580Melon (DHL92) v3.6.1medwcgB241