ClCG05G021730 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G021730
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 33821451 .. 33821841 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCAAGCCAAATTTCGTCCCTCCATTGATCTTTATGTACTACCGCTTTCCGATTCCGAAAACCTAATTCCTTGAGATTTAGCTTGCAATCGGTGTTTTCGGTCACCTGCTGCATTTTTCCCTCTAATGCCTGCATTACTGCCAGGAGTTTAGAGTTTCGGTCCTTTGTTTTACCATGGATGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGAATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTGTCGGTGCTGCTCTCTCAGATCGTTCGATTGCTGCTGAAATGTCCGAGGATTCTATCACTCAG

mRNA sequence

ATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCAAGCCAAATTTCGTCCCTCCATTGATCTTTATGAGTTTAGAGTTTCGGTCCTTTGTTTTACCATGGATGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGAATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTGTCGGTGCTGCTCTCTCAGATCGTTCGATTGCTGCTGAAATGTCCGAGGATTCTATCACTCAG

Coding sequence (CDS)

ATGCATTTTCTCTCCATTTCTTCTCTTGCTGCAACCGTCGCCATCAATCAAGCCAAATTTCGTCCCTCCATTGATCTTTATGAGTTTAGAGTTTCGGTCCTTTGTTTTACCATGGATGGCTCTGTAGCGGAGGATATCGAAGGTCCTGAGTCATGGAAGGTCGCAGCGTTGAATGAGGCCGTGAGACAATTGAATTCCAAATCCTTGGAGCATTTTGTTGTCGGTGCTGCTCTCTCAGATCGTTCGATTGCTGCTGAAATGTCCGAGGATTCTATCACTCAG

Protein sequence

MHFLSISSLAATVAINQAKFRPSIDLYEFRVSVLCFTMDGSVAEDIEGPESWKVAALNEAVRQLNSKSLEHFVVGAALSDRSIAAEMSEDSITQ
Homology
[Close]
BLAST of ClCG05G021730 vs. TrEMBL
Match: A0A0A0KWM8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615190 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.3e-13
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 1  MHFLSISSLAATVAINQAKFRPSID-------LYEFRVSVLCFTMDGSVAEDIEGPESWK 60
          MHFLSISSLA  V   +    PSI        + EFRVSVLCFT +GS AE+IEGPESWK
Sbjct: 1  MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60

Query: 61 VAALNEAVRQLNS 67
          VA L+EAVRQ NS
Sbjct: 61 VAELDEAVRQRNS 73

[Close]
BLAST of ClCG05G021730 vs. NCBI nr
Match: gi|700197019|gb|KGN52196.1| (hypothetical protein Csa_5G615190 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-12
Identity = 46/73 (63.01%), Postives = 51/73 (69.86%), Query Frame = 1 

Query: 1  MHFLSISSLAATVAINQAKFRPSID-------LYEFRVSVLCFTMDGSVAEDIEGPESWK 60
          MHFLSISSLA  V   +    PSI        + EFRVSVLCFT +GS AE+IEGPESWK
Sbjct: 1  MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLILEFRVSVLCFTTEGSAAENIEGPESWK 60

Query: 61 VAALNEAVRQLNS 67
          VA L+EAVRQ NS
Sbjct: 61 VAELDEAVRQRNS 73

The following BLAST results are available for this feature:
BLAST of ClCG05G021730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWM8_CUCSA9.3e-1363.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G615190 PE=4 SV=1[more]
BLAST of ClCG05G021730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700197019|gb|KGN52196.1|1.3e-1263.01hypothetical protein Csa_5G615190 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G021730.1ClCG05G021730.1mRNA