ClCG05G021260 (gene) Watermelon (Charleston Gray)

NameClCG05G021260
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRibonuclease H-like superfamily protein LENGTH=575
LocationCG_Chr05 : 33262550 .. 33264592 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGGTTGGTAAAAGTTCATCTTCCATGTCATCAGAGGAAAAAGGGGTGGAAATTTAGAAATTATATTCTCCATATGAATATTGACGGAATGACACCGATTTTACAGTTTCCTCTATTTCCTTCTCCTATAAGAAATAAATAAATAACATATTCCAATGTGTTCAGTTTAGACGAAGTCCAATTGCTTCGGTTTTCAGCAATATAGATCAAGCCACAGATAAACGAATATATATAAACAAAGGTAACCTGAGAATCGATAATTTTGCCGAACCGATTGAAGGCATTCTCAAGCTGACGCTCCGTGATGTCCCACGACAACCCTCCCACAAATATTCGGTATTCTTCTCTTCCAGCCATATCAATCTCCCGATTTCAGAAAGAAAAAAGAAATCCTCCTGCACAGCAAAAACCAAGGTAATTAGGGAAATGGAAGCAAAATTTAAGACGAAAATCGGCGAGAATGAAAAGCATCCAGTAGGTTTCGTACCGTAAACAACAATTGATACTGAGAATTTGGAGAAAATGGTGAAAGTGGAGAAAGGGAAATACCTAGTTCGTGCGGTTAGAGTGAAATGTTCTGATAGAATGAGTCCTCGCCTCGTTTCTAGAGATTCCCGAAAAACCCTAGAAAATAAATTTGTAACTACACGCGATATTTATTTATTTTTCATTTTTAAATTAAAACTTCTCCAAAATTATATATAGAACACTATATTTGCACCGATGGCCCATTTTGAAGGACTTGTTTGACAGAAAATTTAAAAAGAAATATTCAATAAAAATAGAATTGTTTCTATGTTTTCATATATGTGTTTGTGTTTGGTAGCATTTTTTAAATTTTAATTTTAATTTAAATAATTTTTCAAAATATCTTTAATAATAACTTACTATATACAAAAGATACAAAAGGGAAATCTTTAATTCCCAACTTGCCCTTAATTTTGTTGATAATGTCCATTTTACCTTCACAATCACACCTCTTCATTGTGGGTGTGTCTTTTATTCTTTTTTTAATTTATTTTGTTTCTCTCATTTAATTTTATATTTTACATTTTACCTTTTACCTTTTCATTGGATCTTCTGGAATTCTAAATCTAAACTTTTTTTTTATTTATTTTAAGGAGATATAACTATTTGAAGTTTTTTCTCCAAAATTTGAGGTTACAAATCCAAAGTCGACAACTCATCTCTTCCAGAAGTGTTACGTGACTAAAGTAATTTGACGTCATTTTTTCCAAGCTAATGTTGTGTTGTTTTTGTGTGGCAAGAGCATGTAGTCGCACGCTAGATCATTTTAGGTGGATTTAGGAGCATGGCGTCCATGGTGAGGTGGTGACATTTTTGTGGTGTGTGGTGCATCTGGGAGGCTCGTAATCGTGTTGTTTTTCAAAGGGAGGAGGGTGCTTTGATTATCCTGATCGATTATATTCGGGGGTTCCTTTTGGAGTATTGGAGCACATCCAGTGTGGGAGTAAGGGTGAATGTGGGTCGGTGAGACGTGGTAATAAGGGATGATGCAGCTTACAGTAAAGAAGGTAGGTGGGTTTGCCTCCCGAATGGGTGTCTGCCTTTGTCTTGTGATGTCTTTTGGGATGCAAAGGAATGCAAGAGCGGTATAGGTTGGGTGTTACGAGACCATATGGGTGAGCTCATTACTGCGAATGGGAGGGTTGTTCGAGGTTTGTTCAATGTATTGTTTATTGAGGTTCAGGCAGTTGTAGTTGGTTTACATGTGGTCAGCTCGATTGTGAAATTGTCATTAGTGGTGGAGTCGGCTAATGTGATCGGAGTGCGATTACTGAATGGTGAGGAAGTTGTATTAACACTTGTGCAATCTATGGTGGAAGAAAATATTGTTCACAAGAACTCAGTAGGATATTCATGTTCCTCACATTCGAAGATCTCAAAACTTGGTGGCAAATGGTATAGCCCGTTAGGCTAAAATGGAGCAGAGTCTCATTGTTGGTGATGTGATTTTCCTAATTGGCTTTGTAGTTTGGTTGAAGTGGATTCGACCTCAATGTCTGGGTAATTTAG

mRNA sequence

ATGGCTTCGGTTGGTAAAAGTTCATCTTCCATGTCATCAGAGGAAAAAGGGTTTAGACGAAGTCCAATTGCTTCGGTTTTCAGCAATATAGATCAAGCCACAGATAAACGAATATATATAAACAAAGGTAACCTGAGAATCGATAATTTTGCCGAACCGATTGAAGGCATTCTCAAGCTGACGCTCCGTGATGTCCCACGACAACCCTCCCACAAATATTCGGTATTCTTCTCTTCCAGCCATATCAATCTCCCGATTTCAGAAAGAAAAAAGAAATCCTCCTGCACAGCAAAAACCAAGGTAATTAGGGAAATGGAAGCAAAATTTAAGACGAAAATCGGCGAGAATGAAAAGCATCCAGTAGGTTTCAAAATGGTGAAAGTGGAGAAAGGGAAATACCTAGTTCGTGCGGTTAGAGTGAAATGTTCTGATAGAATGAGTCCTCGCCTCGTTTCTAGAGATTCCCGAAAAACCCTAGAAAATAAATTTGGAGGAGGGTGCTTTGATTATCCTGATCGATTATATTCGGGGGTTCCTTTTGGAGTATTGGAGCACATCCAGTGTGGGAACGTGGTAATAAGGGATGATGCAGCTTACAGTAAAGAAGGTAGGTGGGTTTGCCTCCCGAATGGGTGTCTGCCTTTGTCTTGTGATGTCTTTTGGGATGCAAAGGAATGCAAGAGCGGTATAGGTTGGGTGTTACGAGACCATATGGGTGAGCTCATTACTGCGAATGGGAGGGTTGTTCGAGGTTTGTTCAATGTATTGTTTATTGAGGTTCAGGCAGTTGTAGTTGGTTTACATGTGGTCAGCTCGATTGTGAAATTGTCATTAGTGGTGGAGTCGGCTAATGTGATCGGAGTGCGATTACTGAATGGTGAGGAAGTTGTATTAACACTTGTGCAATCTATGGTGGAAGAAAATATTGTTCACAAGAACTCAGTAGGATATTCATGTTCCTCACATTCGAAGATCTCAAAACTTGGTGGCAAATGTGGATTCGACCTCAATGTCTGGGTAATTTAG

Coding sequence (CDS)

ATGGCTTCGGTTGGTAAAAGTTCATCTTCCATGTCATCAGAGGAAAAAGGGTTTAGACGAAGTCCAATTGCTTCGGTTTTCAGCAATATAGATCAAGCCACAGATAAACGAATATATATAAACAAAGGTAACCTGAGAATCGATAATTTTGCCGAACCGATTGAAGGCATTCTCAAGCTGACGCTCCGTGATGTCCCACGACAACCCTCCCACAAATATTCGGTATTCTTCTCTTCCAGCCATATCAATCTCCCGATTTCAGAAAGAAAAAAGAAATCCTCCTGCACAGCAAAAACCAAGGTAATTAGGGAAATGGAAGCAAAATTTAAGACGAAAATCGGCGAGAATGAAAAGCATCCAGTAGGTTTCAAAATGGTGAAAGTGGAGAAAGGGAAATACCTAGTTCGTGCGGTTAGAGTGAAATGTTCTGATAGAATGAGTCCTCGCCTCGTTTCTAGAGATTCCCGAAAAACCCTAGAAAATAAATTTGGAGGAGGGTGCTTTGATTATCCTGATCGATTATATTCGGGGGTTCCTTTTGGAGTATTGGAGCACATCCAGTGTGGGAACGTGGTAATAAGGGATGATGCAGCTTACAGTAAAGAAGGTAGGTGGGTTTGCCTCCCGAATGGGTGTCTGCCTTTGTCTTGTGATGTCTTTTGGGATGCAAAGGAATGCAAGAGCGGTATAGGTTGGGTGTTACGAGACCATATGGGTGAGCTCATTACTGCGAATGGGAGGGTTGTTCGAGGTTTGTTCAATGTATTGTTTATTGAGGTTCAGGCAGTTGTAGTTGGTTTACATGTGGTCAGCTCGATTGTGAAATTGTCATTAGTGGTGGAGTCGGCTAATGTGATCGGAGTGCGATTACTGAATGGTGAGGAAGTTGTATTAACACTTGTGCAATCTATGGTGGAAGAAAATATTGTTCACAAGAACTCAGTAGGATATTCATGTTCCTCACATTCGAAGATCTCAAAACTTGGTGGCAAATGTGGATTCGACCTCAATGTCTGGGTAATTTAG

Protein sequence

MASVGKSSSSMSSEEKGFRRSPIASVFSNIDQATDKRIYINKGNLRIDNFAEPIEGILKLTLRDVPRQPSHKYSVFFSSSHINLPISERKKKSSCTAKTKVIREMEAKFKTKIGENEKHPVGFKMVKVEKGKYLVRAVRVKCSDRMSPRLVSRDSRKTLENKFGGGCFDYPDRLYSGVPFGVLEHIQCGNVVIRDDAAYSKEGRWVCLPNGCLPLSCDVFWDAKECKSGIGWVLRDHMGELITANGRVVRGLFNVLFIEVQAVVVGLHVVSSIVKLSLVVESANVIGVRLLNGEEVVLTLVQSMVEENIVHKNSVGYSCSSHSKISKLGGKCGFDLNVWVI
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G021260.1ClCG05G021260.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 217..296
score: 1.

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G021260Melon (DHL92) v3.6.1medwcgB061
ClCG05G021260Melon (DHL92) v3.6.1medwcgB285
ClCG05G021260Silver-seed gourdcarwcgB0258
ClCG05G021260Silver-seed gourdcarwcgB0467
ClCG05G021260Silver-seed gourdcarwcgB0661
ClCG05G021260Silver-seed gourdcarwcgB0816
ClCG05G021260Cucumber (Chinese Long) v3cucwcgB415
ClCG05G021260Watermelon (97103) v2wcgwmbB229
ClCG05G021260Watermelon (97103) v2wcgwmbB244
ClCG05G021260Wax gourdwcgwgoB460
ClCG05G021260Wax gourdwcgwgoB469
ClCG05G021260Watermelon (Charleston Gray)wcgwcgB167
ClCG05G021260Cucumber (Gy14) v1cgywcgB530
ClCG05G021260Cucumber (Gy14) v1cgywcgB662
ClCG05G021260Cucurbita maxima (Rimu)cmawcgB263
ClCG05G021260Cucurbita maxima (Rimu)cmawcgB364
ClCG05G021260Cucurbita maxima (Rimu)cmawcgB655
ClCG05G021260Cucurbita maxima (Rimu)cmawcgB664
ClCG05G021260Cucurbita moschata (Rifu)cmowcgB253
ClCG05G021260Cucurbita moschata (Rifu)cmowcgB358
ClCG05G021260Cucurbita moschata (Rifu)cmowcgB654
ClCG05G021260Cucurbita moschata (Rifu)cmowcgB665
ClCG05G021260Wild cucumber (PI 183967)cpiwcgB412
ClCG05G021260Cucumber (Chinese Long) v2cuwcgB394
ClCG05G021260Melon (DHL92) v3.5.1mewcgB062
ClCG05G021260Melon (DHL92) v3.5.1mewcgB292
ClCG05G021260Watermelon (97103) v1wcgwmB274
ClCG05G021260Watermelon (97103) v1wcgwmB285
ClCG05G021260Cucurbita pepo (Zucchini)cpewcgB045
ClCG05G021260Cucurbita pepo (Zucchini)cpewcgB388
ClCG05G021260Cucurbita pepo (Zucchini)cpewcgB398
ClCG05G021260Bottle gourd (USVL1VR-Ls)lsiwcgB283
ClCG05G021260Bottle gourd (USVL1VR-Ls)lsiwcgB435
ClCG05G021260Cucumber (Gy14) v2cgybwcgB359
ClCG05G021260Cucumber (Gy14) v2cgybwcgB434