ClCG05G019880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G019880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Peroxisomal multifunctional enzyme type 2
Location	CG_Chr05 : 32097968 .. 32100364 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGTTCATAGCACCATCAATTCACTTCTCTTCTCAATTCTCTTTCACAGTGTTAAAACCCCATTGTATCCCCCATAACTGTAAACGCCAGAGCTTTGTCTACGCTCCATTTTCCTCCATCTCTCTCTCTCCAAGTTTTGCTCTCACGTCGTTGCCAATGGCGAACTCCGCTGATTCTCCCCTCAAATCCGATGCTCTTTTGGAGCAGATGAAGCAGTATCTCACCACCGATGCTGGAAAAGAGATCCTCAAGAAAGTCGGCCATGTTTATCAGATCAATATTTCTCCCAAGGTCTCTCTCTCTCTCTCGTGTAATTTTTCTAATTTGCAGGTGTGTTGGAAGTTCTTAATCCGAAGTGAATTGTTGTCAGAAAATTGGAACTGATGAGGTGGTTTATACCATTGATCTCAAGAAAGGGGAAGTTACCAAAGGTTAGGGTTTCTATTTTCTTGAATTCGGAGATTTTTCTCGCGTGAGACGTCGATTTACTCGACTCGATACACTGATTTCTGAATGCTTTTACCCCGTCTCCTTTCAATTTTGTTTTTGATCGTTCAAATTTACAGTCCACATCCAATGCTTTTAGATTATGGTGAAAGGTGGATTTATCTCCTAAGCTTAATGCCTTGTGCTCGAACTAGCCTGTATTTGACTACGGTCATAATAACTCCGGATGAATTTCGAGTTTTTAGAAGTTTGTTTTAGCATTATGACCGTCAATTTTCAATTGCATTCGTCATCTTCTTGGTATCAAACAATTGTAACCTTTTAGAAGTGGCATTCGATATTTATATGCTTTGGCTGGAGAATTGAGAAAAGCATTCTGATTGTTTTGAGCTCAGGTCCATATGAAGGAGGAAAGCCAGACGCTACCTTATCCTTCAAGGACGAAGATTTCGTTAAAATTGCTTTGGGGAAGCTGAATCCTCAGATTGCTTTCTTGAGGTATTTTAGGTCATTTTATCATCATTTTTGGTTCTGGTTCTGCCTTCTCGCACTACTGTTTACGTATTTACAGTGAATTTAGCATGACTTTGAAGTCAAGGATGTTTCTTTATCAGTTAGAAATGCTTTTAAAATTTGTCATAATGTTTAGTTTATGGCTAAGAGGTCGGTGAGTTAGGAATGACTTTTAAGTGTGACACTTTTTCATGGAAATACCAATTAGGTGCTTCCTCCAAAAGTACTTCATGGTTTCTTTTCCTGCTTTTTTTTTTTCTTTCAGAATTCTGTATTTCATTTGAATACTATGAGAATCTGGAAATGCTTTTTTATCGGCTAGAAATACTTTCCACCATCCTTAAATTCATATTCATACTAAACTCCAGAAATACTCGAGTGGTGTTTCTTTCAGAAATGGTTATTGAATACGTTCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCAAGTCATACAAAACTCACTATTACAATAGTACTAGCTTTACAGAAATAGTGTAAACTCCGCAGGGGTGCTCTGAAAATCAAGGGCAGCATCGCCGCGGCACAGAAATTCACTCCCGACATCTTCCCCAAGCCTGCTAAGTTATGAGCGGACGCAAGAGGGAAACTGCTGTTCCTGAAGCCACTCCACATTATCAGTGTTGGGTAATGTATGAGTATTTAGACAAGAAAAGCTAAAAGAATCTGCTTCAATTGTCTCTAAATCAATAATTTCAGTGTCAAAGTATTAGTCCAATTCTCTTGTAGGATATCATGTTGCATTTATTTTGTCCGAGATGTCATATGTGTTAGAAACCGAGGTAATATGGGCTATCTTTGTCCCCACCTCAATAGTTGACTTTTGGGGCGTGGTTCTCTAAGATGCTTTAAGTACTTAAACATGTTTAGGCTGTCAGCACTTTCATCTCACCCTTTTTTTTTCCCTAAATCAATGTCATTATTCTGTGCTTACAATTATGCTTAGTGTCACATCTTCCTGCAAGTTCGTTGGTTTGTTGATCCA

mRNA sequence

ATGCGTGTTCATAGCACCATCAATTCACTTCTCTTCTCAATTCTCTTTCACAGTGTTAAAACCCCATTGTATCCCCCATAACTGTAAACGCCAGAGCTTTGTCTACGCTCCATTTTCCTCCATCTCTCTCTCTCCAAGTTTTGCTCTCACGTCGTTGCCAATGGCGAACTCCGCTGATTCTCCCCTCAAATCCGATGCTCTTTTGGAGCAGATGAAGCAGTATCTCACCACCGATGCTGGAAAAGAGATCCTCAAGAAAGTCGGCCATGTTTATCAGATCAATATTTCTCCCAAGAAAATTGGAACTGATGAGGTGGTTTATACCATTGATCTCAAGAAAGGGGAAGTTACCAAAGGTCCATATGAAGGAGGAAAGCCAGACGCTACCTTATCCTTCAAGGACGAAGATTTCGTTAAAATTGCTTTGGGGAAGCTGAATCCTCAGATTGCTTTCTTGAGGGGTGCTCTGAAAATCAAGGGCAGCATCGCCGCGGCACAGAAATTCACTCCCGACATCTTCCCCAAGCCTGCTAAGTTATGAGCGGACGCAAGAGGGAAACTGCTGTTCCTGAAGCCACTCCACATTATCAGTGTTGGGTAATGTATGAGTATTTAGACAAGAAAAGCTAAAAGAATCTGCTTCAATTGTCTCTAAATCAATAATTTCAGTGTCAAAGTATTAGTCCAATTCTCTTGTAGGATATCATGTTGCATTTATTTTGTCCGAGATGTCATATGTGTTAGAAACCGAGGTAATATGGGCTATCTTTGTCCCCACCTCAATAGTTGACTTTTGGGGCGTGGTTCTCTAAGATGCTTTAAGTACTTAAACATGTTTAGGCTGTCAGCACTTTCATCTCACCCTTTTTTTTTCCCTAAATCAATGTCATTATTCTGTGCTTACAATTATGCTTAGTGTCACATCTTCCTGCAAGTTCGTTGGTTTGTTGATCCA

Coding sequence (CDS)

ATGGCGAACTCCGCTGATTCTCCCCTCAAATCCGATGCTCTTTTGGAGCAGATGAAGCAGTATCTCACCACCGATGCTGGAAAAGAGATCCTCAAGAAAGTCGGCCATGTTTATCAGATCAATATTTCTCCCAAGAAAATTGGAACTGATGAGGTGGTTTATACCATTGATCTCAAGAAAGGGGAAGTTACCAAAGGTCCATATGAAGGAGGAAAGCCAGACGCTACCTTATCCTTCAAGGACGAAGATTTCGTTAAAATTGCTTTGGGGAAGCTGAATCCTCAGATTGCTTTCTTGAGGGGTGCTCTGAAAATCAAGGGCAGCATCGCCGCGGCACAGAAATTCACTCCCGACATCTTCCCCAAGCCTGCTAAGTTATGA

Protein sequence

MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFPKPAKL

Homology

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BLAST of ClCG05G019880 vs. Swiss-Prot
Match: DHB4_RAT (Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1


Query: 25  DAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKG--EVTKGPYEGGKPDATLSFKDE 84
           D G+E++KKV  V++ +I+  K G     +TIDLK G  EV +GP +G   D T++  DE
Sbjct: 636 DVGREVVKKVNAVFEWHIT--KNGNVAAKWTIDLKNGSGEVYQGPAKGSA-DTTITISDE 695

Query: 85  DFVKIALGKLNPQIAFLRGALKIKGSIAAAQK 115
           DF+++ LGKLNPQ AF  G LK +G+I  +QK
Sbjct: 696 DFMEVVLGKLNPQNAFFSGRLKARGNIMLSQK 724

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BLAST of ClCG05G019880 vs. Swiss-Prot
Match: NLTP1_CAEEL (Non-specific lipid-transfer protein-like 1 OS=Caenorhabditis elegans GN=nlt-1 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-12
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1


Query: 10  KSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGEVTKGPYE 69
           KSD + E++K+ + TD  KE++KKVG  +++ I+     T   V+TID K      G   
Sbjct: 4   KSDVIFEEIKERIATD--KEMVKKVGTSFRMTIAGADGKTK--VWTIDAKSDTPYVGDDS 63

Query: 70  GGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFPKPAK 126
               +  ++ KD DF+ IA GK+ P  AF++G +K+KG+IA A K    + PK  K
Sbjct: 64  SRPVEIEINIKDSDFIAIAAGKMKPDQAFMQGKMKLKGNIAKAMKLRTILDPKMLK 115

[Close]

BLAST of ClCG05G019880 vs. Swiss-Prot
Match: DHB4_HUMAN (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 6.8e-12
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 1


Query: 4   SADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKG-- 63
           S    L+S  + E++ + L  D G E++KKV  V++ +I+  K G     +TIDLK G  
Sbjct: 617 SEGGKLQSTFVFEEIGRRLK-DIGPEVVKKVNAVFEWHIT--KGGNIGAKWTIDLKSGSG 676

Query: 64  EVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQK 115
           +V +GP +G   D T+   DEDF+++ LGKL+PQ AF  G LK +G+I  +QK
Sbjct: 677 KVYQGPAKGAA-DTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQK 725

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BLAST of ClCG05G019880 vs. Swiss-Prot
Match: DHB4_MOUSE (Peroxisomal multifunctional enzyme type 2 OS=Mus musculus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-11
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1


Query: 27  GKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKG--EVTKGPYEGGKPDATLSFKDEDF 86
           G+E++KK   V++ +I+  K GT    +TIDLK G  EV +GP +G   D T+   DEDF
Sbjct: 638 GREVVKKANAVFEWHIT--KGGTVAAKWTIDLKSGSGEVYQGPAKGSA-DVTIIISDEDF 697

Query: 87  VKIALGKLNPQIAFLRGALKIKGSIAAAQK 115
           +++  GKL+PQ AF  G LK +G+I  +QK
Sbjct: 698 MEVVFGKLDPQKAFFSGRLKARGNIMLSQK 724

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BLAST of ClCG05G019880 vs. Swiss-Prot
Match: NLTP_HUMAN (Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 34/112 (30.36%), Postives = 62/112 (55.36%), Query Frame = 1


Query: 3   NSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGE 62
           +SA    K++ + +++++ L  + G++ +KK+G ++   +     G  E  + +D+K G+
Sbjct: 425 SSASDGFKANLVFKEIEKKLEEE-GEQFVKKIGGIFAFKVKDGP-GGKEATWVVDVKNGK 484

Query: 63  VTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQK 115
            +  P    K D T++  D DF+ +  GK+NPQ AF +G LKI G++  A K
Sbjct: 485 GSVLPNSDKKADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMK 534

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BLAST of ClCG05G019880 vs. TrEMBL
Match: A0A0A0L4V5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639790 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 7.0e-56
Identity = 110/126 (87.30%), Postives = 122/126 (96.83%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANS++S LKSDALL+QMKQ+L+TDAGKEI KKVG+VYQ+NISPKKIGTD VVYTIDLKK
Sbjct: 1   MANSSNSSLKSDALLDQMKQHLSTDAGKEIAKKVGYVYQLNISPKKIGTDVVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEV KGPYEGGKPDATLSFKDEDF+KIALGK+NPQ+AFLRGAL+IKGSI+AAQKFTPDIF
Sbjct: 61  GEVIKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALQIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

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BLAST of ClCG05G019880 vs. TrEMBL
Match: C6T1B1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G082800 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.4e-50
Identity = 97/126 (76.98%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MA+S+ S LKSDA++EQMKQ+L TD+GK++ KK+G VYQI I+PKK+G DEVVYT+DL+K
Sbjct: 1   MADSS-SNLKSDAIMEQMKQHLATDSGKQVTKKIGLVYQIQIAPKKLGIDEVVYTVDLRK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEVTKGPYEGGKPDA+ SFKDEDFVK+ALGK+NPQIAF+RGA+KIKGS++AAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDASFSFKDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKP+KL
Sbjct: 121 PKPSKL 125

[Close]

BLAST of ClCG05G019880 vs. TrEMBL
Match: A0A0B2RV47_GLYSO (Peroxisomal multifunctional enzyme type 2 OS=Glycine soja GN=glysoja_037587 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.4e-50
Identity = 97/126 (76.98%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MA+S+ S LKSDA++EQMKQ+L TD+GK++ KK+G VYQI I+PKK+G DEVVYT+DL+K
Sbjct: 1   MADSS-SNLKSDAIMEQMKQHLATDSGKQVTKKIGLVYQIQIAPKKLGIDEVVYTVDLRK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEVTKGPYEGGKPDA+ SFKDEDFVK+ALGK+NPQIAF+RGA+KIKGS++AAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDASFSFKDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKP+KL
Sbjct: 121 PKPSKL 125

[Close]

BLAST of ClCG05G019880 vs. TrEMBL
Match: A0A059BRL1_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02346 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.4e-50
Identity = 95/125 (76.00%), Postives = 116/125 (92.80%), Query Frame = 1


Query: 2   ANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKG 61
           ++S+ + LKSDAL+EQMKQ+L+TDAGK + KK+G VYQINI+PKKIG DEVVY +DLKKG
Sbjct: 3   SDSSATQLKSDALMEQMKQHLSTDAGKAVTKKIGLVYQINIAPKKIGFDEVVYIVDLKKG 62

Query: 62  EVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFP 121
           EVTKGPYEGGKPDAT SFKD+DF+K+A GK+NPQIAF+RGA+KIKGS++AAQKFTPDIFP
Sbjct: 63  EVTKGPYEGGKPDATFSFKDDDFIKVATGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFP 122

Query: 122 KPAKL 127
           KP+K+
Sbjct: 123 KPSKM 127

[Close]

BLAST of ClCG05G019880 vs. TrEMBL
Match: A0A0K9RFC6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078760 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-50
Identity = 101/126 (80.16%), Postives = 115/126 (91.27%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MA+S D  LKSDALLEQMK +LTTDAGKE +KKVG VYQ+NI+PKK+G +EV+YT+DLKK
Sbjct: 1   MADS-DQQLKSDALLEQMKTHLTTDAGKETIKKVGLVYQLNIAPKKLGFNEVIYTVDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEV KG YEGGKPDAT SFKDEDF+KIA GK+NPQIAF+RGA+KIKGSI+AAQKFTPDIF
Sbjct: 61  GEVKKGAYEGGKPDATFSFKDEDFLKIATGKMNPQIAFMRGAMKIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 125

[Close]

BLAST of ClCG05G019880 vs. TAIR10
Match: AT5G42890.1 (AT5G42890.1 sterol carrier protein 2)

HSP 1 Score: 190.7 bits (483), Expect = 5.6e-49
Identity = 87/122 (71.31%), Postives = 109/122 (89.34%), Query Frame = 1


Query: 5   ADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGEVT 64
           A++ LKSDA+++ MK++L+TDAGKE+ +K+G VYQINI+PKK+G +EV Y +DLKKGEVT
Sbjct: 2   ANTQLKSDAIMDMMKEHLSTDAGKEVTEKIGLVYQINIAPKKLGFEEVTYIVDLKKGEVT 61

Query: 65  KGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFPKPA 124
           KG YEGGK DAT SFKD+DFVK+A GK+NPQ+AF+RGA+KIKGS++AAQKFTPDIFPKP+
Sbjct: 62  KGKYEGGKVDATFSFKDDDFVKVATGKMNPQMAFIRGAMKIKGSLSAAQKFTPDIFPKPS 121

Query: 125 KL 127
           KL
Sbjct: 122 KL 123

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BLAST of ClCG05G019880 vs. NCBI nr
Match: gi|659103260|ref|XP_008452546.1| (PREDICTED: non-specific lipid-transfer protein-like [Cucumis melo])

HSP 1 Score: 226.5 bits (576), Expect = 2.6e-56
Identity = 113/126 (89.68%), Postives = 121/126 (96.03%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANS++S LKSDALLEQMKQ+L+TDAGKEI KKVG+VYQ+NISPKKIGTDEVVYTIDLKK
Sbjct: 1   MANSSNSSLKSDALLEQMKQHLSTDAGKEIAKKVGYVYQLNISPKKIGTDEVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEV KGPYEGGKPDATLSFKDEDFVKIALGK+NPQIAFLRGAL+IKGSI AAQKFTP IF
Sbjct: 61  GEVIKGPYEGGKPDATLSFKDEDFVKIALGKMNPQIAFLRGALQIKGSIGAAQKFTPAIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of ClCG05G019880 vs. NCBI nr
Match: gi|449446993|ref|XP_004141254.1| (PREDICTED: non-specific lipid-transfer protein-like 1 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 110/126 (87.30%), Postives = 122/126 (96.83%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MANS++S LKSDALL+QMKQ+L+TDAGKEI KKVG+VYQ+NISPKKIGTD VVYTIDLKK
Sbjct: 1   MANSSNSSLKSDALLDQMKQHLSTDAGKEIAKKVGYVYQLNISPKKIGTDVVVYTIDLKK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEV KGPYEGGKPDATLSFKDEDF+KIALGK+NPQ+AFLRGAL+IKGSI+AAQKFTPDIF
Sbjct: 61  GEVIKGPYEGGKPDATLSFKDEDFIKIALGKMNPQMAFLRGALQIKGSISAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKPAKL
Sbjct: 121 PKPAKL 126

[Close]

BLAST of ClCG05G019880 vs. NCBI nr
Match: gi|1012198262|ref|XP_015972470.1| (PREDICTED: peroxisomal multifunctional enzyme type 2 [Arachis duranensis])

HSP 1 Score: 207.2 bits (526), Expect = 1.7e-50
Identity = 96/118 (81.36%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 9   LKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKGEVTKGPY 68
           LKSDAL++QMKQ+L+TDAGKEI+KK+G VYQI I+PKKIG +EV+YT+DLKKGEVTKGPY
Sbjct: 8   LKSDALMDQMKQHLSTDAGKEIVKKIGLVYQIQIAPKKIGYNEVIYTVDLKKGEVTKGPY 67

Query: 69  EGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFPKPAKL 127
           EGGKPDAT SFKDEDFVK+ALGK+NPQ+AF+RGA+KIKGS++AAQKFTPDIFPKPAK+
Sbjct: 68  EGGKPDATFSFKDEDFVKVALGKMNPQLAFMRGAMKIKGSLSAAQKFTPDIFPKPAKM 125

[Close]

BLAST of ClCG05G019880 vs. NCBI nr
Match: gi|702371600|ref|XP_010061751.1| (PREDICTED: non-specific lipid-transfer protein-like [Eucalyptus grandis])

HSP 1 Score: 205.3 bits (521), Expect = 6.3e-50
Identity = 95/125 (76.00%), Postives = 116/125 (92.80%), Query Frame = 1


Query: 2   ANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKKG 61
           ++S+ + LKSDAL+EQMKQ+L+TDAGK + KK+G VYQINI+PKKIG DEVVY +DLKKG
Sbjct: 3   SDSSATQLKSDALMEQMKQHLSTDAGKAVTKKIGLVYQINIAPKKIGFDEVVYIVDLKKG 62

Query: 62  EVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIFP 121
           EVTKGPYEGGKPDAT SFKD+DF+K+A GK+NPQIAF+RGA+KIKGS++AAQKFTPDIFP
Sbjct: 63  EVTKGPYEGGKPDATFSFKDDDFIKVATGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFP 122

Query: 122 KPAKL 127
           KP+K+
Sbjct: 123 KPSKM 127

[Close]

BLAST of ClCG05G019880 vs. NCBI nr
Match: gi|351725561|ref|NP_001236073.1| (uncharacterized protein LOC100500301 [Glycine max])

HSP 1 Score: 205.3 bits (521), Expect = 6.3e-50
Identity = 97/126 (76.98%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MANSADSPLKSDALLEQMKQYLTTDAGKEILKKVGHVYQINISPKKIGTDEVVYTIDLKK 60
           MA+S+ S LKSDA++EQMKQ+L TD+GK++ KK+G VYQI I+PKK+G DEVVYT+DL+K
Sbjct: 1   MADSS-SNLKSDAIMEQMKQHLATDSGKQVTKKIGLVYQIQIAPKKLGIDEVVYTVDLRK 60

Query: 61  GEVTKGPYEGGKPDATLSFKDEDFVKIALGKLNPQIAFLRGALKIKGSIAAAQKFTPDIF 120
           GEVTKGPYEGGKPDA+ SFKDEDFVK+ALGK+NPQIAF+RGA+KIKGS++AAQKFTPDIF
Sbjct: 61  GEVTKGPYEGGKPDASFSFKDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIF 120

Query: 121 PKPAKL 127
           PKP+KL
Sbjct: 121 PKPSKL 125

The following BLAST results are available for this feature:

BLAST of ClCG05G019880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHB4_RAT	1.6e-13	46.74	Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 S...	[more]
NLTP1_CAEEL	2.3e-12	37.07	Non-specific lipid-transfer protein-like 1 OS=Caenorhabditis elegans GN=nlt-1 PE...	[more]
DHB4_HUMAN	6.8e-12	40.71	Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3	[more]
DHB4_MOUSE	2.0e-11	44.44	Peroxisomal multifunctional enzyme type 2 OS=Mus musculus GN=Hsd17b4 PE=1 SV=3	[more]
NLTP_HUMAN	1.3e-10	30.36	Non-specific lipid-transfer protein OS=Homo sapiens GN=SCP2 PE=1 SV=2	[more]

BLAST of ClCG05G019880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4V5_CUCSA	7.0e-56	87.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639790 PE=4 SV=1	[more]
C6T1B1_SOYBN	4.4e-50	76.98	Uncharacterized protein OS=Glycine max GN=GLYMA_14G082800 PE=2 SV=1	[more]
A0A0B2RV47_GLYSO	4.4e-50	76.98	Peroxisomal multifunctional enzyme type 2 OS=Glycine soja GN=glysoja_037587 PE=4...	[more]
A0A059BRL1_EUCGR	4.4e-50	76.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02346 PE=4 SV=1	[more]
A0A0K9RFC6_SPIOL	5.7e-50	80.16	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078760 PE=4 SV=1	[more]

BLAST of ClCG05G019880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42890.1	5.6e-49	71.31	sterol carrier protein 2	[more]

BLAST of ClCG05G019880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659103260\|ref\|XP_008452546.1\|	2.6e-56	89.68	PREDICTED: non-specific lipid-transfer protein-like [Cucumis melo]	[more]
gi\|449446993\|ref\|XP_004141254.1\|	1.0e-55	87.30	PREDICTED: non-specific lipid-transfer protein-like 1 [Cucumis sativus]	[more]
gi\|1012198262\|ref\|XP_015972470.1\|	1.7e-50	81.36	PREDICTED: peroxisomal multifunctional enzyme type 2 [Arachis duranensis]	[more]
gi\|702371600\|ref\|XP_010061751.1\|	6.3e-50	76.00	PREDICTED: non-specific lipid-transfer protein-like [Eucalyptus grandis]	[more]
gi\|351725561\|ref\|NP_001236073.1\|	6.3e-50	76.98	uncharacterized protein LOC100500301 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003033	SCP2_sterol-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0009686	gibberellin biosynthetic process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0032365	intracellular lipid transport
biological_process	GO:0007031	peroxisome organization
biological_process	GO:0048608	reproductive structure development
biological_process	GO:0009735	response to cytokinin
biological_process	GO:0009845	seed germination
biological_process	GO:0008150	biological_process
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033814	propanoyl-CoA C-acyltransferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G019880.1	ClCG05G019880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003033	SCP2 sterol-binding domain	GENE3D	G3DSA:3.30.1050.10		coord: 4..119 score: 1.4
IPR003033	SCP2 sterol-binding domain	PFAM	PF02036	SCP2	coord: 16..116 score: 1.8
IPR003033	SCP2 sterol-binding domain	unknown	SSF55718	SCP-like	coord: 8..123 score: 3.06
None	No IPR available	PANTHER	PTHR10094	STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN	coord: 1..126 score: 2.9
None	No IPR available	PANTHER	PTHR10094:SF17	SUBFAMILY NOT NAMED	coord: 1..126 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G019880	Csa4G639790	Cucumber (Chinese Long) v2	cuwcgB310
ClCG05G019880	MELO3C016751	Melon (DHL92) v3.5.1	mewcgB480
ClCG05G019880	Cla020674	Watermelon (97103) v1	wcgwmB285
ClCG05G019880	Cla97C05G101510	Watermelon (97103) v2	wcgwmbB229
ClCG05G019880	CSPI04G24060	Wild cucumber (PI 183967)	cpiwcgB327
ClCG05G019880	Cucsa.352160	Cucumber (Gy14) v1	cgywcgB599
ClCG05G019880	CmaCh01G018410	Cucurbita maxima (Rimu)	cmawcgB411
ClCG05G019880	CmoCh01G019000	Cucurbita moschata (Rifu)	cmowcgB412
ClCG05G019880	Lsi04G015640	Bottle gourd (USVL1VR-Ls)	lsiwcgB287
ClCG05G019880	Cp4.1LG02g06930	Cucurbita pepo (Zucchini)	cpewcgB509
ClCG05G019880	MELO3C016751.2	Melon (DHL92) v3.6.1	medwcgB474
ClCG05G019880	Carg10602	Silver-seed gourd	carwcgB0748
ClCG05G019880	CsaV3_4G034310	Cucumber (Chinese Long) v3	cucwcgB326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G019880	Cucurbita pepo (Zucchini)	cpewcgB113
ClCG05G019880	Cucurbita pepo (Zucchini)	cpewcgB700
ClCG05G019880	Bottle gourd (USVL1VR-Ls)	lsiwcgB431
ClCG05G019880	Cucumber (Gy14) v2	cgybwcgB131
ClCG05G019880	Cucumber (Gy14) v2	cgybwcgB290
ClCG05G019880	Melon (DHL92) v3.6.1	medwcgB278
ClCG05G019880	Silver-seed gourd	carwcgB0175
ClCG05G019880	Silver-seed gourd	carwcgB0809
ClCG05G019880	Cucumber (Chinese Long) v3	cucwcgB150
ClCG05G019880	Watermelon (97103) v2	wcgwmbB243
ClCG05G019880	Wax gourd	wcgwgoB452
ClCG05G019880	Wax gourd	wcgwgoB479
ClCG05G019880	Watermelon (Charleston Gray)	wcgwcgB166
ClCG05G019880	Cucumber (Gy14) v1	cgywcgB406
ClCG05G019880	Cucurbita maxima (Rimu)	cmawcgB021
ClCG05G019880	Cucurbita maxima (Rimu)	cmawcgB160
ClCG05G019880	Cucurbita maxima (Rimu)	cmawcgB702
ClCG05G019880	Cucurbita moschata (Rifu)	cmowcgB015
ClCG05G019880	Cucurbita moschata (Rifu)	cmowcgB149
ClCG05G019880	Cucurbita moschata (Rifu)	cmowcgB707
ClCG05G019880	Wild cucumber (PI 183967)	cpiwcgB144
ClCG05G019880	Cucumber (Chinese Long) v2	cuwcgB140
ClCG05G019880	Melon (DHL92) v3.5.1	mewcgB287
ClCG05G019880	Watermelon (97103) v1	wcgwmB273