ClCG05G019650 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G019650
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 31917477 .. 31917761 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTATGAAGTTGGGAAGAGGGCTTCCACCGCGCATTGGTCGTGAAATCTTGTCTAAACTTGTTATCTCCAATTTGCCCAATTTGAGACTCGTCTCTAAAACTTGGAATCATCTAGTTTTAGATTACGGTGATTCCTGTAATCATGAATTCTTTACAAATGCTTTCCTTCTCTGCACATGTGATGATATCCCCAATTGCAATCCTACTAATACATGCAATCCCAAGATGCATTGTATCAACGACCATTTGGATGTGGATTTTGATTTGGAATTGGAATGA

mRNA sequence

ATGGAGAGTATGAAGTTGGGAAGAGGGCTTCCACCGCGCATTGGTCGTGAAATCTTGTCTAAACTTGTTATCTCCAATTTGCCCAATTTGAGACTCGTCTCTAAAACTTGGAATCATCTAGTTTTAGATTACGGTGATTCCTGTAATCATGAATTCTTTACAAATGCTTTCCTTCTCTGCACATGTGATGATATCCCCAATTGCAATCCTACTAATACATGCAATCCCAAGATGCATTGTATCAACGACCATTTGGATGTGGATTTTGATTTGGAATTGGAATGA

Coding sequence (CDS)

ATGGAGAGTATGAAGTTGGGAAGAGGGCTTCCACCGCGCATTGGTCGTGAAATCTTGTCTAAACTTGTTATCTCCAATTTGCCCAATTTGAGACTCGTCTCTAAAACTTGGAATCATCTAGTTTTAGATTACGGTGATTCCTGTAATCATGAATTCTTTACAAATGCTTTCCTTCTCTGCACATGTGATGATATCCCCAATTGCAATCCTACTAATACATGCAATCCCAAGATGCATTGTATCAACGACCATTTGGATGTGGATTTTGATTTGGAATTGGAATGA

Protein sequence

MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDIPNCNPTNTCNPKMHCINDHLDVDFDLELE

Homology

[Close]

BLAST of ClCG05G019650 vs. TrEMBL
Match: A0A0A0LPC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 56/97 (57.73%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           S+  G+GLPP I + I SKLVISNLP+ R V KTWNHLVL Y  S   +F TNAFLL T 
Sbjct: 35  SIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFLLSTS 94

Query: 63  DDIPNCNPTNTCNPKMHCIN-----DHLDVDFDLELE 95
           D + N      CNPKMHCIN        DVDFDLE E
Sbjct: 95  DRMLN---YELCNPKMHCINLDNRQSSNDVDFDLEWE 128

[Close]

BLAST of ClCG05G019650 vs. TrEMBL
Match: A0A0A0LWG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-17
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           ++  G+GLPP I + I SKLVIS+LP+ RLVS TWN LVLDY  S   +F  NAFLL T 
Sbjct: 19  TINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLKNAFLLSTS 78

Query: 63  DDIPNCNPTNTCNPKMHCIN---DHLDVDFDLELE 95
           D   N      CNPKMHCIN     L  DFD +LE
Sbjct: 79  DRGLN---YKLCNPKMHCINLDTRQLSNDFDFDLE 110

[Close]

BLAST of ClCG05G019650 vs. TrEMBL
Match: A0A0A0LUP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014430 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           S+  G+GLPP I + I SKLVISNLP+ R V KTWNHLVL Y  S   +F TNAFLL T 
Sbjct: 35  SIDWGKGLPPLIAKIIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFLLSTS 94

Query: 63  DDIPNCNPTNTCNPKMHCIN-DHLDVDFDLELE 95
           D + N      CNPKMH IN D+     D++LE
Sbjct: 95  DQMLN---YELCNPKMHSINLDNTQCSDDVDLE 124

[Close]

BLAST of ClCG05G019650 vs. TrEMBL
Match: A0A0A0K9U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102760 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.0e-16
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 4  MKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTN---AFLLC 63
          M+LGRGLPP I  EIL ++VISNLPNLRL+SK WNH +L    + +H FFTN   AFLL 
Sbjct: 1  MELGRGLPPHIVGEILCRVVISNLPNLRLLSKAWNHFIL---HNAHHFFFTNANDAFLLS 60

Query: 64 TCDDIPNCNPTNTCNPKMHCI----NDHLDVDFDLE 93
          TCD  PN        PKMHCI      HL +D + E
Sbjct: 61 TCDRTPN---NKDLYPKMHCIRFDTTKHLGLDLESE 90

[Close]

BLAST of ClCG05G019650 vs. TrEMBL
Match: A0A0A0LSE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.8e-15
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 9  GLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTCDDI-PN 68
          GLP  IG+ I SKL++SNLP  R+V K WN L+LD+  S + +F TN F+L TCD + P 
Sbjct: 9  GLPSDIGKTIFSKLLVSNLPACRVVCKAWNELILDHASSAS-KFLTNDFILFTCDVLHPF 68

Query: 69 CNPTNTCNPKMHCIN-DHLDVDFDLELE 95
            P N  NP MHC+  D+LD+D DL+LE
Sbjct: 69 PCPDNHTNPNMHCLRFDNLDLDLDLDLE 95

[Close]

BLAST of ClCG05G019650 vs. NCBI nr
Match: gi|700208649|gb|KGN63745.1| (hypothetical protein Csa_1G014420 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-19
Identity = 56/97 (57.73%), Postives = 62/97 (63.92%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           S+  G+GLPP I + I SKLVISNLP+ R V KTWNHLVL Y  S   +F TNAFLL T 
Sbjct: 35  SIDWGKGLPPLIAKTIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFLLSTS 94

Query: 63  DDIPNCNPTNTCNPKMHCIN-----DHLDVDFDLELE 95
           D + N      CNPKMHCIN        DVDFDLE E
Sbjct: 95  DRMLN---YELCNPKMHCINLDNRQSSNDVDFDLEWE 128

[Close]

BLAST of ClCG05G019650 vs. NCBI nr
Match: gi|659120418|ref|XP_008460183.1| (PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-17
Identity = 57/99 (57.58%), Postives = 64/99 (64.65%), Query Frame = 1


Query: 1  MESMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFT---NAF 60
          ME+MKLGRGLP  I REIL  +VISN PNLR+VSKTWN  +LDY     HEF +   NAF
Sbjct: 1  MENMKLGRGLPHHIVREILRWVVISNFPNLRVVSKTWNLFILDYA----HEFSSTNANAF 60

Query: 61 LLCTCDDIPNCNPTNTCNPKMHCI--NDHLDVDFDLELE 95
          LL TCD  PN       N KMHCI  +    +DFDLE E
Sbjct: 61 LLSTCDRTPN---NKDLNHKMHCIRFDTTTHLDFDLESE 92

[Close]

BLAST of ClCG05G019650 vs. NCBI nr
Match: gi|778665047|ref|XP_011648473.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           ++  G+GLPP I + I SKLVIS+LP+ RLVS TWN LVLDY  S   +F  NAFLL T 
Sbjct: 19  TINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLKNAFLLSTS 78

Query: 63  DDIPNCNPTNTCNPKMHCIN---DHLDVDFDLELE 95
           D   N      CNPKMHCIN     L  DFD +LE
Sbjct: 79  DRGLN---YKLCNPKMHCINLDTRQLSNDFDFDLE 110

[Close]

BLAST of ClCG05G019650 vs. NCBI nr
Match: gi|700210076|gb|KGN65172.1| (hypothetical protein Csa_1G257290 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-16
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           ++  G+GLPP I + I SKLVIS+LP+ RLVS TWN LVLDY  S   +F  NAFLL T 
Sbjct: 19  TINCGKGLPPLIAKTIFSKLVISDLPSCRLVSNTWNDLVLDYASSTQLQFLKNAFLLSTS 78

Query: 63  DDIPNCNPTNTCNPKMHCIN---DHLDVDFDLELE 95
           D   N      CNPKMHCIN     L  DFD +LE
Sbjct: 79  DRGLN---YKLCNPKMHCINLDTRQLSNDFDFDLE 110

[Close]

BLAST of ClCG05G019650 vs. NCBI nr
Match: gi|700208650|gb|KGN63746.1| (hypothetical protein Csa_1G014430 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-16
Identity = 51/93 (54.84%), Postives = 60/93 (64.52%), Query Frame = 1


Query: 3   SMKLGRGLPPRIGREILSKLVISNLPNLRLVSKTWNHLVLDYGDSCNHEFFTNAFLLCTC 62
           S+  G+GLPP I + I SKLVISNLP+ R V KTWNHLVL Y  S   +F TNAFLL T 
Sbjct: 35  SIDWGKGLPPLIAKIIFSKLVISNLPSCRFVCKTWNHLVLHYASSTQLQFLTNAFLLSTS 94

Query: 63  DDIPNCNPTNTCNPKMHCIN-DHLDVDFDLELE 95
           D + N      CNPKMH IN D+     D++LE
Sbjct: 95  DQMLN---YELCNPKMHSINLDNTQCSDDVDLE 124

The following BLAST results are available for this feature:

BLAST of ClCG05G019650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPC6_CUCSA	3.0e-19	57.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1	[more]
A0A0A0LWG1_CUCSA	8.1e-17	54.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1	[more]
A0A0A0LUP7_CUCSA	1.1e-16	54.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014430 PE=4 SV=1	[more]
A0A0A0K9U2_CUCSA	9.0e-16	54.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102760 PE=4 SV=1	[more]
A0A0A0LSE0_CUCSA	5.8e-15	52.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G011590 PE=4 SV=1	[more]

BLAST of ClCG05G019650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700208649\|gb\|KGN63745.1\|	4.3e-19	57.73	hypothetical protein Csa_1G014420 [Cucumis sativus]	[more]
gi\|659120418\|ref\|XP_008460183.1\|	6.8e-17	57.58	PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo]	[more]
gi\|778665047\|ref\|XP_011648473.1\|	1.2e-16	54.74	PREDICTED: F-box protein At3g07870-like [Cucumis sativus]	[more]
gi\|700210076\|gb\|KGN65172.1\|	1.2e-16	54.74	hypothetical protein Csa_1G257290 [Cucumis sativus]	[more]
gi\|700208650\|gb\|KGN63746.1\|	1.5e-16	54.84	hypothetical protein Csa_1G014430 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G019650.1	ClCG05G019650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 10..43 score: 5.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 10..56 score:
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 9..83 score: 7.5
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 10..43 score: 9.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G019650	Cucumber (Chinese Long) v2	cuwcgB140
ClCG05G019650	Cucumber (Chinese Long) v2	cuwcgB310
ClCG05G019650	Melon (DHL92) v3.5.1	mewcgB287
ClCG05G019650	Melon (DHL92) v3.5.1	mewcgB480
ClCG05G019650	Watermelon (97103) v1	wcgwmB273
ClCG05G019650	Watermelon (97103) v1	wcgwmB285
ClCG05G019650	Cucurbita pepo (Zucchini)	cpewcgB509
ClCG05G019650	Cucurbita pepo (Zucchini)	cpewcgB700
ClCG05G019650	Cucurbita pepo (Zucchini)	cpewcgB738
ClCG05G019650	Bottle gourd (USVL1VR-Ls)	lsiwcgB287
ClCG05G019650	Bottle gourd (USVL1VR-Ls)	lsiwcgB431
ClCG05G019650	Cucumber (Gy14) v2	cgybwcgB131
ClCG05G019650	Cucumber (Gy14) v2	cgybwcgB290
ClCG05G019650	Melon (DHL92) v3.6.1	medwcgB278
ClCG05G019650	Melon (DHL92) v3.6.1	medwcgB474
ClCG05G019650	Silver-seed gourd	carwcgB0104
ClCG05G019650	Silver-seed gourd	carwcgB0748
ClCG05G019650	Cucumber (Chinese Long) v3	cucwcgB150
ClCG05G019650	Cucumber (Chinese Long) v3	cucwcgB326
ClCG05G019650	Watermelon (97103) v2	wcgwmbB229
ClCG05G019650	Watermelon (97103) v2	wcgwmbB243
ClCG05G019650	Wax gourd	wcgwgoB452
ClCG05G019650	Wax gourd	wcgwgoB479
ClCG05G019650	Watermelon (Charleston Gray)	wcgwcgB166
ClCG05G019650	Cucumber (Gy14) v1	cgywcgB194
ClCG05G019650	Cucumber (Gy14) v1	cgywcgB406
ClCG05G019650	Cucurbita maxima (Rimu)	cmawcgB021
ClCG05G019650	Cucurbita maxima (Rimu)	cmawcgB160
ClCG05G019650	Cucurbita maxima (Rimu)	cmawcgB411
ClCG05G019650	Cucurbita moschata (Rifu)	cmowcgB015
ClCG05G019650	Cucurbita moschata (Rifu)	cmowcgB149
ClCG05G019650	Cucurbita moschata (Rifu)	cmowcgB412
ClCG05G019650	Wild cucumber (PI 183967)	cpiwcgB144
ClCG05G019650	Wild cucumber (PI 183967)	cpiwcgB327