ClCG05G019640 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G019640
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 31917089 .. 31917412 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCCTTGTTATTTGTAAATGTTGATGCCATATTCAATCCTATGACTAATGAGTTCGTCCAAGTTCCTCGACATGAGTTAGATGGTGATATTCACTACTTTGGATTTGGTTTAACCACTACAAGGAGGAATTACAAATTGTTTAGAGTTAGTCTCTCTGATTCTGAATCTAGCTCCATGATGGATGTTTTGACGTTTAGTAAGAGTGGAACCAATCCTAACCATGATCAGTGGAGGCATCTTCAATTCATGAATATCGGTGCTTACTTGAATGGAGTTATCTATTGGATAGGAAAAGAGAAATATAAAGAAAATGAGTAG

mRNA sequence

ATGGTCTCCTTGTTATTTGTAAATGTTGATGCCATATTCAATCCTATGACTAATGAGTTCGTCCAAGTTCCTCGACATGAGTTAGATGGTGATATTCACTACTTTGGATTTGGTTTAACCACTACAAGGAGGAATTACAAATTGTTTAGAGTTAGTCTCTCTGATTCTGAATCTAGCTCCATGATGGATGTTTTGACGTTTAGTAAGAGTGGAACCAATCCTAACCATGATCAGTGGAGGCATCTTCAATTCATGAATATCGGTGCTTACTTGAATGGAGTTATCTATTGGATAGGAAAAGAGAAATATAAAGAAAATGAGTAG

Coding sequence (CDS)

ATGGTCTCCTTGTTATTTGTAAATGTTGATGCCATATTCAATCCTATGACTAATGAGTTCGTCCAAGTTCCTCGACATGAGTTAGATGGTGATATTCACTACTTTGGATTTGGTTTAACCACTACAAGGAGGAATTACAAATTGTTTAGAGTTAGTCTCTCTGATTCTGAATCTAGCTCCATGATGGATGTTTTGACGTTTAGTAAGAGTGGAACCAATCCTAACCATGATCAGTGGAGGCATCTTCAATTCATGAATATCGGTGCTTACTTGAATGGAGTTATCTATTGGATAGGAAAAGAGAAATATAAAGAAAATGAGTAG

Protein sequence

MVSLLFVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDSESSSMMDVLTFSKSGTNPNHDQWRHLQFMNIGAYLNGVIYWIGKEKYKENE
Homology
[Close]
BLAST of ClCG05G019640 vs. TrEMBL
Match: A0A0A0LPC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.9e-18
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVS--------------LSDSE 71
           IFNPMTNEF QV   +   D +++GFGL+   + YKLFRVS                  +
Sbjct: 169 IFNPMTNEFFQVSEQDTFDDFYHYGFGLSAISKQYKLFRVSEAIPYSERFRLMITFGRDD 228

Query: 72  SSSMMDVLTFSKSGTN--PNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           +   M+VLTF +SGTN  P H+QWRHL  ++     G YLNG+IYW+GKEK K+ +
Sbjct: 229 THYTMEVLTFGRSGTNHIPIHNQWRHLHNLSCDLIHGVYLNGIIYWLGKEKGKKEK 284

[Close]
BLAST of ClCG05G019640 vs. TrEMBL
Match: A0A0A0K9U2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102760 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 10  DAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESSSMMD 69
           D IFNP+TNEF+QVPR E DGD +YFG G + T + YKLFRV+ S         +SS+MD
Sbjct: 129 DGIFNPLTNEFLQVPRGEFDGDNYYFGLGFSPTTKQYKLFRVTDSFFIDGNFDNNSSIMD 188

Query: 70  VLTFS-KSGTNPNHDQWRHLQ-----FMNIGAYLNGVIY 97
           VL FS +S TN N++QWR L        + GAYLNG+IY
Sbjct: 189 VLHFSRRSETNHNYNQWRQLHSIPPIICSHGAYLNGIIY 227

[Close]
BLAST of ClCG05G019640 vs. TrEMBL
Match: A0A0A0LWG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-16
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 1 

Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRV---------SLSDSESSSMM 71
           IFNPMTNEF+QV  H    D + +GFG +   + YKLFRV         + S  ++   M
Sbjct: 153 IFNPMTNEFLQVSEHGTFDDFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTM 212

Query: 72  DVLTFSKSGTN---PNHDQWRHL-----QFMNIGAYLNGVIYWIGKEKYKENE 108
           +VLTF +SGTN   P H+QWR L     + +  G YLNG+IYW+ KEK K+ E
Sbjct: 213 EVLTFGRSGTNHSIPIHNQWRRLHTLPFEIVADGVYLNGIIYWLVKEKGKDKE 265

[Close]
BLAST of ClCG05G019640 vs. TrEMBL
Match: A0A0A0KUJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643280 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 10  DAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLSDS-ESSSMMDVLTFS 69
           + I NPMTNEF+++P  E D    Y+GFG     + YKLFRV+  D  E  S+M+++ F 
Sbjct: 57  EGILNPMTNEFLELPDREYDESSPYYGFGFNPKTKQYKLFRVTERDRYEFYSIMEIMRF- 116

Query: 70  KSGTNPNHDQWRH-----LQFMNIGAYLNGVIYWIGKEKYK 105
               +   ++WRH     + F + GAYLNGVIYW+GKEK K
Sbjct: 117 -GDRSETKEEWRHFKCPPISFDDHGAYLNGVIYWMGKEKGK 155

[Close]
BLAST of ClCG05G019640 vs. TrEMBL
Match: A0A0A0LUP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014430 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.1e-13
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 1 

Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVS--------------LSDSE 71
           IFNPMTNEF QV   +   D + +GFGL+   + YKLFR S               S  +
Sbjct: 167 IFNPMTNEFFQVSEQDTFDDFYNYGFGLSPVTKQYKLFRTSKAIPYSKRFRLVSTCSTDD 226

Query: 72  SSSMMDVLTFSKSGTN--PNHDQWRHLQFMNI-------GAYLNGVIYWIGKEKYK 105
           +  MM+VLTF +SGTN  P H+QWRHL  ++        G YLNG+I+   K+  K
Sbjct: 227 THYMMEVLTFGRSGTNHIPIHNQWRHLHNLSYDIVVGDGGVYLNGIIFGWEKKNVK 282

[Close]
BLAST of ClCG05G019640 vs. NCBI nr
Match: gi|659120418|ref|XP_008460183.1| (PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo])

HSP 1 Score: 116.3 bits (290), Expect = 3.3e-23
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 1 

Query: 6   FVNVDAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESS 65
           F   D IFNPMTNEF Q+PR ELDGDI+ +  G + T + YKLFRV+ S         +S
Sbjct: 128 FTRCDGIFNPMTNEFFQIPRGELDGDIYSYELGFSPTTKQYKLFRVTESFFLDGDADNNS 187

Query: 66  SMMDVLTFS-KSGTNPNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           S+MDVLTF+ +S TN NH QWR L  + +    GAYLNGVIYWIG ++ KENE
Sbjct: 188 SIMDVLTFTRRSETNHNHSQWRRLHSLPLRIHNGAYLNGVIYWIGTKEDKENE 240

[Close]
BLAST of ClCG05G019640 vs. NCBI nr
Match: gi|700208649|gb|KGN63745.1| (hypothetical protein Csa_1G014420 [Cucumis sativus])

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-18
Identity = 52/116 (44.83%), Postives = 69/116 (59.48%), Query Frame = 1 

Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVS--------------LSDSE 71
           IFNPMTNEF QV   +   D +++GFGL+   + YKLFRVS                  +
Sbjct: 169 IFNPMTNEFFQVSEQDTFDDFYHYGFGLSAISKQYKLFRVSEAIPYSERFRLMITFGRDD 228

Query: 72  SSSMMDVLTFSKSGTN--PNHDQWRHLQFMNI----GAYLNGVIYWIGKEKYKENE 108
           +   M+VLTF +SGTN  P H+QWRHL  ++     G YLNG+IYW+GKEK K+ +
Sbjct: 229 THYTMEVLTFGRSGTNHIPIHNQWRHLHNLSCDLIHGVYLNGIIYWLGKEKGKKEK 284

[Close]
BLAST of ClCG05G019640 vs. NCBI nr
Match: gi|700191286|gb|KGN46490.1| (hypothetical protein Csa_6G102760 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 53/99 (53.54%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 10  DAIFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRVSLS------DSESSSMMD 69
           D IFNP+TNEF+QVPR E DGD +YFG G + T + YKLFRV+ S         +SS+MD
Sbjct: 129 DGIFNPLTNEFLQVPRGEFDGDNYYFGLGFSPTTKQYKLFRVTDSFFIDGNFDNNSSIMD 188

Query: 70  VLTFS-KSGTNPNHDQWRHLQ-----FMNIGAYLNGVIY 97
           VL FS +S TN N++QWR L        + GAYLNG+IY
Sbjct: 189 VLHFSRRSETNHNYNQWRQLHSIPPIICSHGAYLNGIIY 227

[Close]
BLAST of ClCG05G019640 vs. NCBI nr
Match: gi|700210076|gb|KGN65172.1| (hypothetical protein Csa_1G257290 [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 1 

Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRV---------SLSDSESSSMM 71
           IFNPMTNEF+QV  H    D + +GFG +   + YKLFRV         + S  ++   M
Sbjct: 153 IFNPMTNEFLQVSEHGTFDDFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTM 212

Query: 72  DVLTFSKSGTN---PNHDQWRHL-----QFMNIGAYLNGVIYWIGKEKYKENE 108
           +VLTF +SGTN   P H+QWR L     + +  G YLNG+IYW+ KEK K+ E
Sbjct: 213 EVLTFGRSGTNHSIPIHNQWRRLHTLPFEIVADGVYLNGIIYWLVKEKGKDKE 265

[Close]
BLAST of ClCG05G019640 vs. NCBI nr
Match: gi|778665047|ref|XP_011648473.1| (PREDICTED: F-box protein At3g07870-like [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-15
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 1 

Query: 12  IFNPMTNEFVQVPRHELDGDIHYFGFGLTTTRRNYKLFRV---------SLSDSESSSMM 71
           IFNPMTNEF+QV  H    D + +GFG +   + YKLFRV         + S  ++   M
Sbjct: 153 IFNPMTNEFLQVSEHGTFDDFYLYGFGFSPITKQYKLFRVFDKGFRCRRTSSTVDTHYTM 212

Query: 72  DVLTFSKSGTN---PNHDQWRHL-----QFMNIGAYLNGVIYWIGKEK 103
           +VLTF +SGTN   P H+QWR L     + +  G YLNG+IYW+ KEK
Sbjct: 213 EVLTFGRSGTNHSIPIHNQWRRLHTLPFEIVADGVYLNGIIYWLVKEK 260

The following BLAST results are available for this feature:
BLAST of ClCG05G019640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPC6_CUCSA4.9e-1844.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014420 PE=4 SV=1[more]
A0A0A0K9U2_CUCSA2.4e-1753.54Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102760 PE=4 SV=1[more]
A0A0A0LWG1_CUCSA2.1e-1645.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257290 PE=4 SV=1[more]
A0A0A0KUJ1_CUCSA2.5e-1444.55Uncharacterized protein OS=Cucumis sativus GN=Csa_5G643280 PE=4 SV=1[more]
A0A0A0LUP7_CUCSA2.1e-1341.38Uncharacterized protein OS=Cucumis sativus GN=Csa_1G014430 PE=4 SV=1[more]
BLAST of ClCG05G019640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659120418|ref|XP_008460183.1|3.3e-2354.87PREDICTED: uncharacterized protein LOC103499068 [Cucumis melo][more]
gi|700208649|gb|KGN63745.1|7.0e-1844.83hypothetical protein Csa_1G014420 [Cucumis sativus][more]
gi|700191286|gb|KGN46490.1|3.5e-1753.54hypothetical protein Csa_6G102760 [Cucumis sativus][more]
gi|700210076|gb|KGN65172.1|3.0e-1645.13hypothetical protein Csa_1G257290 [Cucumis sativus][more]
gi|778665047|ref|XP_011648473.1|3.3e-1545.37PREDICTED: F-box protein At3g07870-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G019640.1ClCG05G019640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G019640Cucumber (Gy14) v1cgywcgB194
ClCG05G019640Cucumber (Gy14) v1cgywcgB406
ClCG05G019640Cucurbita maxima (Rimu)cmawcgB021
ClCG05G019640Cucurbita maxima (Rimu)cmawcgB160
ClCG05G019640Cucurbita maxima (Rimu)cmawcgB411
ClCG05G019640Cucurbita moschata (Rifu)cmowcgB015
ClCG05G019640Cucurbita moschata (Rifu)cmowcgB149
ClCG05G019640Cucurbita moschata (Rifu)cmowcgB412
ClCG05G019640Wild cucumber (PI 183967)cpiwcgB144
ClCG05G019640Wild cucumber (PI 183967)cpiwcgB327
ClCG05G019640Cucumber (Chinese Long) v2cuwcgB140
ClCG05G019640Cucumber (Chinese Long) v2cuwcgB310
ClCG05G019640Melon (DHL92) v3.5.1mewcgB287
ClCG05G019640Melon (DHL92) v3.5.1mewcgB480
ClCG05G019640Watermelon (97103) v1wcgwmB273
ClCG05G019640Watermelon (97103) v1wcgwmB285
ClCG05G019640Cucurbita pepo (Zucchini)cpewcgB509
ClCG05G019640Cucurbita pepo (Zucchini)cpewcgB700
ClCG05G019640Cucurbita pepo (Zucchini)cpewcgB738
ClCG05G019640Bottle gourd (USVL1VR-Ls)lsiwcgB287
ClCG05G019640Bottle gourd (USVL1VR-Ls)lsiwcgB431
ClCG05G019640Cucumber (Gy14) v2cgybwcgB131
ClCG05G019640Cucumber (Gy14) v2cgybwcgB290
ClCG05G019640Melon (DHL92) v3.6.1medwcgB278
ClCG05G019640Melon (DHL92) v3.6.1medwcgB474
ClCG05G019640Silver-seed gourdcarwcgB0104
ClCG05G019640Silver-seed gourdcarwcgB0748
ClCG05G019640Cucumber (Chinese Long) v3cucwcgB150
ClCG05G019640Cucumber (Chinese Long) v3cucwcgB326
ClCG05G019640Watermelon (97103) v2wcgwmbB229
ClCG05G019640Watermelon (97103) v2wcgwmbB243
ClCG05G019640Wax gourdwcgwgoB452
ClCG05G019640Wax gourdwcgwgoB479
ClCG05G019640Watermelon (Charleston Gray)wcgwcgB166