ClCG05G018870 (gene) Watermelon (Charleston Gray)

NameClCG05G018870
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionMannose-binding lectin superfamily protein LENGTH=444
LocationCG_Chr05 : 31158826 .. 31159080 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGGAATTGAAGGAAAAGGGGAAACGCTGTCGTTTAAAGCGAAAGGAAGCAGTGGTGGGGATGATTGGGACGACGGAGTTTATTGCAACGTAAAATTGATAGAAATCTGCTTTGGAGGAAGGTGTATCGATGCCATTCGATTCGAATATGAACACAAAGATGGCAACCAAATTAAGCCTCGAAAACATGGCGGAAATGAAGGCAAACAAATCATTCAGGTAATTTAAATTTAGTCAAGTATCCACAATTAG

mRNA sequence

ATGGGGGGAATTGAAGGAAAAGGGGAAACGCTGTCGTTTAAAGCGAAAGGAAGCAGTGGTGGGGATGATTGGGACGACGGAGTTTATTGCAACGTAAAATTGATAGAAATCTGCTTTGGAGGAAGGTGTATCGATGCCATTCGATTCGAATATGAACACAAAGATGGCAACCAAATTAAGCCTCGAAAACATGGCGGAAATGAAGGCAAACAAATCATTCAGTCAAGTATCCACAATTAG

Coding sequence (CDS)

ATGGGGGGAATTGAAGGAAAAGGGGAAACGCTGTCGTTTAAAGCGAAAGGAAGCAGTGGTGGGGATGATTGGGACGACGGAGTTTATTGCAACGTAAAATTGATAGAAATCTGCTTTGGAGGAAGGTGTATCGATGCCATTCGATTCGAATATGAACACAAAGATGGCAACCAAATTAAGCCTCGAAAACATGGCGGAAATGAAGGCAAACAAATCATTCAGTCAAGTATCCACAATTAG

Protein sequence

MGGIEGKGETLSFKAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHKDGNQIKPRKHGGNEGKQIIQSSIHN
BLAST of ClCG05G018870 vs. Swiss-Prot
Match: LECA_CASCR (Agglutinin OS=Castanea crenata PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-06
Identity = 23/56 (41.07%), Postives = 30/56 (53.57%), Query Frame = 1

Query: 17  GSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHKDGNQIKPRKHGGNEGKQI 73
           G  GG +WDDGV+  ++ + +  G   I AIR  Y+ KDG  +   KHGG  G+ I
Sbjct: 170 GGHGGMEWDDGVFPAIRELHLYVGDSVIHAIRVSYQSKDGEPLLSPKHGGEGGEPI 225

BLAST of ClCG05G018870 vs. TrEMBL
Match: A0A0A0LG45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857590 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-25
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1

Query: 1  MGGI------EGKGETLSFKAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHK 60
          MGGI      EG  +TLSFK KGSSGG+DWDDGVYC++K++EI FGGRCIDAIRF+YE K
Sbjct: 1  MGGIKEAKKEEGCAKTLSFKPKGSSGGNDWDDGVYCDIKMLEIQFGGRCIDAIRFQYEDK 60

Query: 61 DGNQIKPRKHGGNEGKQIIQSSIH 79
           GN I P+KHGGNEGK+IIQ  ++
Sbjct: 61 YGNSITPQKHGGNEGKRIIQIGLN 84

BLAST of ClCG05G018870 vs. TAIR10
Match: AT5G35940.1 (AT5G35940.1 Mannose-binding lectin superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 22/56 (39.29%), Postives = 29/56 (51.79%), Query Frame = 1

Query: 10  TLSFKAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHKDGNQIKPRKHG 66
           T   + +G  GGD WDDG + NVK + I  G   I A++FEYE+     +   +HG
Sbjct: 297 TQKLEGQGGDGGDSWDDGAFLNVKKVYIGQGSNGIVAVKFEYENDASEVVVGDEHG 352


HSP 2 Score: 36.2 bits (82), Expect = 1.1e-02
Identity = 23/56 (41.07%), Postives = 26/56 (46.43%), Query Frame = 1

Query: 11 LSFKAKGSSGGDDWDDGV-YCNVKLIEICFGGRCIDAIRFEYEHKDGNQIKPRKHG 66
          L   AKG +GG +WDDG  Y  V  I +  G   I  I+F+Y  K G  I    HG
Sbjct: 3  LMVNAKGGNGGKEWDDGFDYEGVTKIHVRAGSEGIQFIKFDYV-KVGKTIDGPIHG 57

BLAST of ClCG05G018870 vs. TAIR10
Match: AT1G52100.1 (AT1G52100.1 Mannose-binding lectin superfamily protein)

HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06
Identity = 22/52 (42.31%), Postives = 27/52 (51.92%), Query Frame = 1

Query: 14  KAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHKDGNQIKPRKHG 66
           + +G  GGD WDDG + NVK I +  G   I A++FEYE      I   +HG
Sbjct: 302 QGQGGDGGDSWDDGAFKNVKKIYVGQGDVGIAAVKFEYETYTSEVILAERHG 353

BLAST of ClCG05G018870 vs. NCBI nr
Match: gi|778689004|ref|XP_011652882.1| (PREDICTED: uncharacterized protein LOC101222978 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 7.5e-25
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1

Query: 1   MGGI------EGKGETLSFKAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHK 60
           MGGI      EG  +TLSFK KGSSGG+DWDDGVYC++K++EI FGGRCIDAIRF+YE K
Sbjct: 900 MGGIKEAKKEEGCAKTLSFKPKGSSGGNDWDDGVYCDIKMLEIQFGGRCIDAIRFQYEDK 959

Query: 61  DGNQIKPRKHGGNEGKQIIQSSIH 79
            GN I P+KHGGNEGK+IIQ  ++
Sbjct: 960 YGNSITPQKHGGNEGKRIIQIGLN 983

BLAST of ClCG05G018870 vs. NCBI nr
Match: gi|700204836|gb|KGN59969.1| (hypothetical protein Csa_3G857590 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 7.5e-25
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1

Query: 1  MGGI------EGKGETLSFKAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHK 60
          MGGI      EG  +TLSFK KGSSGG+DWDDGVYC++K++EI FGGRCIDAIRF+YE K
Sbjct: 1  MGGIKEAKKEEGCAKTLSFKPKGSSGGNDWDDGVYCDIKMLEIQFGGRCIDAIRFQYEDK 60

Query: 61 DGNQIKPRKHGGNEGKQIIQSSIH 79
           GN I P+KHGGNEGK+IIQ  ++
Sbjct: 61 YGNSITPQKHGGNEGKRIIQIGLN 84

BLAST of ClCG05G018870 vs. NCBI nr
Match: gi|659133098|ref|XP_008466552.1| (PREDICTED: agglutinin-like [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 1

Query: 1  MGGI------EGKGETLSFKAKGSS-GGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEH 60
          MGGI      EG  +TLSFK KGSS GG DWDDGVYCN+K +EI FGGRCIDAIRF+YE 
Sbjct: 1  MGGIKEAKKGEGCVKTLSFKPKGSSSGGSDWDDGVYCNIKTLEIQFGGRCIDAIRFQYED 60

Query: 61 KDGNQIKPRKHGGNEGKQIIQ 75
          K GN + P+KHGGNEGK+IIQ
Sbjct: 61 KYGNSVTPQKHGGNEGKRIIQ 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
LECA_CASCR4.6e-0641.07Agglutinin OS=Castanea crenata PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LG45_CUCSA5.2e-2567.86Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857590 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G35940.11.3e-0639.29 Mannose-binding lectin superfamily protein[more]
AT1G52100.16.3e-0642.31 Mannose-binding lectin superfamily protein[more]
Match NameE-valueIdentityDescription
gi|778689004|ref|XP_011652882.1|7.5e-2567.86PREDICTED: uncharacterized protein LOC101222978 [Cucumis sativus][more]
gi|700204836|gb|KGN59969.1|7.5e-2567.86hypothetical protein Csa_3G857590 [Cucumis sativus][more]
gi|659133098|ref|XP_008466552.1|5.4e-2370.37PREDICTED: agglutinin-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001229Jacalin-like_lectin_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019762 glucosinolate catabolic process
biological_process GO:0080028 nitrile biosynthetic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0030246 carbohydrate binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G018870.1ClCG05G018870.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001229Jacalin-like lectin domainGENE3DG3DSA:2.100.10.30coord: 13..70
score: 9.8
IPR001229Jacalin-like lectin domainPFAMPF01419Jacalincoord: 21..68
score: 9.
IPR001229Jacalin-like lectin domainPROFILEPS51752JACALIN_LECTINcoord: 10..79
score: 15
IPR001229Jacalin-like lectin domainunknownSSF51101Mannose-binding lectinscoord: 13..70
score: 8.77

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G018870Cucumber (Chinese Long) v3cucwcgB150
ClCG05G018870Cucumber (Chinese Long) v3cucwcgB239
ClCG05G018870Cucumber (Chinese Long) v3cucwcgB493
ClCG05G018870Watermelon (97103) v2wcgwmbB215
ClCG05G018870Watermelon (97103) v2wcgwmbB243
ClCG05G018870Wax gourdwcgwgoB463
ClCG05G018870Wax gourdwcgwgoB459
ClCG05G018870Wax gourdwcgwgoB482
ClCG05G018870Watermelon (Charleston Gray)wcgwcgB068
ClCG05G018870Watermelon (Charleston Gray)wcgwcgB100
ClCG05G018870Watermelon (Charleston Gray)wcgwcgB165
ClCG05G018870Watermelon (Charleston Gray)wcgwcgB166
ClCG05G018870Cucumber (Gy14) v1cgywcgB207
ClCG05G018870Cucumber (Gy14) v1cgywcgB406
ClCG05G018870Cucurbita maxima (Rimu)cmawcgB021
ClCG05G018870Cucurbita maxima (Rimu)cmawcgB160
ClCG05G018870Cucurbita maxima (Rimu)cmawcgB411
ClCG05G018870Cucurbita maxima (Rimu)cmawcgB596
ClCG05G018870Cucurbita maxima (Rimu)cmawcgB703
ClCG05G018870Cucurbita maxima (Rimu)cmawcgB772
ClCG05G018870Cucurbita moschata (Rifu)cmowcgB015
ClCG05G018870Cucurbita moschata (Rifu)cmowcgB149
ClCG05G018870Cucurbita moschata (Rifu)cmowcgB412
ClCG05G018870Cucurbita moschata (Rifu)cmowcgB596
ClCG05G018870Cucurbita moschata (Rifu)cmowcgB706
ClCG05G018870Cucurbita moschata (Rifu)cmowcgB773
ClCG05G018870Wild cucumber (PI 183967)cpiwcgB144
ClCG05G018870Wild cucumber (PI 183967)cpiwcgB498
ClCG05G018870Cucumber (Chinese Long) v2cuwcgB140
ClCG05G018870Cucumber (Chinese Long) v2cuwcgB146
ClCG05G018870Cucumber (Chinese Long) v2cuwcgB473
ClCG05G018870Melon (DHL92) v3.5.1mewcgB287
ClCG05G018870Melon (DHL92) v3.5.1mewcgB541
ClCG05G018870Watermelon (97103) v1wcgwmB273
ClCG05G018870Watermelon (97103) v1wcgwmB284
ClCG05G018870Watermelon (97103) v1wcgwmB300
ClCG05G018870Watermelon (97103) v1wcgwmB307
ClCG05G018870Cucurbita pepo (Zucchini)cpewcgB085
ClCG05G018870Cucurbita pepo (Zucchini)cpewcgB114
ClCG05G018870Cucurbita pepo (Zucchini)cpewcgB444
ClCG05G018870Cucurbita pepo (Zucchini)cpewcgB509
ClCG05G018870Cucurbita pepo (Zucchini)cpewcgB700
ClCG05G018870Cucurbita pepo (Zucchini)cpewcgB738
ClCG05G018870Bottle gourd (USVL1VR-Ls)lsiwcgB146
ClCG05G018870Bottle gourd (USVL1VR-Ls)lsiwcgB402
ClCG05G018870Bottle gourd (USVL1VR-Ls)lsiwcgB431
ClCG05G018870Cucumber (Gy14) v2cgybwcgB131
ClCG05G018870Cucumber (Gy14) v2cgybwcgB215
ClCG05G018870Cucumber (Gy14) v2cgybwcgB435
ClCG05G018870Melon (DHL92) v3.6.1medwcgB278
ClCG05G018870Melon (DHL92) v3.6.1medwcgB538
ClCG05G018870Silver-seed gourdcarwcgB0104
ClCG05G018870Silver-seed gourdcarwcgB0176
ClCG05G018870Silver-seed gourdcarwcgB0398
ClCG05G018870Silver-seed gourdcarwcgB0733
ClCG05G018870Silver-seed gourdcarwcgB0920
ClCG05G018870Silver-seed gourdcarwcgB0954