ClCG05G018870 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGGGAATTGAAGGAAAAGGGGAAACGCTGTCGTTTAAAGCGAAAGGAAGCAGTGGTGGGGATGATTGGGACGACGGAGTTTATTGCAACGTAAAATTGATAGAAATCTGCTTTGGAGGAAGGTGTATCGATGCCATTCGATTCGAATATGAACACAAAGATGGCAACCAAATTAAGCCTCGAAAACATGGCGGAAATGAAGGCAAACAAATCATTCAGGTAATTTAAATTTAGTCAAGTATCCACAATTAG ATGGGGGGAATTGAAGGAAAAGGGGAAACGCTGTCGTTTAAAGCGAAAGGAAGCAGTGGTGGGGATGATTGGGACGACGGAGTTTATTGCAACGTAAAATTGATAGAAATCTGCTTTGGAGGAAGGTGTATCGATGCCATTCGATTCGAATATGAACACAAAGATGGCAACCAAATTAAGCCTCGAAAACATGGCGGAAATGAAGGCAAACAAATCATTCAGTCAAGTATCCACAATTAG ATGGGGGGAATTGAAGGAAAAGGGGAAACGCTGTCGTTTAAAGCGAAAGGAAGCAGTGGTGGGGATGATTGGGACGACGGAGTTTATTGCAACGTAAAATTGATAGAAATCTGCTTTGGAGGAAGGTGTATCGATGCCATTCGATTCGAATATGAACACAAAGATGGCAACCAAATTAAGCCTCGAAAACATGGCGGAAATGAAGGCAAACAAATCATTCAGTCAAGTATCCACAATTAG MGGIEGKGETLSFKAKGSSGGDDWDDGVYCNVKLIEICFGGRCIDAIRFEYEHKDGNQIKPRKHGGNEGKQIIQSSIHN
BLAST of ClCG05G018870 vs. Swiss-Prot
Match: LECA_CASCR (Agglutinin OS=Castanea crenata PE=1 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 4.6e-06 Identity = 23/56 (41.07%), Postives = 30/56 (53.57%), Query Frame = 1
BLAST of ClCG05G018870 vs. TrEMBL
Match: A0A0A0LG45_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G857590 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 5.2e-25 Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
BLAST of ClCG05G018870 vs. TAIR10
Match: AT5G35940.1 (AT5G35940.1 Mannose-binding lectin superfamily protein) HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06 Identity = 22/56 (39.29%), Postives = 29/56 (51.79%), Query Frame = 1
HSP 2 Score: 36.2 bits (82), Expect = 1.1e-02 Identity = 23/56 (41.07%), Postives = 26/56 (46.43%), Query Frame = 1
BLAST of ClCG05G018870 vs. TAIR10
Match: AT1G52100.1 (AT1G52100.1 Mannose-binding lectin superfamily protein) HSP 1 Score: 47.0 bits (110), Expect = 6.3e-06 Identity = 22/52 (42.31%), Postives = 27/52 (51.92%), Query Frame = 1
BLAST of ClCG05G018870 vs. NCBI nr
Match: gi|778689004|ref|XP_011652882.1| (PREDICTED: uncharacterized protein LOC101222978 [Cucumis sativus]) HSP 1 Score: 121.3 bits (303), Expect = 7.5e-25 Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
BLAST of ClCG05G018870 vs. NCBI nr
Match: gi|700204836|gb|KGN59969.1| (hypothetical protein Csa_3G857590 [Cucumis sativus]) HSP 1 Score: 121.3 bits (303), Expect = 7.5e-25 Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 1
BLAST of ClCG05G018870 vs. NCBI nr
Match: gi|659133098|ref|XP_008466552.1| (PREDICTED: agglutinin-like [Cucumis melo]) HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23 Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |