ClCG05G017940 (gene) Watermelon (Charleston Gray)

NameClCG05G017940
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 30281658 .. 30281891 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCGAGGAGCTTCTTCATGACGTGGCACATGCAGCAGGAAGTACGGCTGAAGATGATGACTGGGTGTTCGGAGATGAGGCGGCGGATTCGGGTCTCGGCGGACTCGGCGACGTCGATGGAGAGAGAGGCGGCAGAGGGAGTGGAGGGCGGCGGAGATAGGTCGAGGTGGAGGAGGTCGTTGGAGCAGCGTCTTAGGCCTTGCATCGCCGGAGGGATTTTAAGAGAATAA

mRNA sequence

ATGGTGGCGAGGAGCTTCTTCATGACGTGGCACATGCAGCAGGAAGTACGGCTGAAGATGATGACTGGGTGTTCGGAGATGAGGCGGCGGATTCGGGTCTCGGCGGACTCGGCGACGTCGATGGAGAGAGAGGCGGCAGAGGGAGTGGAGGGCGGCGGAGATAGGTCGAGGTGGAGGAGGTCGTTGGAGCAGCGTCTTAGGCCTTGCATCGCCGGAGGGATTTTAAGAGAATAA

Coding sequence (CDS)

ATGGTGGCGAGGAGCTTCTTCATGACGTGGCACATGCAGCAGGAAGTACGGCTGAAGATGATGACTGGGTGTTCGGAGATGAGGCGGCGGATTCGGGTCTCGGCGGACTCGGCGACGTCGATGGAGAGAGAGGCGGCAGAGGGAGTGGAGGGCGGCGGAGATAGGTCGAGGTGGAGGAGGTCGTTGGAGCAGCGTCTTAGGCCTTGCATCGCCGGAGGGATTTTAAGAGAATAA

Protein sequence

MVARSFFMTWHMQQEVRLKMMTGCSEMRRRIRVSADSATSMEREAAEGVEGGGDRSRWRRSLEQRLRPCIAGGILRE
BLAST of ClCG05G017940 vs. TrEMBL
Match: A0A151TYW8_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_004803 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 8.7e-17
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1  MVARSFFMTWHMQQEVRLKMMTGCSEMRRRIRVSADSATSMEREAAE---GVEGGGDRSR 60
          MVARSFFMTWHMQQE R+KMMTGCS+MRR +R S DS+TSMERE  E     E   +RS 
Sbjct: 8  MVARSFFMTWHMQQEERVKMMTGCSDMRRVMRASVDSSTSMEREEEEEEVEEELVVERSS 67

Query: 61 WRRSLEQRLRPCI 71
          W  S EQR RPCI
Sbjct: 68 WTTSFEQRCRPCI 80

BLAST of ClCG05G017940 vs. NCBI nr
Match: gi|1012361032|gb|KYP72215.1| (hypothetical protein KK1_004803 [Cajanus cajan])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 49/73 (67.12%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1  MVARSFFMTWHMQQEVRLKMMTGCSEMRRRIRVSADSATSMEREAAE---GVEGGGDRSR 60
          MVARSFFMTWHMQQE R+KMMTGCS+MRR +R S DS+TSMERE  E     E   +RS 
Sbjct: 8  MVARSFFMTWHMQQEERVKMMTGCSDMRRVMRASVDSSTSMEREEEEEEVEEELVVERSS 67

Query: 61 WRRSLEQRLRPCI 71
          W  S EQR RPCI
Sbjct: 68 WTTSFEQRCRPCI 80

BLAST of ClCG05G017940 vs. NCBI nr
Match: gi|296081645|emb|CBI20650.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 40/73 (54.79%), Postives = 45/73 (61.64%), Query Frame = 1

Query: 1   MVARSFFMTWHMQQEVRLKMMTGCSEMRRRIRVSADSATSM-EREAAEGVEGGGDRSRWR 60
           MV    FMTWHMQQE RLKMMTG SEMRR I +S DS TSM   E   GV     R+   
Sbjct: 71  MVESRRFMTWHMQQEGRLKMMTGFSEMRRWILISVDSVTSMASGEVVVGV--SSRRTPPS 130

Query: 61  RSLEQRLRPCIAG 73
            ++ +R  PCIAG
Sbjct: 131 VNVRKRRTPCIAG 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A151TYW8_CAJCA8.7e-1767.12Uncharacterized protein OS=Cajanus cajan GN=KK1_004803 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|1012361032|gb|KYP72215.1|1.2e-1667.12hypothetical protein KK1_004803 [Cajanus cajan][more]
gi|296081645|emb|CBI20650.3|6.2e-0854.79unnamed protein product [Vitis vinifera][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G017940.1ClCG05G017940.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G017940CsGy4G023690Cucumber (Gy14) v2cgybwcgB291
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G017940Watermelon (97103) v2wcgwmbB229
ClCG05G017940Watermelon (97103) v2wcgwmbB245
ClCG05G017940Watermelon (97103) v2wcgwmbB251
ClCG05G017940Wax gourdwcgwgoB454
ClCG05G017940Wax gourdwcgwgoB481
ClCG05G017940Wax gourdwcgwgoB486
ClCG05G017940Watermelon (Charleston Gray)wcgwcgB022
ClCG05G017940Watermelon (Charleston Gray)wcgwcgB143
ClCG05G017940Watermelon (Charleston Gray)wcgwcgB168
ClCG05G017940Cucumber (Gy14) v1cgywcgB515
ClCG05G017940Cucumber (Gy14) v1cgywcgB612
ClCG05G017940Cucumber (Gy14) v1cgywcgB673
ClCG05G017940Cucurbita maxima (Rimu)cmawcgB023
ClCG05G017940Cucurbita maxima (Rimu)cmawcgB067
ClCG05G017940Cucurbita maxima (Rimu)cmawcgB413
ClCG05G017940Cucurbita maxima (Rimu)cmawcgB704
ClCG05G017940Cucurbita moschata (Rifu)cmowcgB017
ClCG05G017940Cucurbita moschata (Rifu)cmowcgB060
ClCG05G017940Cucurbita moschata (Rifu)cmowcgB110
ClCG05G017940Cucurbita moschata (Rifu)cmowcgB408
ClCG05G017940Cucurbita moschata (Rifu)cmowcgB708
ClCG05G017940Wild cucumber (PI 183967)cpiwcgB064
ClCG05G017940Wild cucumber (PI 183967)cpiwcgB147
ClCG05G017940Wild cucumber (PI 183967)cpiwcgB328
ClCG05G017940Wild cucumber (PI 183967)cpiwcgB589
ClCG05G017940Cucumber (Chinese Long) v2cuwcgB060
ClCG05G017940Cucumber (Chinese Long) v2cuwcgB143
ClCG05G017940Cucumber (Chinese Long) v2cuwcgB311
ClCG05G017940Cucumber (Chinese Long) v2cuwcgB558
ClCG05G017940Melon (DHL92) v3.5.1mewcgB213
ClCG05G017940Melon (DHL92) v3.5.1mewcgB251
ClCG05G017940Melon (DHL92) v3.5.1mewcgB481
ClCG05G017940Watermelon (97103) v1wcgwmB270
ClCG05G017940Watermelon (97103) v1wcgwmB275
ClCG05G017940Watermelon (97103) v1wcgwmB285
ClCG05G017940Cucurbita pepo (Zucchini)cpewcgB115
ClCG05G017940Cucurbita pepo (Zucchini)cpewcgB511
ClCG05G017940Cucurbita pepo (Zucchini)cpewcgB615
ClCG05G017940Cucurbita pepo (Zucchini)cpewcgB702
ClCG05G017940Bottle gourd (USVL1VR-Ls)lsiwcgB289
ClCG05G017940Cucumber (Gy14) v2cgybwcgB057
ClCG05G017940Cucumber (Gy14) v2cgybwcgB134
ClCG05G017940Cucumber (Gy14) v2cgybwcgB520
ClCG05G017940Melon (DHL92) v3.6.1medwcgB205
ClCG05G017940Melon (DHL92) v3.6.1medwcgB243
ClCG05G017940Melon (DHL92) v3.6.1medwcgB475
ClCG05G017940Silver-seed gourdcarwcgB0095
ClCG05G017940Silver-seed gourdcarwcgB0313
ClCG05G017940Silver-seed gourdcarwcgB0750
ClCG05G017940Cucumber (Chinese Long) v3cucwcgB068
ClCG05G017940Cucumber (Chinese Long) v3cucwcgB153
ClCG05G017940Cucumber (Chinese Long) v3cucwcgB327
ClCG05G017940Cucumber (Chinese Long) v3cucwcgB588