ClCG05G015920 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G015920
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	CG_Chr05 : 27901727 .. 27903495 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGACGCCTCGATCTACACTCAAATTGCTGACTCATCTAAGGAGTCGGCTACACTTGAAAGCAAAGGAGGAATAAGCAAAGTGCTCAACACCTACCAAGTCAAATCTAGGTTATCCCCAGTCGGAACTTCATCCTTCGTAAACTTACTAACCAGGTGACTACCATCAAATTAGATCGAACTAACTTCCTTCTTTGGCAGAGTATTGTGATTCCCATATTAAAAAGCTATAAGCGTGAAGGACATATGTCTGGAAAAACCCCTACTCTTGAAATGTCGATCATTCTTTCTCCATCTAACGATGAACTTGAAGGACTATTAATGCCAAATCCAAAGTATGATATCTGGATAGCAGCTGACCAATTATTGGTAGGCAGGCTTTACAGCTCCATGACCCTGAGGTGGTTGTTTAAGTGATGGGGTATGATGAAGCAAAACCATTATGTGATGCAGTCCAAGAGTACTATGGAGTTCAATCAAGATCCAAGAAGATTTAATCGTCTGATGCTGCAACAGACAAGAAAGGGAATAATGAGAATGCACGAGTATCTTGACATTATGAAAAGGTATATCGACAACCTTGCTATTGTTGGTTCTCCCATGGATATGAGGAGTTTTGTCTCTCATGTTACAACCGGTTTGGATGAGGAAGATAATGTTGTGGTGTGTGTTATGAGAAGCAAAGATCTGACTTTGAGTCAAATTCAACTGGAATTGATTGCTTTTAAGCAACGTCATGAACAACTTGAAAAGTTCAAGAATGTTGTGTCTATGAATCAAGTGTCTACAAACCGTGCAAAGCCTGAAAATCCACCAACAAACAACCATCAAAGCATTCCTCATTCAAATCAGAATAATAGAGGCTTTTATCCTTCGAAAAGAGGAGGTCACGGCAGAGGAAGAAGTAACAGGTACTCTCTTTATCCCCTGACAATCGACTCATTTGTCAAGTGTGTGGCAAAATGAGACATACTGCTACGATTTGTTTTCATAGATACGACAAACCAGAAAATACCACCTCAACCAATATGGGAAGAAACTCTATTCTACAAACCCGTTCTACAAATGAATCTCCCTCAGCTTTGATGGCTTTTCCTGAAACCCTACAAGATCCATCTTGGTATTTGGACAGGGAGCAAGCAACCATGTTACTAGTGAACTTGGAAATTTGTCTCTAAAAGGTAATCACTTATCTATAAAAAATATAGTTGTTGTTGATGGTACTAAGGTACCAACTACCACTGTTGGATCTGGTTATATTGAAACTTTGAATGGGTAGTTATTTCTTAAAGATGTGTTAGTAGTTCCTCTATTACAAAAGAAACTTCTTAGCATCTCACAATTAGTTCATAATAATCCAGTGATAGTTGAGTTTGATAACCTTTTTTGCTATGTTAAGGAAAGGAAGTCCAAGGAAGTTTGTCTGGTAGGTTGTCGTGAGCATGGGCTGTATCGGTAGATGGGAGTAAATGAAGTCTCAATTTTAGTGAATAAAGAAGCTGAAGACAGAGTCTGTATGTCAGTAACCCCTACCATGAAGATTTCAAGCAAGAATGGAAATGAAGATTTGGTTTCTTTTGTTAACTATGTATTGTTTACTTGTACTCTTGATGTTTGGCACCAAAGATTGGGTCATCCATCTCCTAGAATCGTAAATCGAATCTTACATAGTGTAATGCTTCTATCGAAAGTAATGAATGATAAGTTCTCTTTTTGTGAGGCCTGTAAATTTAGAAAACTACGCAAGTTACCTTTTACTCTTTCTGA

mRNA sequence

ATGGTTGACGCCTCGATCTACACTCAAATTGCTGACTCATCTAAGGAGTCGGCTACACTTGAAAGCAAAGGAGGAATAAGCAAAGTGCTCAACACCTACCAAGTCAAATCTAGGTTATCCCCAGTCGGAACTTCATCCTTCAGTATTGTGATTCCCATATTAAAAAGCTATAAGCGTGAAGGACATATGTCTGGAAAAACCCCTACTCTTGAAATGTCGATCATTCTTTCTCCATCTAACGATGAACTTGAAGGACTATTAATGCCAAATCCAAAGTATGATATCTGGATAGCAGCTGACCAATTATTGTCCAAGAGTACTATGGAGTTCAATCAAGATCCAAGAAGATTTAATCGTCTGATGCTGCAACAGACAAGAAAGGGAATAATGAGAATGCACGAGTATCTTGACATTATGAAAAGGTATATCGACAACCTTGCTATTGTTGGTTCTCCCATGGATATGAGGAGTTTTGTCTCTCATGTTACAACCGGTTTGGATGAGGAAGATAATGTTGTGGTGTGTGTTATGAGAAGCAAAGATCTGACTTTGAGTCAAATTCAACTGGAATTGATTGCTTTTAAGCAACGTCATGAACAACTTGAAAAGTTCAAGAATGTTGTGTCTATGAATCAAGTGTCTACAAACCGTGCAAAGCCTGAAAATCCACCAACAAACAACCATCAAAGCATTCCTCATTCAAATCAGAATAATAGAGGCTTTTATCCTTCGAAAAGAGGAGGTCACGGCAGAGGAAGAAATACGACAAACCAGAAAATACCACCTCAACCAATATGGGAAGAAACTCTATTCTACAAACCCGGAGCAAGCAACCATGTTACTAGTGAACTTGGAAATTTGTCTCTAAAAGGTAATCACTTATCTATAAAAAATATAGTTGTTGTTGATGGTACTAAGGTACCAACTACCACTGTTGGATCTGGTTATATTGAAACTTTGAATGGCATCTCACAATTAGTTCATAATAATCCAGTGATAGTTGAGTTTGATAACCTTTTTTGCTATGTTAAGGAAAGGAAGTCCAAGGAAGTTTGTCTGATGGGAGTAAATGAAGTCTCAATTTTAGTGAATAAAGAAGCTGAAGACAGAGTCTGTATGTCAGTAACCCCTACCATGAAGATTTCAAGCAAGAATGGAAATGAAGATTTGGTTTCTTTTGTTAACTATGTATTGTTTACTTGTACTCTTGATGTTTGGCACCAAAGATTGGGTCATCCATCTCCTAGAATCAAAACTACGCAAGTTACCTTTTACTCTTTCTGA

Coding sequence (CDS)

ATGGTTGACGCCTCGATCTACACTCAAATTGCTGACTCATCTAAGGAGTCGGCTACACTTGAAAGCAAAGGAGGAATAAGCAAAGTGCTCAACACCTACCAAGTCAAATCTAGGTTATCCCCAGTCGGAACTTCATCCTTCAGTATTGTGATTCCCATATTAAAAAGCTATAAGCGTGAAGGACATATGTCTGGAAAAACCCCTACTCTTGAAATGTCGATCATTCTTTCTCCATCTAACGATGAACTTGAAGGACTATTAATGCCAAATCCAAAGTATGATATCTGGATAGCAGCTGACCAATTATTGTCCAAGAGTACTATGGAGTTCAATCAAGATCCAAGAAGATTTAATCGTCTGATGCTGCAACAGACAAGAAAGGGAATAATGAGAATGCACGAGTATCTTGACATTATGAAAAGGTATATCGACAACCTTGCTATTGTTGGTTCTCCCATGGATATGAGGAGTTTTGTCTCTCATGTTACAACCGGTTTGGATGAGGAAGATAATGTTGTGGTGTGTGTTATGAGAAGCAAAGATCTGACTTTGAGTCAAATTCAACTGGAATTGATTGCTTTTAAGCAACGTCATGAACAACTTGAAAAGTTCAAGAATGTTGTGTCTATGAATCAAGTGTCTACAAACCGTGCAAAGCCTGAAAATCCACCAACAAACAACCATCAAAGCATTCCTCATTCAAATCAGAATAATAGAGGCTTTTATCCTTCGAAAAGAGGAGGTCACGGCAGAGGAAGAAATACGACAAACCAGAAAATACCACCTCAACCAATATGGGAAGAAACTCTATTCTACAAACCCGGAGCAAGCAACCATGTTACTAGTGAACTTGGAAATTTGTCTCTAAAAGGTAATCACTTATCTATAAAAAATATAGTTGTTGTTGATGGTACTAAGGTACCAACTACCACTGTTGGATCTGGTTATATTGAAACTTTGAATGGCATCTCACAATTAGTTCATAATAATCCAGTGATAGTTGAGTTTGATAACCTTTTTTGCTATGTTAAGGAAAGGAAGTCCAAGGAAGTTTGTCTGATGGGAGTAAATGAAGTCTCAATTTTAGTGAATAAAGAAGCTGAAGACAGAGTCTGTATGTCAGTAACCCCTACCATGAAGATTTCAAGCAAGAATGGAAATGAAGATTTGGTTTCTTTTGTTAACTATGTATTGTTTACTTGTACTCTTGATGTTTGGCACCAAAGATTGGGTCATCCATCTCCTAGAATCAAAACTACGCAAGTTACCTTTTACTCTTTCTGA

Protein sequence

MVDASIYTQIADSSKESATLESKGGISKVLNTYQVKSRLSPVGTSSFSIVIPILKSYKREGHMSGKTPTLEMSIILSPSNDELEGLLMPNPKYDIWIAADQLLSKSTMEFNQDPRRFNRLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMRSKDLTLSQIQLELIAFKQRHEQLEKFKNVVSMNQVSTNRAKPENPPTNNHQSIPHSNQNNRGFYPSKRGGHGRGRNTTNQKIPPQPIWEETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTKVPTTTVGSGYIETLNGISQLVHNNPVIVEFDNLFCYVKERKSKEVCLMGVNEVSILVNKEAEDRVCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVWHQRLGHPSPRIKTTQVTFYSF

Homology

[Close]

BLAST of ClCG05G015920 vs. TrEMBL
Match: A0A151SLL4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_001901 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.6e-11
Identity = 85/340 (25.00%), Postives = 138/340 (40.59%), Query Frame = 1


Query: 122 LQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMRSKD 181
           L  + KG   +  YL  ++   ++L+++   +D    V H   GLD         +R++D
Sbjct: 111 LNSSTKGSSTVIAYLQSIRSIAEDLSLIIHAVDDIDLVIHTLNGLDPSFREFTTSIRTRD 170

Query: 182 LTLS--QIQLELIAFKQRHEQLEKFKNVVSM--NQVSTNRAKPENPPTNNHQSIPHSN-- 241
             +S  ++ ++L+ ++   ++ E F +  S+  N V+  R    N   NN+ S   S   
Sbjct: 171 TPISFDELSIKLLDYEMYLKRDEHFNHQPSITANYVNQGRFHRSNKGRNNNHSSSSSTSL 230

Query: 242 --QNNRGFYPS------KRGGHGRG---RNTTNQKIPPQPIWEET--------LFYKPGA 301
             +NN             + GHG     + T N K    P+   T          +  GA
Sbjct: 231 GKRNNSSSNSDIVCQLCSKKGHGAQTCYKFTKNNKQSSNPVAYATHATTPPPEWLFNSGA 290

Query: 302 SNHVTSELGNLSLKGNHLSIKNIVVVDGTKVPTTTVGS-------------------GYI 361
           S+H+T++L NLSL   +     + V +G  +P T VGS                   G  
Sbjct: 291 SHHITNDLNNLSLTSTYTGNDKLYVANGMSLPITHVGSTTLHPPTRPLSFTNVLYAPGIT 350

Query: 362 ETLNGISQLVHNNPVIVEFDNLFCYVKERKSKEVCLMGVNEVSILVNKEAEDRVCMSVTP 418
           + L  +SQL + N V +EF   F  VK+        MG N    L+    +D V      
Sbjct: 351 QNLISVSQLCNTNDVSIEFFPSFFEVKDLS------MGAN----LLRGPKDDHVY----- 410

[Close]

BLAST of ClCG05G015920 vs. TrEMBL
Match: Q94HW7_ARATH (Polyprotein OS=Arabidopsis thaliana GN=T4M14.20 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 86/379 (22.69%), Postives = 143/379 (37.73%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+  +    D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 188

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFKNV-VSMNQVSTNRAKPENPPTNNHQSIPHSN 238
           +KD   TL++I   L+  + +   +     + ++ N VS       N   N +++  + N
Sbjct: 189 AKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDN 248

Query: 239 QNNRG-----------FYPSKRG--------------GHGRGR--------NTTNQKIPP 298
           +NN             F+P+                 GH   R        ++ N + PP
Sbjct: 249 RNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 299 QPI--WE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTKV 358
            P   W+                    GA++H+TS+  NLSL   +    +++V DG+ +
Sbjct: 309 SPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTI 368

Query: 359 PTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERKS 418
           P +  GS  + T                   L  + +L + N V VEF      VK+  +
Sbjct: 369 PISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNT 428

Query: 419 KEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVWH 427
               L G  +  +     A  + V +  +P+ K                     T   WH
Sbjct: 429 GVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSWH 487

[Close]

BLAST of ClCG05G015920 vs. TrEMBL
Match: Q94HW2_ARATH (Polyprotein OS=Arabidopsis thaliana GN=T4M14.18 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 86/379 (22.69%), Postives = 143/379 (37.73%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+  +    D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 188

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFKNV-VSMNQVSTNRAKPENPPTNNHQSIPHSN 238
           +KD   TL++I   L+  + +   +     + ++ N VS       N   N +++  + N
Sbjct: 189 AKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDN 248

Query: 239 QNNRG-----------FYPSKRG--------------GHGRGR--------NTTNQKIPP 298
           +NN             F+P+                 GH   R        ++ N + PP
Sbjct: 249 RNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 299 QPI--WE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTKV 358
            P   W+                    GA++H+TS+  NLSL   +    +++V DG+ +
Sbjct: 309 SPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTI 368

Query: 359 PTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERKS 418
           P +  GS  + T                   L  + +L + N V VEF      VK+  +
Sbjct: 369 PISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNT 428

Query: 419 KEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVWH 427
               L G  +  +     A  + V +  +P+ K                     T   WH
Sbjct: 429 GVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSWH 487

[Close]

BLAST of ClCG05G015920 vs. TrEMBL
Match: F7J130_ARATH (Polyprotein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 90/380 (23.68%), Postives = 145/380 (38.16%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+     + D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 110 RTQLKQWTKGTKTIDDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 169

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFK------NVVSMNQVST-------NRAKPENP 238
           +KD   TL++I   L+  + +   +          N VS    +T       NR    + 
Sbjct: 170 AKDTPPTLTEIHERLLNQESKILAVSSATVIPITANAVSHRNTTTTTNNNNGNRTNRYDN 229

Query: 239 PTNNHQSIPHSNQNNRGFYPSKRG--------------GHGRGR--------NTTNQKIP 298
             NN+ S P   Q++  F P+                 GH   R        ++ N + P
Sbjct: 230 RNNNNNSKPWQ-QSSSNFRPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQP 289

Query: 299 PQP--IWE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTK 358
           P P  +W+              +     GA++H+TS+  NLSL   +    +++VVDG+ 
Sbjct: 290 PSPFTLWQPRANLALGSPYSSNSWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVVDGST 349

Query: 359 VPTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERK 418
           +P +  GS  + T                   L  + +L + N V VEF      VK+  
Sbjct: 350 IPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFLASFQVKDLN 409

Query: 419 SKEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVW 427
           +    L G  +  +     A  + V +  +P+ K                     T   W
Sbjct: 410 TGVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSW 468

[Close]

BLAST of ClCG05G015920 vs. TrEMBL
Match: F7J134_ARATH (Polyprotein OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 86/379 (22.69%), Postives = 142/379 (37.47%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+       D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGFVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 188

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFKNV-VSMNQVSTNRAKPENPPTNNHQSIPHSN 238
           +KD   TL++I   L+  + +   +     + ++ N VS       N   N +++  + N
Sbjct: 189 AKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDN 248

Query: 239 QNNRG-----------FYPSKRG--------------GHGRGR--------NTTNQKIPP 298
           +NN             F+P+                 GH   R        ++ N + PP
Sbjct: 249 RNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 299 QPI--WE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTKV 358
            P   W+                    GA++H+TS+  NLSL   +    +++V DG+ +
Sbjct: 309 SPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTI 368

Query: 359 PTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERKS 418
           P +  GS  + T                   L  + +L + N V VEF      VK+  +
Sbjct: 369 PISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNT 428

Query: 419 KEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVWH 427
               L G  +  +     A  + V +  +P+ K                     T   WH
Sbjct: 429 GVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSWH 487

[Close]

BLAST of ClCG05G015920 vs. NCBI nr
Match: gi|1012344486|gb|KYP55678.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 79.0 bits (193), Expect = 2.3e-11
Identity = 85/340 (25.00%), Postives = 138/340 (40.59%), Query Frame = 1


Query: 122 LQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMRSKD 181
           L  + KG   +  YL  ++   ++L+++   +D    V H   GLD         +R++D
Sbjct: 111 LNSSTKGSSTVIAYLQSIRSIAEDLSLIIHAVDDIDLVIHTLNGLDPSFREFTTSIRTRD 170

Query: 182 LTLS--QIQLELIAFKQRHEQLEKFKNVVSM--NQVSTNRAKPENPPTNNHQSIPHSN-- 241
             +S  ++ ++L+ ++   ++ E F +  S+  N V+  R    N   NN+ S   S   
Sbjct: 171 TPISFDELSIKLLDYEMYLKRDEHFNHQPSITANYVNQGRFHRSNKGRNNNHSSSSSTSL 230

Query: 242 --QNNRGFYPS------KRGGHGRG---RNTTNQKIPPQPIWEET--------LFYKPGA 301
             +NN             + GHG     + T N K    P+   T          +  GA
Sbjct: 231 GKRNNSSSNSDIVCQLCSKKGHGAQTCYKFTKNNKQSSNPVAYATHATTPPPEWLFNSGA 290

Query: 302 SNHVTSELGNLSLKGNHLSIKNIVVVDGTKVPTTTVGS-------------------GYI 361
           S+H+T++L NLSL   +     + V +G  +P T VGS                   G  
Sbjct: 291 SHHITNDLNNLSLTSTYTGNDKLYVANGMSLPITHVGSTTLHPPTRPLSFTNVLYAPGIT 350

Query: 362 ETLNGISQLVHNNPVIVEFDNLFCYVKERKSKEVCLMGVNEVSILVNKEAEDRVCMSVTP 418
           + L  +SQL + N V +EF   F  VK+        MG N    L+    +D V      
Sbjct: 351 QNLISVSQLCNTNDVSIEFFPSFFEVKDLS------MGAN----LLRGPKDDHVY----- 410

[Close]

BLAST of ClCG05G015920 vs. NCBI nr
Match: gi|14475946|gb|AAK62793.1|AC027036_14 (polyprotein, putative [Arabidopsis thaliana])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 86/379 (22.69%), Postives = 143/379 (37.73%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+  +    D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 188

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFKNV-VSMNQVSTNRAKPENPPTNNHQSIPHSN 238
           +KD   TL++I   L+  + +   +     + ++ N VS       N   N +++  + N
Sbjct: 189 AKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDN 248

Query: 239 QNNRG-----------FYPSKRG--------------GHGRGR--------NTTNQKIPP 298
           +NN             F+P+                 GH   R        ++ N + PP
Sbjct: 249 RNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 299 QPI--WE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTKV 358
            P   W+                    GA++H+TS+  NLSL   +    +++V DG+ +
Sbjct: 309 SPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTI 368

Query: 359 PTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERKS 418
           P +  GS  + T                   L  + +L + N V VEF      VK+  +
Sbjct: 369 PISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNT 428

Query: 419 KEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVWH 427
               L G  +  +     A  + V +  +P+ K                     T   WH
Sbjct: 429 GVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSWH 487

[Close]

BLAST of ClCG05G015920 vs. NCBI nr
Match: gi|14475941|gb|AAK62788.1|AC027036_9 (polyprotein, putative [Arabidopsis thaliana])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 86/379 (22.69%), Postives = 143/379 (37.73%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+  +    D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 129 RTQLKQWTKGTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 188

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFKNV-VSMNQVSTNRAKPENPPTNNHQSIPHSN 238
           +KD   TL++I   L+  + +   +     + ++ N VS       N   N +++  + N
Sbjct: 189 AKDTPPTLTEIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDN 248

Query: 239 QNNRG-----------FYPSKRG--------------GHGRGR--------NTTNQKIPP 298
           +NN             F+P+                 GH   R        ++ N + PP
Sbjct: 249 RNNNNNSKPWQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQPP 308

Query: 299 QPI--WE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTKV 358
            P   W+                    GA++H+TS+  NLSL   +    +++V DG+ +
Sbjct: 309 SPFTPWQPRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTI 368

Query: 359 PTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERKS 418
           P +  GS  + T                   L  + +L + N V VEF      VK+  +
Sbjct: 369 PISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNT 428

Query: 419 KEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVWH 427
               L G  +  +     A  + V +  +P+ K                     T   WH
Sbjct: 429 GVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSWH 487

[Close]

BLAST of ClCG05G015920 vs. NCBI nr
Match: gi|4996365|dbj|BAA78425.1| (polyprotein [Arabidopsis thaliana])

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 90/380 (23.68%), Postives = 145/380 (38.16%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+     + D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 110 RTQLKQWTKGTKTIDDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 169

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFK------NVVSMNQVST-------NRAKPENP 238
           +KD   TL++I   L+  + +   +          N VS    +T       NR    + 
Sbjct: 170 AKDTPPTLTEIHERLLNQESKILAVSSATVIPITANAVSHRNTTTTTNNNNGNRTNRYDN 229

Query: 239 PTNNHQSIPHSNQNNRGFYPSKRG--------------GHGRGR--------NTTNQKIP 298
             NN+ S P   Q++  F P+                 GH   R        ++ N + P
Sbjct: 230 RNNNNNSKPWQ-QSSSNFRPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQP 289

Query: 299 PQP--IWE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTK 358
           P P  +W+              +     GA++H+TS+  NLSL   +    +++VVDG+ 
Sbjct: 290 PSPFTLWQPRANLALGSPYSSNSWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVVDGST 349

Query: 359 VPTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERK 418
           +P +  GS  + T                   L  + +L + N V VEF      VK+  
Sbjct: 350 IPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFLASFQVKDLN 409

Query: 419 SKEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVW 427
           +    L G  +  +     A  + V +  +P+ K                     T   W
Sbjct: 410 TGVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSW 468

[Close]

BLAST of ClCG05G015920 vs. NCBI nr
Match: gi|338746555|dbj|BAK41507.1| (polyprotein [Arabidopsis thaliana])

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 90/380 (23.68%), Postives = 145/380 (38.16%), Query Frame = 1


Query: 119 RLMLQQTRKGIMRMHEYLDIMKRYIDNLAIVGSPMDMRSFVSHVTTGLDEEDNVVVCVMR 178
           R  L+Q  KG   + +Y+     + D LA++G PMD    V  V   L EE   V+  + 
Sbjct: 110 RTQLKQWTKGTKTIDDYMQGFVTHFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIA 169

Query: 179 SKDL--TLSQIQLELIAFKQRHEQLEKFK------NVVSMNQVST-------NRAKPENP 238
           +KD   TL++I   L+  + +   +          N VS    +T       NR    + 
Sbjct: 170 AKDTPPTLTEIHERLLNQESKILAVSSATVIPITANAVSHRNTTTTTNNNNGNRTNRYDN 229

Query: 239 PTNNHQSIPHSNQNNRGFYPSKRG--------------GHGRGR--------NTTNQKIP 298
             NN+ S P   Q++  F P+                 GH   R        ++ N + P
Sbjct: 230 RNNNNNSKPWQ-QSSSNFRPNNNQSKPYLGKCQICGVQGHSAKRCSQLQHFLSSVNSQQP 289

Query: 299 PQP--IWE-------------ETLFYKPGASNHVTSELGNLSLKGNHLSIKNIVVVDGTK 358
           P P  +W+              +     GA++H+TS+  NLSL   +    +++VVDG+ 
Sbjct: 290 PSPFTLWQPRANLALGSPYSSNSWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVVDGST 349

Query: 359 VPTTTVGSGYIET-------------------LNGISQLVHNNPVIVEFDNLFCYVKERK 418
           +P +  GS  + T                   L  + +L + N V VEF      VK+  
Sbjct: 350 IPISHTGSTSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFLASFQVKDLN 409

Query: 419 SKEVCLMGVNEVSILVNKEAEDR-VCMSVTPTMKISSKNGNEDLVSFVNYVLFTCTLDVW 427
           +    L G  +  +     A  + V +  +P+ K                     T   W
Sbjct: 410 TGVPLLQGKTKDELYEWPIASSQPVSLFASPSSK--------------------ATHSSW 468

The following BLAST results are available for this feature:

BLAST of ClCG05G015920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151SLL4_CAJCA	1.6e-11	25.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
Q94HW7_ARATH	1.4e-10	22.69	Polyprotein OS=Arabidopsis thaliana GN=T4M14.20 PE=4 SV=1	[more]
Q94HW2_ARATH	1.4e-10	22.69	Polyprotein OS=Arabidopsis thaliana GN=T4M14.18 PE=4 SV=1	[more]
F7J130_ARATH	2.3e-10	23.68	Polyprotein OS=Arabidopsis thaliana PE=4 SV=1	[more]
F7J134_ARATH	2.3e-10	22.69	Polyprotein OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of ClCG05G015920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012344486\|gb\|KYP55678.1\|	2.3e-11	25.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|14475946\|gb\|AAK62793.1\|AC027036_14	1.9e-10	22.69	polyprotein, putative [Arabidopsis thaliana]	[more]
gi\|14475941\|gb\|AAK62788.1\|AC027036_9	1.9e-10	22.69	polyprotein, putative [Arabidopsis thaliana]	[more]
gi\|4996365\|dbj\|BAA78425.1\|	3.3e-10	23.68	polyprotein [Arabidopsis thaliana]	[more]
gi\|338746555\|dbj\|BAK41507.1\|	3.3e-10	23.68	polyprotein [Arabidopsis thaliana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G015920.1	ClCG05G015920.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 403..417 score: 6.0E-20coord: 119..369 score: 6.0
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 119..369 score: 6.0E-20coord: 403..417 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G015920	Watermelon (97103) v2	wcgwmbB229
ClCG05G015920	Wax gourd	wcgwgoB480
ClCG05G015920	Cucumber (Gy14) v1	cgywcgB470
ClCG05G015920	Cucurbita maxima (Rimu)	cmawcgB022
ClCG05G015920	Cucurbita maxima (Rimu)	cmawcgB412
ClCG05G015920	Cucurbita moschata (Rifu)	cmowcgB016
ClCG05G015920	Cucurbita moschata (Rifu)	cmowcgB413
ClCG05G015920	Wild cucumber (PI 183967)	cpiwcgB326
ClCG05G015920	Cucumber (Chinese Long) v2	cuwcgB309
ClCG05G015920	Melon (DHL92) v3.5.1	mewcgB479
ClCG05G015920	Watermelon (97103) v1	wcgwmB285
ClCG05G015920	Cucurbita pepo (Zucchini)	cpewcgB510
ClCG05G015920	Cucurbita pepo (Zucchini)	cpewcgB701
ClCG05G015920	Bottle gourd (USVL1VR-Ls)	lsiwcgB288
ClCG05G015920	Cucumber (Gy14) v2	cgybwcgB289
ClCG05G015920	Melon (DHL92) v3.6.1	medwcgB473
ClCG05G015920	Silver-seed gourd	carwcgB0613
ClCG05G015920	Silver-seed gourd	carwcgB0749
ClCG05G015920	Cucumber (Chinese Long) v3	cucwcgB325