ClCG05G015090 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G015090
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionGag-pol polyprotein
LocationCG_Chr05 : 26533274 .. 26533534 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATACTTATCTCCTAAGGATTCCAACGTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA

mRNA sequence

ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATACTTATCTCCTAAGGATTCCAACGTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA

Coding sequence (CDS)

ATGGTAAGTAGTCAAGGATCGAGAGACAAAAGGTTCAGGTGTAGAGAATGTGAGGGATTTGGCCATTACCAAGCTGATTGTCCAAACTTCCTAAAAAGACAAAGCAAGGGTTACACTGTAACACTATCTGATGATGACTATGAGTCAAACAGTGACTCTGATGAAGAAATTCGTGCTTTAATGAGATACTTATCTCCTAAGGATTCCAACGTGACATCTCCTTCTGATATTAAAACTCCTGTGGTGCTTGAGAAGACCTAA

Protein sequence

MVSSQGSRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSPKDSNVTSPSDIKTPVVLEKT
Homology
[Close]
BLAST of ClCG05G015090 vs. TrEMBL
Match: V9H042_SOYBN (Gag-protease polyprotein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.8e-08
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K F+C  CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 295 SHSKGFQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 354

Query: 67  SPKDSNVT 73
           S +DS+ T
Sbjct: 355 SAEDSSDT 362

[Close]
BLAST of ClCG05G015090 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.3e-08
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K  +CR CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 295 SHSKGIQCRGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 354

Query: 67  SPKDSNVT 73
           S +DS+ T
Sbjct: 355 SAEDSSDT 362

[Close]
BLAST of ClCG05G015090 vs. TrEMBL
Match: O65147_SOYBN (Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 2.4e-07
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K  +C  CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 268 SHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 327

Query: 67  SPKDSNVT 73
           S +DS+ T
Sbjct: 328 SAEDSSDT 335

[Close]
BLAST of ClCG05G015090 vs. TrEMBL
Match: Q84VI0_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-07
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K  +C  CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 296 SHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 355

Query: 67  SPKDSN 71
           S +DS+
Sbjct: 356 SDEDSS 361

[Close]
BLAST of ClCG05G015090 vs. TrEMBL
Match: Q84VI2_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-06
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRYLSP 66
           S  K  +C  CEG+GH  A+CP  LK+  KG +V  SD + E  SDSD ++ AL+     
Sbjct: 295 SHSKGIQCHGCEGYGHIIAECPTHLKKHRKGLSVCQSDTESEQESDSDRDVNALIGIFET 354

Query: 67  KDSNVTSPSDI 78
            + +  + S+I
Sbjct: 355 AEDSSDTDSEI 365

[Close]
BLAST of ClCG05G015090 vs. NCBI nr
Match: gi|659072226|ref|XP_008464114.1| (PREDICTED: copia protein [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-09
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1 

Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEEIRALMRY------ 69
           + F+CRECE FGHYQ +CP +L+RQ K Y  TLSD+D    SD DE    +  +      
Sbjct: 146 RSFKCRECEEFGHYQPECPTYLRRQKKNYYATLSDED----SDDDEVDHGMNAFTESITE 205

Query: 70  LSPKDSNVTSPSDIKTPVVLEK 86
           ++P+D N  S +D    ++LEK
Sbjct: 206 INPEDDNEFSDNDEDEELMLEK 223

[Close]
BLAST of ClCG05G015090 vs. NCBI nr
Match: gi|659120600|ref|XP_008460268.1| (PREDICTED: uncharacterized protein LOC103499147 [Cucumis melo])

HSP 1 Score: 68.6 bits (166), Expect = 6.3e-09
Identity = 29/47 (61.70%), Postives = 35/47 (74.47%), Query Frame = 1 

Query: 10  KRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDDDYESNSDSDEE 57
           + FRCRECEGFGHYQ +CP +L+RQ K Y  TLSD+D    SD DE+
Sbjct: 125 RSFRCRECEGFGHYQTECPTYLRRQKKNYCATLSDED----SDDDED 167

[Close]
BLAST of ClCG05G015090 vs. NCBI nr
Match: gi|351721388|ref|NP_001235160.1| (gag-protease polyprotein [Glycine max])

HSP 1 Score: 65.1 bits (157), Expect = 6.9e-08
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K F+C  CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 295 SHSKGFQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 354

Query: 67  SPKDSNVT 73
           S +DS+ T
Sbjct: 355 SAEDSSDT 362

[Close]
BLAST of ClCG05G015090 vs. NCBI nr
Match: gi|29423282|gb|AAO73529.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 64.7 bits (156), Expect = 9.0e-08
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K  +CR CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 295 SHSKGIQCRGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 354

Query: 67  SPKDSNVT 73
           S +DS+ T
Sbjct: 355 SAEDSSDT 362

[Close]
BLAST of ClCG05G015090 vs. NCBI nr
Match: gi|3777527|gb|AAC64917.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 7   SRDKRFRCRECEGFGHYQADCPNFLKRQSKGYTVTLSDD-DYESNSDSDEEIRALM-RYL 66
           S  K  +C  CEG+GH +A+CP  LK+Q KG +V  SDD + E  SDSD ++ AL  R+ 
Sbjct: 268 SHSKGIQCHGCEGYGHIKAECPTHLKKQRKGLSVCRSDDTESEQESDSDRDVNALTGRFE 327

Query: 67  SPKDSNVT 73
           S +DS+ T
Sbjct: 328 SAEDSSDT 335

The following BLAST results are available for this feature:
BLAST of ClCG05G015090 vs. TrEMBL
Match NameE-valueIdentityDescription
V9H042_SOYBN4.8e-0848.53Gag-protease polyprotein OS=Glycine max PE=2 SV=1[more]
Q84VH6_SOYBN6.3e-0848.53Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
O65147_SOYBN2.4e-0747.06Gag-pol polyprotein OS=Glycine max GN=pol PE=4 SV=2[more]
Q84VI0_SOYBN4.1e-0746.97Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI2_SOYBN1.6e-0638.03Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
BLAST of ClCG05G015090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659072226|ref|XP_008464114.1|2.2e-0942.68PREDICTED: copia protein [Cucumis melo][more]
gi|659120600|ref|XP_008460268.1|6.3e-0961.70PREDICTED: uncharacterized protein LOC103499147 [Cucumis melo][more]
gi|351721388|ref|NP_001235160.1|6.9e-0848.53gag-protease polyprotein [Glycine max][more]
gi|29423282|gb|AAO73529.1|9.0e-0848.53gag-pol polyprotein [Glycine max][more]
gi|3777527|gb|AAC64917.1|3.4e-0747.06gag-pol polyprotein [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G015090.1ClCG05G015090.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 8..29
score: 1.
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 6..37
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G015090Cucurbita pepo (Zucchini)cpewcgB519
ClCG05G015090Cucurbita pepo (Zucchini)cpewcgB704
ClCG05G015090Bottle gourd (USVL1VR-Ls)lsiwcgB285
ClCG05G015090Melon (DHL92) v3.6.1medwcgB149
ClCG05G015090Melon (DHL92) v3.6.1medwcgB332
ClCG05G015090Silver-seed gourdcarwcgB0885
ClCG05G015090Silver-seed gourdcarwcgB0998
ClCG05G015090Watermelon (97103) v2wcgwmbB219
ClCG05G015090Watermelon (97103) v2wcgwmbB226
ClCG05G015090Watermelon (97103) v2wcgwmbB229
ClCG05G015090Wax gourdwcgwgoB473
ClCG05G015090Watermelon (Charleston Gray)wcgwcgB142
ClCG05G015090Cucurbita maxima (Rimu)cmawcgB025
ClCG05G015090Cucurbita maxima (Rimu)cmawcgB298
ClCG05G015090Cucurbita maxima (Rimu)cmawcgB408
ClCG05G015090Cucurbita moschata (Rifu)cmowcgB019
ClCG05G015090Cucurbita moschata (Rifu)cmowcgB407
ClCG05G015090Melon (DHL92) v3.5.1mewcgB338
ClCG05G015090Watermelon (97103) v1wcgwmB285