ClCG05G015020 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G015020
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 26301845 .. 26304693 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAGCCATTGGACTCAATGCAAATTCTATTGACTTATGATTCTCGGAAAAAAGTTCCACAAGAGCTCAAAGATAAAAAATTTTTATTGCATATCGGTATGGATTTTATAATTTTAATTTCATGTGCTTTTGTTGTTTATTAGTTTGTTTTTTACTATCTTTTACTCTGCAGATGACGTTTTACTCACATGTTATCCTTATGTCTGTATCAAGAAAATTTCAAGCTTTTAAAACCACATTAACTCATAAGTATATACTTCTGTTTAAAGATGAGCCATCACTCTTGCAGACTCCTCCTCAAAAGTATTCTCATATAGATCAAGAACAGTGGACGTCATTTGTTAATAGTAAGCTATGTCAAGAGTGGGAGGTAACTAAATCTACTCAAATGTTAACACTGTTTTTGTTAGGTAACTCCAACTAATATGTTGTACAGAAATTTAGCTGTGTTCAAAGAGAAAGAAGGTTGAAATGTGTATATAACCATCACATTTCTCGTATGGGATATGTGAATCTTGCCAATGAATTAGTAAGTTATGCTAATTAAATTAAATGACTTATTCTAATATGTTTATGCTAATTAAATATGTATGTTCATATAGGACTTATTAGATGATCCTTTCTATCATTCGGCATTATGGAAGGAAGCACAAAAAGGAAAAAACCATGAATATTTTGATGACATCACTAGAGAATGTGCTAATCGAATTGTAAGTTAATATTGTGCAAAATTTATCATGACTTAAATATTGTAAAAAACTTGTAATTTGTTTTGACAGTATGAGTTAGCTGCAACACGTCAAGGTCAAGATATCTTGACTGAAGCATTGGGTACTGCAGAACATAGAGGACATGTAAGAGGAGTAGGTGATTTTGTTTCAAAATCCCAATATTTCAAGAGAGTGAAAGGAAAGTCGAAAATGAACCAAGAAACTCAAGGAACATCTAAAGAAGAGAATGTAGGAAGTGATCTGAAAGCAAAATGTAACGCTCGTAGTAGAAGGTCTCACTAACCCATATCGTCTTTGGAAGTATCTCACTAGATGCGTTTGAAAAAGGTCATGAAGATGTTGTCAAGACGCTTGAAAAAAGTTTGGAGGTAATTGTATTTGTTTTAACTTCAGAATTTCAACCATAATGCTTAATTGTTCATCACACTTATTTTTTAAAATTTGTTAAGAGAACACCATGCCACTTGGCTATAGGATTTGTGGATAACGTTGTTGCAGTAGCCATAGTATTCGATGATGATGTTGCATGTCCAATTCCTATGGGAGAAGATGTGACTATACCAATTCCTATCAAGGGAAAAATAGAGACTTTAAATCAAGTAATAGGTAACTTCGTAACATAGCCCCGCAAACTTATGATTGTGACTAAGAAGGAAAAAGTATGTCTCTTTTAACTTTATGTGTTTTGTTATTTATTCTTTTTTGCACTTTAGCATTATAATTTTGGTTGTGGTAGGATGATATAACAAGTGGGAGTATTATATATTCCTCTAAATATACGGATGTCAACGACACCATCAAGCTCCTAAATAAACATGCCATGAATTACATGAAGGAGGAAGACATGATTCTCATAAAATTGAATGAGCACTTATTTGGAAAGGAGGAATTAGTCTATTTACATTGTGGCGACCTAATGCATTATCATGGGATGGTTGAGATTGGTTACATGTGTATATTAACATACATTACGTAAGTTTTTAACATCTATTACTCATCTTGATTCATATGTGTCAAGTTTGTGTTTAATAATAATTTTTGCTTTATTTAGATATCTTTGGGATGAATGTGACCATGAGATAACCAACAATTTTGTCATAATTAATCAAACAAAAATATCACCGGTTGTAAAGTCTAAAGATATTCATTGTAGACATCTGGTTGACCAATTAGAACATGCTAGTTTGGACAAATTAGTACTTATCCCATATAACACGAGGTAAGTAAATGACAATTTATGTTGCTTTAGTTATTTTTAATTTGCATTGAATGCATAACAATATTGGAATGTTGCTTATTATAGTTATCATTGGATATTGATTGTTATCGATCTTTAAGCAAATTGTGTTTATGTTTTGGACTCTCTCTGAAGCAAGGTTGAAGAAGACTTTCATAGAGTTATAAATGTGTAAGTGTATTGAACTTTCAAAGTTTATGTTATTTTAATGGAGTTATAAATGTGCATGTGTATTAATTCAAAGTTTATATCATTCTAATGTTTCAACCTATTTAGAGGATTGAAAATTTGACAAGCTAAATATGATCTTCAACACTATCGCTCTAATCCACTTTGGAAACTCGTAAAAGTAAATTTGCATTGATACTTTAACAAATTCTTTTCATTGTAATATATGAGTAATTTTTTTTCAATTTCTTTACATGTAGTGCCCCCGTCAATTGGATTCTGTAGGGTGTGGGCACTATGCTTAAAAGTATATGTGTGAAATAATGCATAATTCTAGTACTCCCATCAATAATACTCTTGTACGTAAATTATTTATTTATGATATGGCACAATTTAATAAATGATCTAAACTTATGTTGTATTGATCTTTTTTATTTATGATGTAGTTCAATATAAAAAGGGCATATAACCAAGAAGAGATAGATGAGGTTTGAACAGAGTGGGCAAGTTTTGTTGGACAATTGGTGTAAGGCTTAAGGCTTAACATATGATATTTTTTGTGATCTTGATAGCAAGTTTTAAGTAGAATAGAAAAGTTTTGTAGGAAAGTTTTGTTTATGGTTTAGGGACATTTGGTGCAAGTATTTAAGATTTTCTATTGTTTTAATAGAATGGAAGTACGAAGTGTGGTTTGTGGAAGAACAAATGA

mRNA sequence

ATGACCAAGCCATTGGACTCAATGCAAATTCTATTGACTTATGATTCTCGGAAAAAAGTTCCACAAGAGCTCAAAGATAAAAAATTTTTATTGCATATCGATGCGTTTGAAAAAGGTCATGAAGATGTTGTCAAGACGCTTGAAAAAAGTTTGGAGAGAACACCATGCCACTTGGCTATAGGATTTGTGGATAACGTTGTTGCAGTAGCCATAGTATTCGATGATGATGTTGCATGTCCAATTCCTATGGGAGAAGATGTGACTATACCAATTCCTATCAAGGGAAAAATAGAGACTTTAAATCAAGATGATATAACAAGTGGGAGTATTATATATTCCTCTAAATATACGGATGTCAACGACACCATCAAGCTCCTAAATAAACATGCCATGAATTACATGAAGGAGGAAGACATGATTCTCATAAAATTGAATGAGCACTTATTTGGAAAGGAGGAATTAGTCTATTTACATTGTGGCGACCTAATGCATTATCATGGGATGGTTGAGATTGGTTACATGTGTATATTAACATACATTACATATCTTTGGGATGAATGTGACCATGAGATAACCAACAATTTTGTCATAATTAATCAAACAAAAATATCACCGGTTGTAAAGTCTAAAGATATTCATTGTAGACATCTGGTTGACCAATTAGAACATGCTAGTTTGGACAAATTATTATCATTGGATATTGATTGTTATCGATCTTTAAGCAAATTGTGTTTATGTTTTGGACTCTCTCTGAAGCAAGTGCCCCCGTCAATTGGATTCTGTAGGGTGTGGGCACTATGCTTAAAATTCAATATAAAAAGGGCATATAACCAAGAAGAGATAGATGAGAATGGAAGTACGAAGTGTGGTTTGTGGAAGAACAAATGA

Coding sequence (CDS)

ATGACCAAGCCATTGGACTCAATGCAAATTCTATTGACTTATGATTCTCGGAAAAAAGTTCCACAAGAGCTCAAAGATAAAAAATTTTTATTGCATATCGATGCGTTTGAAAAAGGTCATGAAGATGTTGTCAAGACGCTTGAAAAAAGTTTGGAGAGAACACCATGCCACTTGGCTATAGGATTTGTGGATAACGTTGTTGCAGTAGCCATAGTATTCGATGATGATGTTGCATGTCCAATTCCTATGGGAGAAGATGTGACTATACCAATTCCTATCAAGGGAAAAATAGAGACTTTAAATCAAGATGATATAACAAGTGGGAGTATTATATATTCCTCTAAATATACGGATGTCAACGACACCATCAAGCTCCTAAATAAACATGCCATGAATTACATGAAGGAGGAAGACATGATTCTCATAAAATTGAATGAGCACTTATTTGGAAAGGAGGAATTAGTCTATTTACATTGTGGCGACCTAATGCATTATCATGGGATGGTTGAGATTGGTTACATGTGTATATTAACATACATTACATATCTTTGGGATGAATGTGACCATGAGATAACCAACAATTTTGTCATAATTAATCAAACAAAAATATCACCGGTTGTAAAGTCTAAAGATATTCATTGTAGACATCTGGTTGACCAATTAGAACATGCTAGTTTGGACAAATTATTATCATTGGATATTGATTGTTATCGATCTTTAAGCAAATTGTGTTTATGTTTTGGACTCTCTCTGAAGCAAGTGCCCCCGTCAATTGGATTCTGTAGGGTGTGGGCACTATGCTTAAAATTCAATATAAAAAGGGCATATAACCAAGAAGAGATAGATGAGAATGGAAGTACGAAGTGTGGTTTGTGGAAGAACAAATGA

Protein sequence

MTKPLDSMQILLTYDSRKKVPQELKDKKFLLHIDAFEKGHEDVVKTLEKSLERTPCHLAIGFVDNVVAVAIVFDDDVACPIPMGEDVTIPIPIKGKIETLNQDDITSGSIIYSSKYTDVNDTIKLLNKHAMNYMKEEDMILIKLNEHLFGKEELVYLHCGDLMHYHGMVEIGYMCILTYITYLWDECDHEITNNFVIINQTKISPVVKSKDIHCRHLVDQLEHASLDKLLSLDIDCYRSLSKLCLCFGLSLKQVPPSIGFCRVWALCLKFNIKRAYNQEEIDENGSTKCGLWKNK

Homology

[Close]

BLAST of ClCG05G015020 vs. TrEMBL
Match: A0A0A0L021_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056570 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 43  VVKTLEKSLERTPCHLAIGFVDNVVAVAIVFDDDVACP----IPMG-------------E 102
           V++  E  L+  PCHLAIG +DNVVA+  +F+ DV CP    IP+G             E
Sbjct: 283 VLQEPENILKGIPCHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNIRVTVDVIMVE 342

[Close]

BLAST of ClCG05G015020 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 9.2e-44
Identity = 103/227 (45.37%), Postives = 140/227 (61.67%), Query Frame = 1


Query: 43  VVKTLEKSLERTPCHLAIGFVDNVVAVAIVFDDDVACP----IPMG-------------E 102
           V++  E  L+  PCHLAIG +DNVVA+  +F+ DV CP    IP+G             E
Sbjct: 361 VLQEPENILKGIPCHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNIRVTVDVIMVE 420

Query: 103 DVTIPIPIKGKIETLNQ----------------------DDITSGSIIYSSKYTDVNDTI 162
           DV +PIP+KG+IETLNQ                          + S   SSKYTDV+ TI
Sbjct: 421 DVALPIPLKGEIETLNQAIGNFVALPRKLVILTQEKKAPSMAATESTTQSSKYTDVHVTI 480

Query: 163 KLLNKHAMNYMKEEDMILIKLNEHLFGKEELVYLHCGDLMHYHGMVEIGYMCILTYITYL 222
           KLLN++A++ M+ +DMI I LNEH+FGKE+ +YL   D++ Y GM EIGY CILTYI  L
Sbjct: 481 KLLNRYAIHTMQVKDMIQINLNEHIFGKEKTIYLRPDDIIQYCGMTEIGYSCILTYIACL 540

Query: 223 WDECDHEITNNFVIINQTKISPVVKSKDIHCRHLVDQLEHASLDKLL 231
           W+ CD EIT  FV+++Q  IS  +KS++   R+L+ +LE A+LD+L+
Sbjct: 541 WNACDSEITKRFVLVDQATISSHIKSQENRSRNLISRLEMANLDQLV 587

[Close]

BLAST of ClCG05G015020 vs. NCBI nr
Match: gi|778691222|ref|XP_011653243.1| (PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 30.8 bits (68), Expect = 5.0e+03
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = 1


Query: 9  QILLTYDSRKKVPQELKDKKF 30
          QI LTY+S K+VPQELKD  F
Sbjct: 73 QIPLTYNSWKEVPQELKDTIF 93

HSP 2 Score: 183.7 bits (465), Expect = 4.6e-43
Identity = 111/253 (43.87%), Postives = 151/253 (59.68%), Query Frame = 1


Query: 18  KKVPQELKDKKFLLHIDAFEKGHE-DVVKTLEKSLERTPCHLAIGFVDNVVAVAIVFDDD 77
           KKV +  K  K  + +   E+  E  V++  E   +  PCHLAIG +DNVVAV  +F+ D
Sbjct: 335 KKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPCHLAIGSLDNVVAVGKMFESD 394

Query: 78  VACP----IPMG-------------EDVTIPIPIKGKIETLNQ----------------- 137
           V CP    IP+G             EDV +PIP+KG IETLNQ                 
Sbjct: 395 VQCPTIHGIPLGAENIRVTVDIAMVEDVALPIPLKGDIETLNQAIGNFVAWPRKLVIVTK 454

Query: 138 ----DDIT-SGSIIYSSKYTDVNDTIKLLNKHAMNYMKEEDMILIKLNEHLFGKEELVYL 197
                 +T S S   SSKYTDV+ TIKLLN++AM  M+ ED+I I L+EH+FGKE+ +YL
Sbjct: 455 EKKAPSLTASESTTQSSKYTDVHVTIKLLNRYAMQTMQVEDIIQISLSEHIFGKEKTIYL 514

Query: 198 HCGDLMHYHGMVEIGYMCILTYITYLWDECDHEITNNFVIINQTKISPVVKSKDIHCRHL 231
              D++ Y GM EIGY CILTYI  LW+ C+ EIT  FV+++Q  IS  +KS++   R+L
Sbjct: 515 RRDDIIQYCGMTEIGYSCILTYIACLWNVCESEITKRFVLVDQATISSHIKSQENRSRNL 574

[Close]

BLAST of ClCG05G015020 vs. NCBI nr
Match: gi|659101935|ref|XP_008451868.1| (PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo])

HSP 1 Score: 29.6 bits (65), Expect = 1.1e+04
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1


Query: 9  QILLTYDSRKKVPQELKDKKF 30
          QI +TY+S K+VPQELKD  F
Sbjct: 73 QIPVTYNSWKEVPQELKDTIF 93

HSP 2 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 43  VVKTLEKSLERTPCHLAIGFVDNVVAVAIVFDDDVACP----IPMG-------------E 102
           V++  E  L+  PCHLAIG +DNVVA+  +F+ DV CP    IP+G             E
Sbjct: 283 VLQEPENILKGIPCHLAIGSLDNVVAIGKMFESDVQCPTIHGIPLGADNIRVTVDVIMVE 342

The following BLAST results are available for this feature:

BLAST of ClCG05G015020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L021_CUCSA	2.6e-08	48.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056570 PE=4 SV=1	[more]

BLAST of ClCG05G015020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778691222\|ref\|XP_011653243.1\|	9.2e-44	45.37	PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus]	[more]
gi\|778691222\|ref\|XP_011653243.1\|	5.0e+03	71.43	PREDICTED: uncharacterized protein LOC101213947 [Cucumis sativus]	[more]
gi\|659101935\|ref\|XP_008451868.1\|	1.1e+04	66.67	PREDICTED: uncharacterized protein LOC103493028 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G015020.1	ClCG05G015020.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G015020	Watermelon (Charleston Gray)	wcgwcgB056
ClCG05G015020	Watermelon (Charleston Gray)	wcgwcgB142
ClCG05G015020	Cucurbita maxima (Rimu)	cmawcgB025
ClCG05G015020	Cucurbita maxima (Rimu)	cmawcgB298
ClCG05G015020	Cucurbita maxima (Rimu)	cmawcgB408
ClCG05G015020	Cucurbita moschata (Rifu)	cmowcgB019
ClCG05G015020	Cucurbita moschata (Rifu)	cmowcgB407
ClCG05G015020	Cucumber (Chinese Long) v2	cuwcgB241
ClCG05G015020	Melon (DHL92) v3.5.1	mewcgB338
ClCG05G015020	Watermelon (97103) v1	wcgwmB285
ClCG05G015020	Cucurbita pepo (Zucchini)	cpewcgB519
ClCG05G015020	Cucurbita pepo (Zucchini)	cpewcgB704
ClCG05G015020	Bottle gourd (USVL1VR-Ls)	lsiwcgB285
ClCG05G015020	Bottle gourd (USVL1VR-Ls)	lsiwcgB340
ClCG05G015020	Melon (DHL92) v3.6.1	medwcgB149
ClCG05G015020	Melon (DHL92) v3.6.1	medwcgB332
ClCG05G015020	Melon (DHL92) v3.6.1	medwcgB434
ClCG05G015020	Silver-seed gourd	carwcgB0035
ClCG05G015020	Silver-seed gourd	carwcgB0885
ClCG05G015020	Silver-seed gourd	carwcgB0998
ClCG05G015020	Cucumber (Chinese Long) v3	cucwcgB249
ClCG05G015020	Watermelon (97103) v2	wcgwmbB219
ClCG05G015020	Watermelon (97103) v2	wcgwmbB221
ClCG05G015020	Watermelon (97103) v2	wcgwmbB226
ClCG05G015020	Watermelon (97103) v2	wcgwmbB229
ClCG05G015020	Wax gourd	wcgwgoB473