ClCG05G014500 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G014500
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 24529407 .. 24529971 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCACCATGTTGTTTGTTAGCCTTGAGAACTTTGGTCCTCTTACAGACGCAGCCTTTCTACTTTCTCATATTTCTCATGAAGCTGACGTGAAAGCCTCAGGGTCGCGGTTGTCGATAATAACCTCCGATGGTTACCGTCACTACGTGGCTGCACTGCATATTTGGGAACCCTTTTTCGTCGACTATTATGTCCGTCATCATATCAGTTCAAGGATTTCTCTCCAAACTTTCCGTCGTACTTTGCGGCAAGCTGGAGAAAATCATTGTTCTTCAATCACCATTCCATATGAAAGAACTCAGAACACACAAACGCCTCTTCCTTCAATTTCAAAATTTAAGTTAGTATTATTTTCTCTCTTCATTACTTTCTCTTCATCTCCTCACAATAATATAATATGTGTTTTTTACCCATTTCTTGCTTTTCATTCTTGGATTGATCTTGATCGATCTCAACAAAACATAAATCTTTATTGCAATAATTTCAAGAATTCTCATTTTCTTTTTAAGTAGTCTCTCTATGCTTCAAAATATTGTTACACTTTTAGTCTTGAAGTTTTAA

mRNA sequence

ATGAGCAGCACCATGTTGTTTGTTAGCCTTGAGAACTTTGGTCCTCTTACAGACGCAGCCTTTCTACTTTCTCATATTTCTCATGAAGCTGACGTGAAAGCCTCAGGGTCGCGGTTGTCGATAATAACCTCCGATGGTTACCGTCACTACGTGGCTGCACTGCATATTTGGGAACCCTTTTTCGTCGACTATTATGTCCGTCATCATATCAGTTCAAGGATTTCTCTCCAAACTTTCCGTCGTACTTTGCGGCAAGCTGGAGAAAATCATTGTTCTTCAATCACCATTCCATATGAAAGAACTCAGAACACACAAACGCCTCTTCCTTCAATTTCAAAATTTAATCTCTCTATGCTTCAAAATATTGTTACACTTTTAGTCTTGAAGTTTTAA

Coding sequence (CDS)

ATGAGCAGCACCATGTTGTTTGTTAGCCTTGAGAACTTTGGTCCTCTTACAGACGCAGCCTTTCTACTTTCTCATATTTCTCATGAAGCTGACGTGAAAGCCTCAGGGTCGCGGTTGTCGATAATAACCTCCGATGGTTACCGTCACTACGTGGCTGCACTGCATATTTGGGAACCCTTTTTCGTCGACTATTATGTCCGTCATCATATCAGTTCAAGGATTTCTCTCCAAACTTTCCGTCGTACTTTGCGGCAAGCTGGAGAAAATCATTGTTCTTCAATCACCATTCCATATGAAAGAACTCAGAACACACAAACGCCTCTTCCTTCAATTTCAAAATTTAATCTCTCTATGCTTCAAAATATTGTTACACTTTTAGTCTTGAAGTTTTAA

Protein sequence

MSSTMLFVSLENFGPLTDAAFLLSHISHEADVKASGSRLSIITSDGYRHYVAALHIWEPFFVDYYVRHHISSRISLQTFRRTLRQAGENHCSSITIPYERTQNTQTPLPSISKFNLSMLQNIVTLLVLKF

Homology

[Close]

BLAST of ClCG05G014500 vs. TrEMBL
Match: A0A0A0KB79_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002360 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-16
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 3   STMLFVSLENFGPLTDAAFLLSHISHEADVKASGSRLSIITSDGYRH-YVAALHIWEPFF 62
           +T+ FVS++NF PL DAA LL++I+HEADV+ S ++ SII + GY H +VA+LHIWEPFF
Sbjct: 4   ATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIAT-GYSHWFVASLHIWEPFF 63

Query: 63  VDYYV-RHHISSRISLQTFRRTLRQAGENHCSSITIPYERTQN 104
            +YY+    I+SRISL     +L +A     SS+ +  +++QN
Sbjct: 64  ANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQN 105

[Close]

BLAST of ClCG05G014500 vs. NCBI nr
Match: gi|659116796|ref|XP_008458264.1| (PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-21
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 1


Query: 3   STMLFVSLENFGPLTDAAFLLSHISHEADVKASGSRLSIITSDGYRHYVAALHIWEPFFV 62
           +T+ FVSL NF PL DAA L S+I +EADVK S ++LS+IT+D  R +VA LHIWEPFF 
Sbjct: 2   ATLFFVSLHNFAPLADAAALFSNIFYEADVKVSRTQLSMITADRSRWFVAVLHIWEPFFN 61

Query: 63  DYYVRHHISSRISLQTFRRTLRQAGENHCSSITIPYERTQN 104
           DYY+   I+SRISL TF   + +A ++HCSS+ I  ++  N
Sbjct: 62  DYYIDKDITSRISLPTFHCHMNRARKDHCSSMNIRMQKGHN 102

[Close]

BLAST of ClCG05G014500 vs. NCBI nr
Match: gi|700190438|gb|KGN45642.1| (hypothetical protein Csa_6G002360 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 50/103 (48.54%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 3   STMLFVSLENFGPLTDAAFLLSHISHEADVKASGSRLSIITSDGYRH-YVAALHIWEPFF 62
           +T+ FVS++NF PL DAA LL++I+HEADV+ S ++ SII + GY H +VA+LHIWEPFF
Sbjct: 4   ATLFFVSIDNFSPLADAAALLTNIAHEADVEISRTQFSIIAT-GYSHWFVASLHIWEPFF 63

Query: 63  VDYYV-RHHISSRISLQTFRRTLRQAGENHCSSITIPYERTQN 104
            +YY+    I+SRISL     +L +A     SS+ +  +++QN
Sbjct: 64  ANYYIDEDPITSRISLPALHHSLNRARNARFSSMIMRVQKSQN 105

[Close]

BLAST of ClCG05G014500 vs. NCBI nr
Match: gi|659117591|ref|XP_008458682.1| (PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo])

HSP 1 Score: 60.1 bits (144), Expect = 3.4e-06
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1


Query: 5   MLFVSLENFGPLTDAAFLLSHISHEADVKASGSRLSIITSDGYRHYVAALHIWEPFFVDY 64
           M  V LE F PL DA  LL+ ++ +ADVK +   L II S+    +VA L +    F ++
Sbjct: 1   MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60

Query: 65  YVRHHISSRISLQTFRRTLRQAGENHCSSITIPYERTQN 104
            V H+ SS++SLQ F   +   G    SS+TI    T N
Sbjct: 61  SVDHNKSSKVSLQPFHDAMLDGGS--FSSMTIHLLDTTN 97

The following BLAST results are available for this feature:

BLAST of ClCG05G014500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB79_CUCSA	1.1e-16	48.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002360 PE=4 SV=1	[more]

BLAST of ClCG05G014500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116796\|ref\|XP_008458264.1\|	1.3e-21	54.46	PREDICTED: uncharacterized protein LOC103497732 [Cucumis melo]	[more]
gi\|700190438\|gb\|KGN45642.1\|	1.6e-16	48.54	hypothetical protein Csa_6G002360 [Cucumis sativus]	[more]
gi\|659117591\|ref\|XP_008458682.1\|	3.4e-06	38.38	PREDICTED: proliferating cell nuclear antigen-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G014500.1	ClCG05G014500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.70.10.10		coord: 5..116 score: 2.
None	No IPR available	unknown	SSF55979	DNA clamp	coord: 8..94 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G014500	Cla97C05G095780	Watermelon (97103) v2	wcgwmbB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G014500	Silver-seed gourd	carwcgB0035
ClCG05G014500	Silver-seed gourd	carwcgB0885
ClCG05G014500	Silver-seed gourd	carwcgB0998
ClCG05G014500	Cucumber (Chinese Long) v3	cucwcgB231
ClCG05G014500	Cucumber (Chinese Long) v3	cucwcgB242
ClCG05G014500	Watermelon (97103) v2	wcgwmbB219
ClCG05G014500	Watermelon (97103) v2	wcgwmbB226
ClCG05G014500	Wax gourd	wcgwgoB473
ClCG05G014500	Watermelon (Charleston Gray)	wcgwcgB053
ClCG05G014500	Watermelon (Charleston Gray)	wcgwcgB142
ClCG05G014500	Cucurbita maxima (Rimu)	cmawcgB025
ClCG05G014500	Cucurbita maxima (Rimu)	cmawcgB298
ClCG05G014500	Cucurbita maxima (Rimu)	cmawcgB408
ClCG05G014500	Cucurbita moschata (Rifu)	cmowcgB019
ClCG05G014500	Cucurbita moschata (Rifu)	cmowcgB407
ClCG05G014500	Wild cucumber (PI 183967)	cpiwcgB232
ClCG05G014500	Wild cucumber (PI 183967)	cpiwcgB242
ClCG05G014500	Cucumber (Chinese Long) v2	cuwcgB228
ClCG05G014500	Cucumber (Chinese Long) v2	cuwcgB234
ClCG05G014500	Melon (DHL92) v3.5.1	mewcgB334
ClCG05G014500	Melon (DHL92) v3.5.1	mewcgB338
ClCG05G014500	Watermelon (97103) v1	wcgwmB285
ClCG05G014500	Cucurbita pepo (Zucchini)	cpewcgB519
ClCG05G014500	Cucurbita pepo (Zucchini)	cpewcgB704
ClCG05G014500	Bottle gourd (USVL1VR-Ls)	lsiwcgB285
ClCG05G014500	Cucumber (Gy14) v2	cgybwcgB210
ClCG05G014500	Cucumber (Gy14) v2	cgybwcgB218
ClCG05G014500	Melon (DHL92) v3.6.1	medwcgB149
ClCG05G014500	Melon (DHL92) v3.6.1	medwcgB328
ClCG05G014500	Melon (DHL92) v3.6.1	medwcgB332