ClCG05G013770 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G013770
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Mutator-like transposase
Location	CG_Chr05 : 21026005 .. 21026498 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGACAAGGTGTCATGTCGTCCTTGTGATGTTGTTAGCTATATGAGAAGACATCATGGTGTAAATGTAAGTTATGACAAGGCTTGGAGAGACCGTGAAATTGCTCTCAATTCCATCAGGGGTAGTCCTAGATCCTCATATGCTCTTTTGACGTCGTTCTCAATTGCCTTAATTAGAGAAAATCCTGGTACTATTATTTTCTATATTCATTTTAATTAATTAGGCATACAAATTTATTTGCATCATATAATCCCTTTGAATGTATATTATTTATAGGAATACATACAACACAAGAATATGATGGTGAAGGTAGATTTAAGCATTATTTTATGGCCCTTGCTGCTTCCATAGATGCATGGAATTACTATTTTCCTATTATGTCTGTTGATGGTGCCACTCTAAAGAACAAAAATATGGGGATTTTGTTATCTACTTACACTCTTGATGGTAATTCGCAAATTATACTTCTTGCATATGTCATTGTTGATTAG

mRNA sequence

ATGAATGACAAGGTGTCATGTCGTCCTTGTGATGTTGTTAGCTATATGAGAAGACATCATGGTGTAAATGTAAGTTATGACAAGGCTTGGAGAGACCGTGAAATTGCTCTCAATTCCATCAGGGGTAGTCCTAGATCCTCATATGCTCTTTTGACGTCGTTCTCAATTGCCTTAATTAGAGAAAATCCTGGAATACATACAACACAAGAATATGATGGTGAAGGTAGATTTAAGCATTATTTTATGGCCCTTGCTGCTTCCATAGATGCATGGAATTACTATTTTCCTATTATGTCTGTTGATGGTGCCACTCTAAAGAACAAAAATATGGGGATTTTGTTATCTACTTACACTCTTGATGGTAATTCGCAAATTATACTTCTTGCATATGTCATTGTTGATTAG

Coding sequence (CDS)

ATGAATGACAAGGTGTCATGTCGTCCTTGTGATGTTGTTAGCTATATGAGAAGACATCATGGTGTAAATGTAAGTTATGACAAGGCTTGGAGAGACCGTGAAATTGCTCTCAATTCCATCAGGGGTAGTCCTAGATCCTCATATGCTCTTTTGACGTCGTTCTCAATTGCCTTAATTAGAGAAAATCCTGGAATACATACAACACAAGAATATGATGGTGAAGGTAGATTTAAGCATTATTTTATGGCCCTTGCTGCTTCCATAGATGCATGGAATTACTATTTTCCTATTATGTCTGTTGATGGTGCCACTCTAAAGAACAAAAATATGGGGATTTTGTTATCTACTTACACTCTTGATGGTAATTCGCAAATTATACTTCTTGCATATGTCATTGTTGATTAG

Protein sequence

MNDKVSCRPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVDGATLKNKNMGILLSTYTLDGNSQIILLAYVIVD

Homology

[Close]

BLAST of ClCG05G013770 vs. TrEMBL
Match: A5C2Y8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011863 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.7e-20
Identity = 58/134 (43.28%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 4   KVSC--RPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRE 63
           +V C  RP D+V+ +R+ +GV +SYDKAWR RE+AL SIRGSP+ SY  L S+   L ++
Sbjct: 114 EVGCEFRPKDIVADIRKQYGVQISYDKAWRARELALGSIRGSPKESYNTLPSYCYVLEQK 173

Query: 64  NPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFP-IMSVDGATLKNKNMGILLSTYTLD 123
           NPG  T    D + +FK++FM++ AS+  ++     ++++DG  LK K +G L      D
Sbjct: 174 NPGTITDIVIDCDNQFKYFFMSIGASLVGFHTSIRLVVAIDGTFLKAKYLGTLFIVACKD 233

Query: 124 GNSQIILLAYVIVD 135
           GN+QI  LA+ I D
Sbjct: 234 GNNQIYPLAFGIGD 247

[Close]

BLAST of ClCG05G013770 vs. TrEMBL
Match: A5AN76_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008803 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.8e-20
Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 1


Query: 8   RPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHT 67
           RP D++  +R  +GV +SYDKAWR RE A NSIRGSP  SY +L S+   L ++NPG  T
Sbjct: 347 RPKDIIGDIRNKYGVQISYDKAWRAREFAFNSIRGSPEESYDVLPSYCYMLEQKNPGTIT 406

Query: 68  TQEYDGEGRFKHYFMALAASIDAWNYYFP-IMSVDGATLKNKNMGILLSTYTLDGNSQII 127
               D + +FK+ FMA +A I  +      +++VDG  LK+K +G L    + DGN+QI 
Sbjct: 407 DIVTDVDNKFKYLFMAFSACISGFRTSIRLVIAVDGTFLKSKYLGTLFVAASKDGNNQIY 466

Query: 128 LLAYVIVD 135
            LA+ I D
Sbjct: 467 PLAFEIGD 474

[Close]

BLAST of ClCG05G013770 vs. TrEMBL
Match: A5B699_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042737 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 1


Query: 8   RPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHT 67
           +P D+V+ +R+ +G+ +SYDKAWR +E+AL SIRGSP  SY  L S+   L ++ PG  T
Sbjct: 149 QPKDIVADIRKQYGIQISYDKAWRAKELALGSIRGSPEESYKTLPSYCYILEQKIPGTIT 208

Query: 68  TQEYDGEGRFKHYFMALAASIDAWNYYF-PIMSVDGATLKNKNMGILLSTYTLDGNSQII 127
               D + +FK++FM++ AS+  ++    P++++D   LK K +G L      DGN+QI 
Sbjct: 209 DIVTDSDNQFKYFFMSIGASLAGFHTSIRPVVAIDRTFLKAKYLGTLFIAPCKDGNNQIY 268

Query: 128 LLAYVIVD 135
            LA+ I D
Sbjct: 269 PLAFGIGD 276

[Close]

BLAST of ClCG05G013770 vs. TrEMBL
Match: Q5GIT1_CUCME (MuDRA transposase-like OS=Cucumis melo PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.6e-18
Identity = 54/128 (42.19%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 8   RPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHT 67
           +P D++  MR+ +G+N+SY+KAWR RE A   +RGSP  SY LL  +  AL   N G   
Sbjct: 340 KPRDIIEDMRQDYGINMSYEKAWRARENAYERVRGSPEESYNLLRRYGEALKFTNSGTIF 399

Query: 68  TQEYDGEGRFKHYFMALAASIDAW-NYYFPIMSVDGATLKNKNMGILLSTYTLDGNSQII 127
             E + +  FK+ FMA+ A +  + N   P++ +DG  LKNK  G L+    LDGN+QI 
Sbjct: 400 HMELEDDRFFKYLFMAVGACVRGFLNCIRPVIVMDGTFLKNKYRGQLIVAVCLDGNNQIY 459

Query: 128 LLAYVIVD 135
            LA+ +VD
Sbjct: 460 PLAFGVVD 467

[Close]

BLAST of ClCG05G013770 vs. TrEMBL
Match: A5AJS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042506 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.0e-17
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 8   RPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHT 67
           RP D+V+ + + +GV +SYDK WR +E+ L SIRGSP  SY  L S+   L ++NPG  T
Sbjct: 560 RPKDIVADIXKXYGVQISYDKXWRAKELXLGSIRGSPEXSYNTLPSYCYVLEQKNPGTIT 619

Query: 68  TQEYDGEGRFKHYFMALAASIDAWNYYF-PIMSVDGATLKNKNMGILLSTYTLDGNSQII 127
               D + +FK++FM++ AS+  ++     ++ VDG  LK K +G L      DGN+ I 
Sbjct: 620 DIXTDCDNQFKYFFMSIXASLAGFHTSIRXVIXVDGTFLKAKYLGTLFIAXCKDGNNXIY 679

Query: 128 LLAYVIVD 135
            LA+ I D
Sbjct: 680 PLAFGISD 687

[Close]

BLAST of ClCG05G013770 vs. NCBI nr
Match: gi|659111579|ref|XP_008455803.1| (PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-46
Identity = 90/133 (67.67%), Postives = 109/133 (81.95%), Query Frame = 1


Query: 2   NDKVSCRPCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRE 61
           NDKV CRP DV++YM+ HH VN+SYDKAW  REIALNSIRG+P  SYA+L++FS ALIR 
Sbjct: 236 NDKVPCRPSDVINYMKIHHSVNISYDKAWGGREIALNSIRGTPEDSYAMLSAFSDALIRN 295

Query: 62  NPGIHTTQEYDGEGRFKHYFMALAASIDAWNYYFPIMSVDGATLKNKNMGILLSTYTLDG 121
           NPG +T +E D EGRFK YFMALAASIDAWNY  P++SVDGA +KNK +G L+ST T+DG
Sbjct: 296 NPGTYTAEEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMKNKYLGTLISTCTIDG 355

Query: 122 NSQIILLAYVIVD 135
           NSQI+ L + +VD
Sbjct: 356 NSQIVPLPFAVVD 368

[Close]

BLAST of ClCG05G013770 vs. NCBI nr
Match: gi|778730289|ref|XP_011659751.1| (PREDICTED: uncharacterized protein LOC101219435 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-32
Identity = 75/126 (59.52%), Postives = 95/126 (75.40%), Query Frame = 1


Query: 9   PCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTT 68
           P D V  ++ +H VNVSYDKAWR REIAL+SIRG+P  SYA+L +F+ ALIR N G +T 
Sbjct: 104 PNDAVP-IKINHEVNVSYDKAWRGREIALSSIRGTPEDSYAMLAAFTDALIRNNQGTYTA 163

Query: 69  QEYDGEGRFKHYFMALAASIDAWNYYFPIMSVDGATLKNKNMGILLSTYTLDGNSQIILL 128
           +E D +GRFK  FMAL  SIDAWNY  P+ SVDGA+LKNK +G+L+  YT+D   QI+ L
Sbjct: 164 EELDDKGRFK--FMALTTSIDAWNYCVPVTSVDGASLKNKYLGMLIYAYTIDRKFQIVPL 223

Query: 129 AYVIVD 135
           A+V+VD
Sbjct: 224 AFVVVD 226

[Close]

BLAST of ClCG05G013770 vs. NCBI nr
Match: gi|659082078|ref|XP_008441658.1| (PREDICTED: uncharacterized protein LOC103485740 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 6.3e-24
Identity = 56/126 (44.44%), Postives = 79/126 (62.70%), Query Frame = 1


Query: 9   PCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTT 68
           P D+V ++R  H +++SY KAWR RE+AL+   GSP  SY +L  F+  L   NPG    
Sbjct: 80  PKDIVHFIRAEHDLSISYQKAWRAREVALDDNHGSPEESYKMLPRFAYILELNNPGSVVE 139

Query: 69  QEYDGEGRFKHYFMALAASIDAWNYYFPIMSVDGATLKNKNMGILLSTYTLDGNSQIILL 128
            + D +GRF ++FM L+ SI  W +Y P++S+DG +LKNK  G LLS  T D N QI   
Sbjct: 140 YKVDVDGRFLYFFMTLSVSISGWQHYHPVISIDGTSLKNKYGGTLLSAPTPDANDQIFPP 199

Query: 129 AYVIVD 135
           A+ ++D
Sbjct: 200 AFYVMD 205

[Close]

BLAST of ClCG05G013770 vs. NCBI nr
Match: gi|659102873|ref|XP_008452360.1| (PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo])

HSP 1 Score: 115.9 bits (289), Expect = 5.3e-23
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 1


Query: 9   PCDVVSYMRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTT 68
           P D++ +MR   GVNVSY KAWR +E+ +NS+ G  + SYAL+ +F + L   NPG  T 
Sbjct: 101 PNDIMIHMRTKLGVNVSYYKAWRAKELLMNSLNGEAKESYALIPNFCMKLKEINPGSFTA 160

Query: 69  QEYDGEGRFKHYFMALAASIDAWNYYFPIMSVDGATLKNKNMGILLSTYTLDGNSQIILL 128
            E D EG FK+ FMA+ A I+ W Y+ P +SVD   LK+K  G LL+  T++G +QI  L
Sbjct: 161 YETDTEGHFKYCFMAIGACIEGWKYFQPNISVDDTFLKSKYGGTLLTASTINGKNQIFPL 220

Query: 129 AYVIVD 135
            +  VD
Sbjct: 221 TFSTVD 226

[Close]

BLAST of ClCG05G013770 vs. NCBI nr
Match: gi|659082609|ref|XP_008441933.1| (PREDICTED: uncharacterized protein LOC103485927 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 6.5e-21
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 1


Query: 16  MRRHHGVNVSYDKAWRDREIALNSIRGSPRSSYALLTSFSIALIRENPGIHTTQEYDGEG 75
           MR ++GV+VSY KAWR +E  +  ++G    SYAL+  F   L   NPG  T  E D  G
Sbjct: 1   MRMNYGVSVSYYKAWRAKESVMKLLKGDADDSYALIPKFFSKLKEINPGSFTAYEIDPNG 60

Query: 76  RFKHYFMALAASIDAWNYYFPIMSVDGATLKNKNMGILLSTYTLDGNSQIILLAYVIVD 135
            FK+ FMA+A+SI+ W Y  P ++VDG  LK K  G LL+  T+DGNS+I  LA+ IVD
Sbjct: 61  HFKYCFMAIASSIEGWRYCRPNIAVDGTFLKCKYGGTLLTATTMDGNSKIFPLAFSIVD 119

The following BLAST results are available for this feature:

BLAST of ClCG05G013770 vs. TrEMBL


Match Name	E-value	Identity	Description
A5C2Y8_VITVI	1.7e-20	43.28	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011863 PE=4 SV=1	[more]
A5AN76_VITVI	3.8e-20	44.53	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008803 PE=4 SV=1	[more]
A5B699_VITVI	1.6e-18	40.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042737 PE=4 SV=1	[more]
Q5GIT1_CUCME	3.6e-18	42.19	MuDRA transposase-like OS=Cucumis melo PE=4 SV=1	[more]
A5AJS4_VITVI	3.0e-17	40.63	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042506 PE=4 SV=1	[more]

BLAST of ClCG05G013770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111579\|ref\|XP_008455803.1\|	1.5e-46	67.67	PREDICTED: uncharacterized protein LOC103495899 [Cucumis melo]	[more]
gi\|778730289\|ref\|XP_011659751.1\|	2.2e-32	59.52	PREDICTED: uncharacterized protein LOC101219435 [Cucumis sativus]	[more]
gi\|659082078\|ref\|XP_008441658.1\|	6.3e-24	44.44	PREDICTED: uncharacterized protein LOC103485740 [Cucumis melo]	[more]
gi\|659102873\|ref\|XP_008452360.1\|	5.3e-23	46.03	PREDICTED: uncharacterized protein LOC103493421 [Cucumis melo]	[more]
gi\|659082609\|ref\|XP_008441933.1\|	6.5e-21	47.90	PREDICTED: uncharacterized protein LOC103485927 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G013770.1	ClCG05G013770.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 8..134 score: 8.0
None	No IPR available	PANTHER	PTHR31973:SF0	SUBFAMILY NOT NAMED	coord: 8..134 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G013770	Cucumber (Chinese Long) v2	cuwcgB065
ClCG05G013770	Cucumber (Chinese Long) v2	cuwcgB232
ClCG05G013770	Melon (DHL92) v3.5.1	mewcgB252
ClCG05G013770	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G013770	Watermelon (97103) v1	wcgwmB285
ClCG05G013770	Watermelon (97103) v1	wcgwmB310
ClCG05G013770	Cucurbita pepo (Zucchini)	cpewcgB332
ClCG05G013770	Cucurbita pepo (Zucchini)	cpewcgB555
ClCG05G013770	Cucurbita pepo (Zucchini)	cpewcgB613
ClCG05G013770	Bottle gourd (USVL1VR-Ls)	lsiwcgB019
ClCG05G013770	Bottle gourd (USVL1VR-Ls)	lsiwcgB369
ClCG05G013770	Bottle gourd (USVL1VR-Ls)	lsiwcgB400
ClCG05G013770	Cucumber (Gy14) v2	cgybwcgB062
ClCG05G013770	Cucumber (Gy14) v2	cgybwcgB216
ClCG05G013770	Cucumber (Gy14) v2	cgybwcgB437
ClCG05G013770	Melon (DHL92) v3.6.1	medwcgB116
ClCG05G013770	Melon (DHL92) v3.6.1	medwcgB244
ClCG05G013770	Melon (DHL92) v3.6.1	medwcgB421
ClCG05G013770	Melon (DHL92) v3.6.1	medwcgB425
ClCG05G013770	Silver-seed gourd	carwcgB0361
ClCG05G013770	Silver-seed gourd	carwcgB0428
ClCG05G013770	Cucumber (Chinese Long) v3	cucwcgB072
ClCG05G013770	Cucumber (Chinese Long) v3	cucwcgB240
ClCG05G013770	Cucumber (Chinese Long) v3	cucwcgB496
ClCG05G013770	Watermelon (97103) v2	wcgwmbB229
ClCG05G013770	Watermelon (97103) v2	wcgwmbB236
ClCG05G013770	Watermelon (97103) v2	wcgwmbB241
ClCG05G013770	Wax gourd	wcgwgoB421
ClCG05G013770	Wax gourd	wcgwgoB429
ClCG05G013770	Watermelon (Charleston Gray)	wcgwcgB157
ClCG05G013770	Watermelon (Charleston Gray)	wcgwcgB163
ClCG05G013770	Cucumber (Gy14) v1	cgywcgB043
ClCG05G013770	Cucumber (Gy14) v1	cgywcgB594
ClCG05G013770	Cucurbita maxima (Rimu)	cmawcgB120
ClCG05G013770	Cucurbita maxima (Rimu)	cmawcgB231
ClCG05G013770	Cucurbita maxima (Rimu)	cmawcgB321
ClCG05G013770	Cucurbita moschata (Rifu)	cmowcgB112
ClCG05G013770	Cucurbita moschata (Rifu)	cmowcgB215
ClCG05G013770	Wild cucumber (PI 183967)	cpiwcgB068
ClCG05G013770	Wild cucumber (PI 183967)	cpiwcgB239
ClCG05G013770	Wild cucumber (PI 183967)	cpiwcgB501