ClCG05G012850 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G012850
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ras-related protein Rab-2A
Location	CG_Chr05 : 17563591 .. 17564340 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAACTCACTCTAAAACCAAATTCCCGTCGGCCTTCCCCGCTGGCGGGGCCGTTTTCACATAGCGTGTCGTTTCAGGTCAAAAAAAGTTCTAAATTCCCTCTTCAGAACTTGCTTCAATCATCTTCCATTCCATTACATCACCAATTTCTCTGGGTTGATTTCCGCTTCTTTGTCTAGTGATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTTTACTCACAATCTTTGTTTTGATTACTTTTCTTCTGGGTTTGTTTTGAAATTGGGGTTTTTGTGTGGGTTACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCCGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGCATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTGTGAGTTTCACTTCTTATTGCGTTTGCCTTTGCAGATTTTAATTTTTTTATATATGTAAGTTGCAATATAGAATATGAGAAAGTAACAAGAACTGGAGGATTCTATTATGATGAACAATTTCAGATGGATTTTGGTTTGGTAAGTTTTTGTCTCTACCTATGGGCCTTCTGAGATCAATCTTTTGGATGTGAGAACTTTACCCTCTGGTTTCGTTGACAGGATCGGTGATCTGTGTGTGGTACCAAGAACTTTAAGTGATCCTACGAAATCTCTTCAGAAACTCAATTGTATTCGTCGATGA

mRNA sequence

AAAAAAAAAACTCACTCTAAAACCAAATTCCCGTCGGCCTTCCCCGCTGGCGGGGCCGTTTTCACATAGCGTGTCGTTTCAGGTCAAAAAAAGTTCTAAATTCCCTCTTCAGAACTTGCTTCAATCATCTTCCATTCCATTACATCACCAATTTCTCTGGGTTGATTTCCGCTTCTTTGTCTAGTGATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCCGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGCATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTAAAGTAACAAGAACTGGAGGATTCTATTATGATGAACAATTTCAGATGGATTTTGGTTTGATCAATCTTTTGGATGTGAGAACTTTACCCTCTGGTTTCGTTGACAGGATCGGTGATCTGTGTGTGGTACCAAGAACTTTAAGTGATCCTACGAAATCTCTTCAGAAACTCAATTGTATTCGTCGATGA

Coding sequence (CDS)

ATGTCGTACGATTATCTATTCAAGTACATCATCATCGGGGATACAGGTGTGGGCAAATCTTGCTTGCTATTGCAGTTCACGGACAAGAGGTTTCAGCCCGTGCACGATCTCACTATTGGCGTTGAGTTTGGTGCTCGCATGGTCACCATCGATGGCCGACCTATTAAGCTTCAGATATGGGATACTAAAGTAACAAGAACTGGAGGATTCTATTATGATGAACAATTTCAGATGGATTTTGGTTTGATCAATCTTTTGGATGTGAGAACTTTACCCTCTGGTTTCGTTGACAGGATCGGTGATCTGTGTGTGGTACCAAGAACTTTAAGTGATCCTACGAAATCTCTTCAGAAACTCAATTGTATTCGTCGATGA

Protein sequence

MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTKVTRTGGFYYDEQFQMDFGLINLLDVRTLPSGFVDRIGDLCVVPRTLSDPTKSLQKLNCIRR

Homology

[Close]

BLAST of ClCG05G012850 vs. Swiss-Prot
Match: RAB1B_ARATH (Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.3e-30
Identity = 61/62 (98.39%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-28
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. Swiss-Prot
Match: RAB1C_ARATH (Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-28
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-27
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-27
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          M+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIW
Sbjct: 1  MAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TrEMBL
Match: A0A067LDB3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10227 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TrEMBL
Match: A0A0B0NKZ8_GOSAR (Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_20317 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TrEMBL
Match: A0A0D2VKG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093900 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TrEMBL
Match: V4U726_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016688mg PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TrEMBL
Match: A0A0B0N1V8_GOSAR (Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_33117 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-28
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 131.0 bits (328), Expect = 5.2e-31
Identity = 61/62 (98.39%), Postives = 60/62 (96.77%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT+DGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTVDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TAIR10
Match: AT4G17170.1 (AT4G17170.1 RAB GTPase homolog B1C)

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 58/62 (93.55%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSY YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TID +PIKLQIW
Sbjct: 1  MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TAIR10
Match: AT4G17160.1 (AT4G17160.1 RAB GTPase homolog B1A)

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-26
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSY Y FKYIIIGDTGVGKSCLLL+FTDKRFQ VHDLTIGVEFGA+ +TID +PIKLQIW
Sbjct: 1  MSYAYRFKYIIIGDTGVGKSCLLLKFTDKRFQAVHDLTIGVEFGAKTITIDNKPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. TAIR10
Match: AT5G47200.1 (AT5G47200.1 RAB GTPase homolog 1A)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 3  YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
          YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DG+ IKLQIWDT
Sbjct: 5  YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 64

Query: 63 KVTRTGGFYYDEQFQMDFGLINLLDVRTLPS 94
                       ++   G+I   DV  L S
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVTYDVTDLES 95

[Close]

BLAST of ClCG05G012850 vs. TAIR10
Match: AT4G17530.1 (AT4G17530.1 RAB GTPase homolog 1C)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-15
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 3  YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
          YDYLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R V  DG+ IKLQIWDT
Sbjct: 5  YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 64

Query: 63 KVTRTGGFYYDEQFQMDFGLINLLDVRTLPS 94
                       ++   G+I   DV  L S
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVTYDVTDLES 95

[Close]

BLAST of ClCG05G012850 vs. NCBI nr
Match: gi|802539573|ref|XP_012071681.1| (PREDICTED: ras-related protein RABB1b [Jatropha curcas])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. NCBI nr
Match: gi|225452278|ref|XP_002270701.1| (PREDICTED: ras-related protein RABB1b [Vitis vinifera])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. NCBI nr
Match: gi|747107046|ref|XP_011101827.1| (PREDICTED: ras-related protein RABB1b [Sesamum indicum])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. NCBI nr
Match: gi|567908693|ref|XP_006446660.1| (hypothetical protein CICLE_v10016688mg [Citrus clementina])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
          MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 1  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60

Query: 61 DT 63
          DT
Sbjct: 61 DT 62

[Close]

BLAST of ClCG05G012850 vs. NCBI nr
Match: gi|629089670|gb|KCW55923.1| (hypothetical protein EUGRSUZ_I01720 [Eucalyptus grandis])

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1


Query: 1   MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
           MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW
Sbjct: 94  MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 153

Query: 61  DT 63
           DT
Sbjct: 154 DT 155

The following BLAST results are available for this feature:

BLAST of ClCG05G012850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAB1B_ARATH	9.3e-30	98.39	Ras-related protein RABB1b OS=Arabidopsis thaliana GN=RABB1B PE=2 SV=1	[more]
RAB2B_MAIZE	8.7e-28	93.55	Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1	[more]
RAB1C_ARATH	8.7e-28	93.55	Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=1 SV=1	[more]
RAB2_LYMST	1.5e-27	93.55	Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1	[more]
RAB2A_MACFA	3.3e-27	91.94	Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1	[more]

BLAST of ClCG05G012850 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067LDB3_JATCU	7.9e-28	100.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10227 PE=4 SV=1	[more]
A0A0B0NKZ8_GOSAR	7.9e-28	100.00	Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_20317 PE=4 SV=1	[more]
A0A0D2VKG4_GOSRA	7.9e-28	100.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G093900 PE=4 SV=1	[more]
V4U726_9ROSI	7.9e-28	100.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016688mg PE=4 SV=1	[more]
A0A0B0N1V8_GOSAR	7.9e-28	100.00	Ras-related RABB1b-like protein OS=Gossypium arboreum GN=F383_33117 PE=4 SV=1	[more]

BLAST of ClCG05G012850 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G35860.1	5.2e-31	98.39	GTP-binding 2	[more]
AT4G17170.1	4.9e-29	93.55	RAB GTPase homolog B1C	[more]
AT4G17160.1	6.6e-26	85.48	RAB GTPase homolog B1A	[more]
AT5G47200.1	1.4e-15	47.25	RAB GTPase homolog 1A	[more]
AT4G17530.1	1.4e-15	47.25	RAB GTPase homolog 1C	[more]

BLAST of ClCG05G012850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|802539573\|ref\|XP_012071681.1\|	1.1e-27	100.00	PREDICTED: ras-related protein RABB1b [Jatropha curcas]	[more]
gi\|225452278\|ref\|XP_002270701.1\|	1.1e-27	100.00	PREDICTED: ras-related protein RABB1b [Vitis vinifera]	[more]
gi\|747107046\|ref\|XP_011101827.1\|	1.1e-27	100.00	PREDICTED: ras-related protein RABB1b [Sesamum indicum]	[more]
gi\|567908693\|ref\|XP_006446660.1\|	1.1e-27	100.00	hypothetical protein CICLE_v10016688mg [Citrus clementina]	[more]
gi\|629089670\|gb\|KCW55923.1\|	1.1e-27	100.00	hypothetical protein EUGRSUZ_I01720 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016020	membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G012850.1	ClCG05G012850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 8..62 score: 2.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 2..63 score: 2.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..63 score: 6.26
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 30..46 score: 8.2E-18coord: 48..70 score: 8.2E-18coord: 7..28 score: 8.2
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 1..62 score: 2.2
None	No IPR available	PANTHER	PTHR24073:SF597	RAS-RELATED PROTEIN RABB1B	coord: 1..62 score: 2.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 7..94 score: 1.
None	No IPR available	PROFILE	PS51419	RAB	coord: 2..124 score: 11

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G012850	Cucurbita pepo (Zucchini)	cpewcgB613
ClCG05G012850	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G012850	Cucumber (Gy14) v2	cgybwcgB216
ClCG05G012850	Melon (DHL92) v3.6.1	medwcgB418
ClCG05G012850	Melon (DHL92) v3.6.1	medwcgB425
ClCG05G012850	Silver-seed gourd	carwcgB0361
ClCG05G012850	Cucumber (Chinese Long) v3	cucwcgB240
ClCG05G012850	Watermelon (97103) v2	wcgwmbB229
ClCG05G012850	Wax gourd	wcgwgoB429
ClCG05G012850	Cucumber (Gy14) v1	cgywcgB261
ClCG05G012850	Cucurbita maxima (Rimu)	cmawcgB120
ClCG05G012850	Cucurbita moschata (Rifu)	cmowcgB112
ClCG05G012850	Wild cucumber (PI 183967)	cpiwcgB239
ClCG05G012850	Cucumber (Chinese Long) v2	cuwcgB232
ClCG05G012850	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G012850	Melon (DHL92) v3.5.1	mewcgB428
ClCG05G012850	Watermelon (97103) v1	wcgwmB289