ClCG05G012670 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G012670
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 17155528 .. 17155876 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTGCCTGAGCTGTTTGAAATTCTTGCAGTTTTGAAGTAAGAAGAGAGCCTTCTTCGCTCGGATGTTCCCTCTCGAGGTCAGGAGTAAATTCTTGCTCGGAAAAACGTCATGCGTATATGAGAGACATGGAACCATTATACAACTAATTCAAGAATCCAGACTCAGTACACAGTGTGCAAGGAGGAAGAAGAAGGAGTTCCTAGTAGACGAAGAAGCAATCAAGAAATTGCGAGATATGGAGAGAAGAAATAAAATATTCCCAAACCTCAAGCTTGAGAGACAGGAGAAGCTCTGGAATTGCGGCATTAGGACATTTCTGAATCGGATTTTTCTTGGAAGATGA

mRNA sequence

ATGGATTTGCCTGAGCTGTTTGAAATTCTTGCAGTTTTGAAGAGTAAATTCTTGCTCGGAAAAACGTCATGCGTATATGAGAGACATGGAACCATTATACAACTAATTCAAGAATCCAGACTCAGTACACAGTGTGCAAGGAGGAAGAAGAAGGAGTTCCTAGTAGACGAAGAAGCAATCAAGAAATTGCGAGATATGGAGAGAAGAAATAAAATATTCCCAAACCTCAAGCTTGAGAGACAGGAGAAGCTCTGGAATTGCGGCATTAGGACATTTCTGAATCGGATTTTTCTTGGAAGATGA

Coding sequence (CDS)

ATGGATTTGCCTGAGCTGTTTGAAATTCTTGCAGTTTTGAAGAGTAAATTCTTGCTCGGAAAAACGTCATGCGTATATGAGAGACATGGAACCATTATACAACTAATTCAAGAATCCAGACTCAGTACACAGTGTGCAAGGAGGAAGAAGAAGGAGTTCCTAGTAGACGAAGAAGCAATCAAGAAATTGCGAGATATGGAGAGAAGAAATAAAATATTCCCAAACCTCAAGCTTGAGAGACAGGAGAAGCTCTGGAATTGCGGCATTAGGACATTTCTGAATCGGATTTTTCTTGGAAGATGA

Protein sequence

MDLPELFEILAVLKSKFLLGKTSCVYERHGTIIQLIQESRLSTQCARRKKKEFLVDEEAIKKLRDMERRNKIFPNLKLERQEKLWNCGIRTFLNRIFLGR
Homology
[Close]
BLAST of ClCG05G012670 vs. TrEMBL
Match: A0A0A0LC19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G598930 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-13
Identity = 52/81 (64.20%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 17 FLLGKTSCVYERHGTIIQLIQESRLSTQCARRKKKEFLVDEEAIKKLRDMERRNK-IFPN 76
          FLLGKTS VYERHGTIIQ IQE      C           EEAIKKL DMERRNK +FPN
Sbjct: 10 FLLGKTSWVYERHGTIIQQIQECSAYEVC----------KEEAIKKLGDMERRNKRLFPN 69

Query: 77 LKLERQEK-LWNCGIRTFLNR 96
          LKLERQ+K L NC I  +LNR
Sbjct: 70 LKLERQKKQLCNCCIWRYLNR 80

[Close]
BLAST of ClCG05G012670 vs. NCBI nr
Match: gi|700203114|gb|KGN58247.1| (hypothetical protein Csa_3G598930 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.7e-13
Identity = 52/81 (64.20%), Postives = 55/81 (67.90%), Query Frame = 1 

Query: 17 FLLGKTSCVYERHGTIIQLIQESRLSTQCARRKKKEFLVDEEAIKKLRDMERRNK-IFPN 76
          FLLGKTS VYERHGTIIQ IQE      C           EEAIKKL DMERRNK +FPN
Sbjct: 10 FLLGKTSWVYERHGTIIQQIQECSAYEVC----------KEEAIKKLGDMERRNKRLFPN 69

Query: 77 LKLERQEK-LWNCGIRTFLNR 96
          LKLERQ+K L NC I  +LNR
Sbjct: 70 LKLERQKKQLCNCCIWRYLNR 80

The following BLAST results are available for this feature:
BLAST of ClCG05G012670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LC19_CUCSA1.2e-1364.20Uncharacterized protein OS=Cucumis sativus GN=Csa_3G598930 PE=4 SV=1[more]
BLAST of ClCG05G012670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203114|gb|KGN58247.1|1.7e-1364.20hypothetical protein Csa_3G598930 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G012670.1ClCG05G012670.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G012670Csa3G598930Cucumber (Chinese Long) v2cuwcgB232
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G012670Melon (DHL92) v3.5.1mewcgB427
ClCG05G012670Melon (DHL92) v3.5.1mewcgB428
ClCG05G012670Watermelon (97103) v1wcgwmB289
ClCG05G012670Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G012670Cucurbita pepo (Zucchini)cpewcgB608
ClCG05G012670Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G012670Cucumber (Gy14) v2cgybwcgB216
ClCG05G012670Melon (DHL92) v3.6.1medwcgB418
ClCG05G012670Silver-seed gourdcarwcgB0360
ClCG05G012670Silver-seed gourdcarwcgB0427
ClCG05G012670Silver-seed gourdcarwcgB0473
ClCG05G012670Cucumber (Chinese Long) v3cucwcgB240
ClCG05G012670Watermelon (97103) v2wcgwmbB229
ClCG05G012670Wax gourdwcgwgoB429
ClCG05G012670Cucumber (Gy14) v1cgywcgB261
ClCG05G012670Cucurbita maxima (Rimu)cmawcgB123
ClCG05G012670Cucurbita maxima (Rimu)cmawcgB234
ClCG05G012670Cucurbita moschata (Rifu)cmowcgB107
ClCG05G012670Cucurbita moschata (Rifu)cmowcgB220
ClCG05G012670Wild cucumber (PI 183967)cpiwcgB239