ClCG05G012600 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G012600
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 16932904 .. 16933343 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGATGCAGACAAAACGGAGATACATAACTTGTCATTCTTCAAATCCCAAGGGTATTTCAAGTAAAATTACAACCATTTTTTAAACCATCAACCACTGTCCAAACAAAGATTTAAATCTGATGGTGATTCTAAAGTAACCCAATTCAAAACTCCACCTACAAAGATTAGTGTATTGTCACCTACAAGGGCTGCTCGGGTTGAGATGCTGAAAGCCAGATTTGGTGGTACCATTTTGAAAGCTCAACAAACGTTTTTTTTCCAATTCTAATATTGGTCGTCATGTTGTTGCTGCTGCTCCAAAGATTTGTTCTATAAAAGAACAAAGACGTGTGCAAAAGAAGCCCTTAACAAGATCAAGCTGACATTTGATTTTAATGAGAATCTTGATGCCATGAGAGAATTTGAAAAGTTCATTGGACTGATCTCGAGTGAA

mRNA sequence

ATGAAGATGATGCAGACAAAACGGAGATACATAACTTGTCATTCTTCAAATCCCAAGGTAACCCAATTCAAAACTCCACCTACAAAGATTAGTGTATTGTCACCTACAAGGGCTGCTCGGGTTGAGATGCTGAAAGCCAGATTTGGTGGTACCATTTTGAAAGCTCAACAAACAACAAAGACGTGTGCAAAAGAAGCCCTTAACAAGATCAAGCTGACATTTGATTTTAATGAGAATCTTGATGCCATGAGAGAATTTGAAAAGTTCATTGGACTGATCTCGAGTGAA

Coding sequence (CDS)

ATGAAGATGATGCAGACAAAACGGAGATACATAACTTGTCATTCTTCAAATCCCAAGGTAACCCAATTCAAAACTCCACCTACAAAGATTAGTGTATTGTCACCTACAAGGGCTGCTCGGGTTGAGATGCTGAAAGCCAGATTTGGTGGTACCATTTTGAAAGCTCAACAAACAACAAAGACGTGTGCAAAAGAAGCCCTTAACAAGATCAAGCTGACATTTGATTTTAATGAGAATCTTGATGCCATGAGAGAATTTGAAAAGTTCATTGGACTGATCTCGAGTGAA

Protein sequence

MKMMQTKRRYITCHSSNPKVTQFKTPPTKISVLSPTRAARVEMLKARFGGTILKAQQTTKTCAKEALNKIKLTFDFNENLDAMREFEKFIGLISSE

Homology

[Close]

BLAST of ClCG05G012600 vs. TrEMBL
Match: A0A0A0KMZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G164650 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.7e-12
Identity = 62/158 (39.24%), Postives = 72/158 (45.57%), Query Frame = 1


Query: 1   MKMMQTKRRYITCHSSNPKV--------------------------TQFKT--------- 60
           M+MMQTKRRYI  H   PKV                          T FK          
Sbjct: 1   MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNGDHELTNFKCLSPKKNNIE 60

Query: 61  -----PPTKISVLSPTRAARVEMLKARFGGTILKAQQ-------------------TTKT 90
                P T I VLSP RAARVE+LKA+FG TI KAQQ                   T KT
Sbjct: 61  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKT 120

[Close]

BLAST of ClCG05G012600 vs. TrEMBL
Match: A0A0A0KRB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162640 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-10
Identity = 46/104 (44.23%), Postives = 54/104 (51.92%), Query Frame = 1


Query: 13  CHSSNPKVTQFKTPPTKISVLSPTRAARVEMLKARFGGTILKAQQ--------------- 72
           C S    +      P  I VLSP RAARVE+LKA+FG TILKAQQ               
Sbjct: 23  CPSPKNNIAVLPIKPNTIVVLSPRRAARVEVLKAKFGSTILKAQQKLHNSNNDSNKHEYI 82

Query: 73  ---TTKTCA--------KEALNKIKLTFDFNENLDAMREFEKFI 91
              T   C+        +EAL+KI   FDFNENLD+MREF K +
Sbjct: 83  VGATPNICSIQEQRQALREALDKINPAFDFNENLDSMREFAKLL 126

[Close]

BLAST of ClCG05G012600 vs. NCBI nr
Match: gi|700195092|gb|KGN50269.1| (hypothetical protein Csa_5G164650 [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 6.8e-12
Identity = 62/158 (39.24%), Postives = 72/158 (45.57%), Query Frame = 1


Query: 1   MKMMQTKRRYITCHSSNPKV--------------------------TQFKT--------- 60
           M+MMQTKRRYI  H   PKV                          T FK          
Sbjct: 1   MRMMQTKRRYIDYHMLKPKVLSTKVTKTMKPYNIHQRKESNGDHELTNFKCLSPKKNNIE 60

Query: 61  -----PPTKISVLSPTRAARVEMLKARFGGTILKAQQ-------------------TTKT 90
                P T I VLSP RAARVE+LKA+FG TI KAQQ                   T KT
Sbjct: 61  LLPIKPNTTIVVLSPRRAARVEVLKAKFGSTIWKAQQKLQKSNNDSNKYEYVVIGATPKT 120

[Close]

BLAST of ClCG05G012600 vs. NCBI nr
Match: gi|700195089|gb|KGN50266.1| (hypothetical protein Csa_5G162640 [Cucumis sativus])

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10
Identity = 46/104 (44.23%), Postives = 54/104 (51.92%), Query Frame = 1


Query: 13  CHSSNPKVTQFKTPPTKISVLSPTRAARVEMLKARFGGTILKAQQ--------------- 72
           C S    +      P  I VLSP RAARVE+LKA+FG TILKAQQ               
Sbjct: 23  CPSPKNNIAVLPIKPNTIVVLSPRRAARVEVLKAKFGSTILKAQQKLHNSNNDSNKHEYI 82

Query: 73  ---TTKTCA--------KEALNKIKLTFDFNENLDAMREFEKFI 91
              T   C+        +EAL+KI   FDFNENLD+MREF K +
Sbjct: 83  VGATPNICSIQEQRQALREALDKINPAFDFNENLDSMREFAKLL 126

The following BLAST results are available for this feature:

BLAST of ClCG05G012600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMZ1_CUCSA	4.7e-12	39.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G164650 PE=4 SV=1	[more]
A0A0A0KRB6_CUCSA	1.5e-10	44.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G162640 PE=4 SV=1	[more]

BLAST of ClCG05G012600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700195092\|gb\|KGN50269.1\|	6.8e-12	39.24	hypothetical protein Csa_5G164650 [Cucumis sativus]	[more]
gi\|700195089\|gb\|KGN50266.1\|	2.2e-10	44.23	hypothetical protein Csa_5G162640 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G012600.1	ClCG05G012600.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G012600	Cucurbita maxima (Rimu)	cmawcgB123
ClCG05G012600	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G012600	Cucurbita moschata (Rifu)	cmowcgB107
ClCG05G012600	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G012600	Wild cucumber (PI 183967)	cpiwcgB239
ClCG05G012600	Cucumber (Chinese Long) v2	cuwcgB232
ClCG05G012600	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G012600	Watermelon (97103) v1	wcgwmB289
ClCG05G012600	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G012600	Cucurbita pepo (Zucchini)	cpewcgB608
ClCG05G012600	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G012600	Cucumber (Gy14) v2	cgybwcgB216
ClCG05G012600	Melon (DHL92) v3.6.1	medwcgB426
ClCG05G012600	Silver-seed gourd	carwcgB0427
ClCG05G012600	Silver-seed gourd	carwcgB0473
ClCG05G012600	Cucumber (Chinese Long) v3	cucwcgB240
ClCG05G012600	Watermelon (97103) v2	wcgwmbB229
ClCG05G012600	Wax gourd	wcgwgoB429
ClCG05G012600	Cucumber (Gy14) v1	cgywcgB261