ClCG05G012500 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G012500
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 16051172 .. 16051502 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATTGATCTCTCTCTTACTAAAGACGGGAGAAGGTTAGTAATGAAAGGACTCAACCTATTGCATTTCTTAGGCTGTTGCTGACAAAAACAACCTCTCTCTCTTTCTCTTACTCTCCTCGAACCGTTTTTGCAGAATCCGCCTCCTCTTCTTCTTCAATCTACTCCGGCAGCTTCCTCCGGCTCCGACGACGCCTGAAACAAACCACTGCCGATCCTCTCTTCACCGACTATGCCCTAAAACTCCACCCAATATCCACCATGTTTGTAAGCTTTCGGATCTGAATCGGACCCTAAATCTGAAACTGGCTTCTCTCTCTGTATTCTGA

mRNA sequence

ATGAAAATTGATCTCTCTCTTACTAAAGACGGGAGAAGAATCCGCCTCCTCTTCTTCTTCAATCTACTCCGGCAGCTTCCTCCGGCTCCGACGACGCCTGAAACAAACCACTGCCGATCCTCTCTTCACCGACTATGCCCTAAAACTCCACCCAATATCCACCATGTTTGTAAGCTTTCGGATCTGAATCGGACCCTAAATCTGAAACTGGCTTCTCTCTCTGTATTCTGA

Coding sequence (CDS)

ATGAAAATTGATCTCTCTCTTACTAAAGACGGGAGAAGAATCCGCCTCCTCTTCTTCTTCAATCTACTCCGGCAGCTTCCTCCGGCTCCGACGACGCCTGAAACAAACCACTGCCGATCCTCTCTTCACCGACTATGCCCTAAAACTCCACCCAATATCCACCATGTTTGTAAGCTTTCGGATCTGAATCGGACCCTAAATCTGAAACTGGCTTCTCTCTCTGTATTCTGA

Protein sequence

MKIDLSLTKDGRRIRLLFFFNLLRQLPPAPTTPETNHCRSSLHRLCPKTPPNIHHVCKLSDLNRTLNLKLASLSVF
Homology
[Close]
BLAST of ClCG05G012500 vs. TrEMBL
Match: A0A0A0L6S4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G251900 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 24 RQLPPAPTTPETNHCRSSLHRLCPKTPPNIHHVCKLSDLNRTLNLKLASLSVF 77
          RQLPPA  T   NH RSSLH+LCPKTPP IH+V  L DLN+TLNLKLASLSVF
Sbjct: 22 RQLPPARLT---NHFRSSLHQLCPKTPPTIHYVSNLPDLNQTLNLKLASLSVF 71

[Close]
BLAST of ClCG05G012500 vs. NCBI nr
Match: gi|700202547|gb|KGN57680.1| (hypothetical protein Csa_3G251900 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 40/53 (75.47%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 24 RQLPPAPTTPETNHCRSSLHRLCPKTPPNIHHVCKLSDLNRTLNLKLASLSVF 77
          RQLPPA  T   NH RSSLH+LCPKTPP IH+V  L DLN+TLNLKLASLSVF
Sbjct: 22 RQLPPARLT---NHFRSSLHQLCPKTPPTIHYVSNLPDLNQTLNLKLASLSVF 71

The following BLAST results are available for this feature:
BLAST of ClCG05G012500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6S4_CUCSA2.9e-1275.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G251900 PE=4 SV=1[more]
BLAST of ClCG05G012500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202547|gb|KGN57680.1|4.1e-1275.47hypothetical protein Csa_3G251900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G012500.1ClCG05G012500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G012500Csa3G251900Cucumber (Chinese Long) v2cuwcgB233
ClCG05G012500CsaV3_3G020020Cucumber (Chinese Long) v3cucwcgB241
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G012500Cucumber (Gy14) v1cgywcgB004
ClCG05G012500Cucurbita maxima (Rimu)cmawcgB123
ClCG05G012500Cucurbita maxima (Rimu)cmawcgB234
ClCG05G012500Cucurbita moschata (Rifu)cmowcgB107
ClCG05G012500Cucurbita moschata (Rifu)cmowcgB220
ClCG05G012500Wild cucumber (PI 183967)cpiwcgB241
ClCG05G012500Melon (DHL92) v3.5.1mewcgB427
ClCG05G012500Watermelon (97103) v1wcgwmB287
ClCG05G012500Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G012500Cucurbita pepo (Zucchini)cpewcgB608
ClCG05G012500Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G012500Cucumber (Gy14) v2cgybwcgB217
ClCG05G012500Melon (DHL92) v3.6.1medwcgB426
ClCG05G012500Silver-seed gourdcarwcgB0464
ClCG05G012500Silver-seed gourdcarwcgB0473
ClCG05G012500Watermelon (97103) v2wcgwmbB229
ClCG05G012500Wax gourdwcgwgoB433