ClCG05G012360 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G012360
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon gag protein
Location	CG_Chr05 : 15708862 .. 15709376 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACGTGACGATACTAATCTTCTTCCTTTTGATCCTAAGATTGATAGAACATTTAGAAGGTATTTAAGATTTCAACACAATCCCACCAGAGGGATGACAGAAGAGATACCTAAGGCGACCCGGGATTATTTCCAACCAACACTATCGGTAAATCATCCGAAAATGTGAACGTGCCTATCAATATCTACAACTTTGAACTCAAACTGGGGTTGATTCAAATGACTAGAGAGCTTGCTTTTAGAGGATGATCAATGGAAGACCCTCACAAGCATCTTAGATCATTTAGCGAGAGGATGGTAAAGATGAATGGGGTTTTTAATGATGCGGTTAAATTAAGACTTTTTCCTTTCTCTTTACAGGACCAAGTGAAGGATTGGTTAGAAACCATATCTCCGGAAAGTATAACAACATGGGATACATTAGCCCAAGCCTTCTTGAACAAGTACTTCCCACTGGCGAAATCACAAAGGTTGAGAACGGAGATTGACACATTCCACCAACAAGCAGAATAA

mRNA sequence

ATGCAACGTGACGATACTAATCTTCTTCCTTTTGATCCTAAGATTGATAGAACATTTAGAAGGTATTTAAGATTTCAACACAATCCCACCAGAGGGATGACAGAAGAGATACCTAAGGCGACCCGGGATTATTTCCAACCAACACTATCGGACCAAGTGAAGGATTGGTTAGAAACCATATCTCCGGAAAGTATAACAACATGGGATACATTAGCCCAAGCCTTCTTGAACAAGTACTTCCCACTGGCGAAATCACAAAGGTTGAGAACGGAGATTGACACATTCCACCAACAAGCAGAATAA

Coding sequence (CDS)

ATGCAACGTGACGATACTAATCTTCTTCCTTTTGATCCTAAGATTGATAGAACATTTAGAAGGTATTTAAGATTTCAACACAATCCCACCAGAGGGATGACAGAAGAGATACCTAAGGCGACCCGGGATTATTTCCAACCAACACTATCGGACCAAGTGAAGGATTGGTTAGAAACCATATCTCCGGAAAGTATAACAACATGGGATACATTAGCCCAAGCCTTCTTGAACAAGTACTTCCCACTGGCGAAATCACAAAGGTTGAGAACGGAGATTGACACATTCCACCAACAAGCAGAATAA

Protein sequence

MQRDDTNLLPFDPKIDRTFRRYLRFQHNPTRGMTEEIPKATRDYFQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQQAE

Homology

[Close]

BLAST of ClCG05G012360 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-07
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 25 FQHNPTRGMTEEIPKATRDYFQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAK 84
          F+HN   G+T++  +     F  +L+++ K WL ++ P +ITTWD L  AFL KYFPLAK
Sbjct: 22 FKHN---GVTDDAIRLR--LFPFSLNNKAKAWLISLPPGTITTWDGLVNAFLAKYFPLAK 81

Query: 85 SQRLRTEIDTFHQQ 99
          S ++R +I  F QQ
Sbjct: 82 STKMRNDITNFLQQ 90

[Close]

BLAST of ClCG05G012360 vs. TrEMBL
Match: Q2AA09_ASPOF (Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.1e-07
Identity = 27/54 (50.00%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 45 FQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQQ 99
          F  +L D+ + WL+++ P SITTWD L++AFL KYFP +K+ +LR +I TF Q+
Sbjct: 14 FPFSLRDKARAWLQSLPPGSITTWDQLSEAFLAKYFPPSKTAQLRNQITTFTQK 67

[Close]

BLAST of ClCG05G012360 vs. TrEMBL
Match: W9QKY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012582 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-06
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 45  FQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQQAE 101
           F  +L D+ K WL ++SP SIT+W+ L Q FL+K+FP AK+ ++R EI+ F Q  +
Sbjct: 612 FPFSLRDKAKSWLNSLSPNSITSWEDLVQKFLSKFFPPAKTAKMRIEINNFAQNKD 667

[Close]

BLAST of ClCG05G012360 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 26/67 (38.81%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 31  RGMTEEIPKATRDYFQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRT 90
           +G++EE+ +     F  +L D+ + WL T+ P+S+T W+ LA+ FL KYFP  ++ + R+
Sbjct: 89  QGVSEEVLRLK--LFPFSLRDRARSWLNTLPPDSVTNWNDLAEKFLRKYFPPTRNAKFRS 148

Query: 91  EIDTFHQ 98
           EI +F Q
Sbjct: 149 EIMSFQQ 153

[Close]

BLAST of ClCG05G012360 vs. TrEMBL
Match: A5B3J2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.0e-06
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 45  FQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQQ 99
           F  +L+++ K WL ++ P +ITTWD L  AFL KYFP AKS ++R +I  F QQ
Sbjct: 299 FPFSLNNKAKAWLISLPPGTITTWDGLVNAFLTKYFPPAKSIKMRNDITNFLQQ 352

[Close]

BLAST of ClCG05G012360 vs. NCBI nr
Match: gi|802538129|ref|XP_012067037.1| (PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas])

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-08
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 45  FQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQ 98
           F  TL D+ K WL ++ P SITTW+ LAQAFL+KYFPLAK+ +L  EI +F Q
Sbjct: 124 FPFTLKDKAKAWLNSLPPNSITTWEQLAQAFLSKYFPLAKTAKLIKEITSFTQ 176

[Close]

BLAST of ClCG05G012360 vs. NCBI nr
Match: gi|802647417|ref|XP_012079828.1| (PREDICTED: uncharacterized protein LOC105640191 [Jatropha curcas])

HSP 1 Score: 65.9 bits (159), Expect = 4.7e-08
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 48  TLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQ 98
           TL D+ K WL ++S  SITTW+ LAQAFL+KYFPLAK+ RL  EI +F Q
Sbjct: 92  TLKDKAKAWLNSLSANSITTWEQLAQAFLSKYFPLAKTARLIKEITSFTQ 141

[Close]

BLAST of ClCG05G012360 vs. NCBI nr
Match: gi|802562772|ref|XP_012066545.1| (PREDICTED: uncharacterized protein LOC105629545 [Jatropha curcas])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 1


Query: 45  FQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQ 98
           F  TL D+ K WL ++ P  +TTW+ LAQAFL+KYFPLAK+ RL  EI +F Q
Sbjct: 73  FPFTLKDKAKAWLNSLPPNCMTTWEQLAQAFLSKYFPLAKTARLIKEITSFTQ 125

[Close]

BLAST of ClCG05G012360 vs. NCBI nr
Match: gi|802558716|ref|XP_012065789.1| (PREDICTED: uncharacterized protein LOC105628914 [Jatropha curcas])

HSP 1 Score: 62.8 bits (151), Expect = 4.0e-07
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 45  FQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAKSQRLRTEIDTFHQ 98
           F  TL D+ K WL  + P SITTW+ LAQAFL+K FPLAK+ RL  EI +F Q
Sbjct: 88  FPFTLKDKAKAWLNLLPPNSITTWEQLAQAFLSKDFPLAKAARLIKEITSFTQ 140

[Close]

BLAST of ClCG05G012360 vs. NCBI nr
Match: gi|147845547|emb|CAN78493.1| (hypothetical protein VITISV_037041 [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 5.2e-07
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 1


Query: 25 FQHNPTRGMTEEIPKATRDYFQPTLSDQVKDWLETISPESITTWDTLAQAFLNKYFPLAK 84
          F+HN   G+T++  +     F  +L+++ K WL ++ P +ITTWD L  AFL KYFPLAK
Sbjct: 22 FKHN---GVTDDAIRLR--LFPFSLNNKAKAWLISLPPGTITTWDGLVNAFLAKYFPLAK 81

Query: 85 SQRLRTEIDTFHQQ 99
          S ++R +I  F QQ
Sbjct: 82 STKMRNDITNFLQQ 90

The following BLAST results are available for this feature:

BLAST of ClCG05G012360 vs. TrEMBL


Match Name	E-value	Identity	Description
A5AZ88_VITVI	3.6e-07	44.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1	[more]
Q2AA09_ASPOF	8.1e-07	50.00	Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1	[more]
W9QKY9_9ROSA	1.1e-06	46.43	Uncharacterized protein OS=Morus notabilis GN=L484_012582 PE=4 SV=1	[more]
U5CUI2_AMBTC	4.0e-06	38.81	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=...	[more]
A5B3J2_VITVI	9.0e-06	50.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1	[more]

BLAST of ClCG05G012360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|802538129\|ref\|XP_012067037.1\|	3.6e-08	58.49	PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas]	[more]
gi\|802647417\|ref\|XP_012079828.1\|	4.7e-08	62.00	PREDICTED: uncharacterized protein LOC105640191 [Jatropha curcas]	[more]
gi\|802562772\|ref\|XP_012066545.1\|	1.4e-07	56.60	PREDICTED: uncharacterized protein LOC105629545 [Jatropha curcas]	[more]
gi\|802558716\|ref\|XP_012065789.1\|	4.0e-07	58.49	PREDICTED: uncharacterized protein LOC105628914 [Jatropha curcas]	[more]
gi\|147845547\|emb\|CAN78493.1\|	5.2e-07	44.59	hypothetical protein VITISV_037041 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G012360.1	ClCG05G012360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 45..98 score: 9.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G012360	Silver-seed gourd	carwcgB0464
ClCG05G012360	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G012360	Watermelon (97103) v2	wcgwmbB229
ClCG05G012360	Wax gourd	wcgwgoB433
ClCG05G012360	Cucumber (Gy14) v1	cgywcgB004
ClCG05G012360	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G012360	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G012360	Wild cucumber (PI 183967)	cpiwcgB241
ClCG05G012360	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G012360	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G012360	Watermelon (97103) v1	wcgwmB287
ClCG05G012360	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G012360	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G012360	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G012360	Melon (DHL92) v3.6.1	medwcgB426