ClCG05G012300 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G012300
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 15590217 .. 15594781 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGTACCTTCTGTGGAGTATTGTTGTGAGTGGCTTATGAGTATTCGGAGGAACTTGGGATTGTATTGAACGAACAATTTATCTCTAATTTAGGCTTCCCAGTATATGACATCTCTTATCGTCAGTTAAGTATATTACATGTTAATGCAACGTGCAAAATGAGATTTCCAGTGGTGGGCTTTGGAGCGGTAATTGGGTCCTCTTCAAGATCTATGATGGCTTCTATGCATGGTTTTCAAAAGTTATCTTTGACCCCAACAGGTGCTGAAGCGTTGGCTATTTATGAGGGTCTAAGATTGATGGTTAGATTGGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAAATGCTCAGAGGCGTGAGGAGAGTCCAAGTGGATTTAGCCAATTATGTGGTTGATATTAAAAGATTGCAGCTTCTTTCCGGTCTGTGGTGTTCCAATATGTGCCTCGTTTGTCAAATTCAGTGGCTGATGAGTTGGCAAGGACGAGATGTATTGGGTCAAGTGCTTTGTGCCGTGATTGCTTCTCCTCGAGGATTGTCTCTATATACTCACGTGATTTTTCTTTTCTAACCAGTCATAGAACTTTATAGTTTTGTTGTTACGTTTGTATAAAAAAAATTATGTATATACATAATTTGATAAGTAATTATTTCTTCTATTATGAATTATTTTATTCAGACTTTTCAATAGTTTTGTTTAGAAGAATGGAATAGTGACTATTTAAATCGATTGAGTTTTCAAATAAAATAACAAATTGGAAAAAGTTTCCTGAACAAACCGATTTCCACAATTTTTTTTTTTGCAAAATTAATGGGGTGTTTGGGAGATCGTAATGAGATGGGATTGTAATGTAATGTAATCCAAAATAAATGTTTGGATTGAGCATTTTGGGCTTGATTTGTAATACAAAACTCATTCTATTCCGATAGTTTTCAACCCAACCATATTTTCAACCGTTTTCACGATCTCATTTTTGTTTTTTCCTCGAGTTCTCACACATTCCAATGTTCCTCTGATTTTCAGTAATTCTATTATATTCCAGCTACCTAAATAACCTCTAAACAGAAAATATAGACAAAGATACATAAGACATCTCTGATATCACAATGTCACATAAACATTCTTATTTTAAATACAAAAATTATGGAAAGAAAGATTTGATGTTAAAGGCTACATAAATAAATTAATTTTGACTCATTAAAATGGATTGTTAGGTCATCACCGTTGTCTTTCATTTCTCATGTCCTTGTTTAAAGGGCTATGTTCGTAAATTTCAATTTTCTTGCTTATAAATTATAGGTGGATGGTCAAAATGACCACAATTATTCAATTAATGGAAAAATATGATTGTGGTTTCTTGTTGACAACTTTTCCATTATTAATCAAATAACCATACAAAAAAACGTGAAAAGAGAGTTGAATAACACTAAAAAAATTGACATTCTTAAATAATTAAAAAGCAAGTCTAGTAGATTATTGGTCAACAACAACATAACTTAATTATCATTCAGAGTATAATCTTTATCAAAAATAAATAAAATTAGAAATTAAAAATTTTCACTTACGTATTATTGAACTAAAAAAAGAAAAAAAAATTAAATTAAATTTTCATATAGACCATAAAGGAGTATCAGGAAATAACATACATAATAAAGTTTTAAAAAACTTCCACTATACATTATAATGTTGAATTATAATAGATTTTCTCTAATCACCGCTAAAGAATGGTCAAAATAGAATACAAAATATAGTCCTAAATTAGTTACCACTTTACCTAAAACTAATATAAAATATGCAAATGTAAAATAATCCTAGAGAGAATATAATATAAACAACAACATTAGTAATTCATAGTAAACAAATAGCTAACACCCATTTCATAATTATTTAGACTCCGTTTGGTAACTATTTTAGCTTTTGTTTTTAATTTTGAAAATTAACCCTATTTCCTTCTCATTTCTTATATTGATTTTGCATCTCTCTTGGTACAATAGGTTAATTATTTGCCAAATTCCAAAAACAAGAGCAAGTTTTTAAAAGCTATTTTTTTTTTTTTAGTTTTCAAATTTTGGTTTGGTTTTTTAAACCCTCGGTAAAAAATAGATAACAAAGAAATAAAGTTGAAGGTAGAAATAGTGTCTATAGGCTTAATTTTAAAAAACAAAAACAAAAAACTAAATGGTTACAAAATGGTGCCTAGTTTTTTGTTTTTAGTTTTTGAAAATTGAGCCTAGAAACACTTTACCGCTTCTAAATTTTTTGTTTTGTTATTTATTTTTTACTAGTGTTTTAAAAAACCAAGCCAAATTTTGAAAATTATGAAAGTAGTTTTTAAAAACTTGTTTTCTATTTTAGAATTTGGCTTGGACTTAAGAAAAATGCAAACTATTTAAGAAATTGAGAGGAATTATACTTTTTTTTTTTTTTTTATAAAATACTGGTTACTAAATAGGGCCTAAAATATCATTTTAATCGTATTTTGAAGTTTATTTAATTTTAATTCATGTTACTTTTAAATTTTAAATTTTAGTCTTTATACTTTTAATAAACTTTAAATCTAATCCACCAAAGTTAACTTTTTATTGAAATTGGCTAAATAAATAATAATAATTTTTTACTTGAAAACAAAAAGTATATGTTTTCAAAATTTATGGTGAAAATACTAATACATAACAAAAGGTATTTAAGAAATCAACAATAAACTAGAATTAGATAAAAAATACAATTACTACGACCCTAAGTTTTATTTTTATTTTTTAAAAATTAAACCTATAAACATTTCTTCCACCTTTAAATTTCTTGTTTTATTATCTATTTTTACCAATGTTTTCAAAAATCATGCTAAAATTTGAAGCTAAAAAGAGTCATTTTTAAAATGTATTTTTTTGTTTTTAAAATTTGAATAAAAATTCAATTTTTGGATTTAGAAAAGATTCAAACCATTTTTAAAAAAATCAAAAGAAAATAGGTTTAATTTTCAAAAACCAAAAATTAAAACGAAACCTACCATACCAAAAGTTAATGATGATTAATTCGGTGAAGTAGGCATCCCAAGTTATTTTTCCCTTAATTTCAATTATACTTGGTATGCTTTCTATAATTCACTTGCATAGTTTTGTTTAATCAATCAAACAGATTATTGTTTAATTAATTTAGTAAAAATTATCAACAAATTTTCTCGAAACGAAGATTTTCTATCACATGAATTGTAAGTCCTCATTCCTATTTTTCTTTGCCTAAATTTAAGTTAAAAATAAATGAGCCAAGGTGGACTTGAGATGACTTGAATAAAAGAGATTTTTACATAAATAATCATCTTGGGCCATATATTTCATAATTGTCTTTAAATTTGAATTTTTCTAAATAAGACTTTAGAGTTAATTTTGGACAATTTTACCATTTTTCCATTTATTTATATGCGTTTTTTATATATATTTACCTAATTACAAAACTCCTTTAATGATGAAGAGAGAAAAAAAACATTTATCATGGAGCGAGAATATACATTTAATATGATTTTTTTTCCATTTTCAATTGGAGATAGAAAATGCATTTAATATAATTTTTTCCAATTTTCAATTGGAGAGAGAAAATCAATTTAATATGATATATTTTCCCATTTTCACATCAATTTGTTGGTTTCAAGCGTCTTCTTCGTTTTTCATGTTATTTTTACATGTACCTTTGAACATTGTATTAGATATTTTATGTTTTAACCAATATATGAAATATATTGGTAAATATATTTGATATGTACTAAAATACAACTAGTTCCACGATAACTTGTTGGTTTTTCTAGCGAATTTATAGTTATTTTTAAATATACTTTAGAATATTGTATTAGATGCTTGTAAATATTTTAACCAATATATGAAATACAAATTTACTCAAATAGATGGTTATACCATTCAAAAGTTTTGATATAATATTATTCATATGACAGTACAATATATAAAATTCGAGTATATATTATTTAATCAAATTTCTTTATTAGTTATACTGCAGTATATAAATAACTGATTGACTCAATGTTCAATATAAATCATAGTATATATCATAAATTCTGTTTATATAGCAAAGTATATATCATAAATTCAAAAGAGTCGAAAATAAACAAAAATATATATCACAGTATATTAATCACAAATGGACTCAATGTTCAACATAAAACATATATACAAGTGTGTATATATATATCACAATATATATATAAAAAACTGTCCTCATTTATATAAAATTAACAAATATATATATCATAGTATATATATGTACTTTTATTCATCTCTTTCTTCTTTGTGAAGCACTTGTTGTCGTCACCCATCTCCACCTCTTCTTTGTGAAGCCCTAGATCTACTGCTACGTCTTCACCTTAGTCACCTTGCTCGTCGTTGCCAACTCATCGTCCTACTTATCGTGTCAACAGTTGGGTCCGTGCACTATAATCGATTGTCATTGTCCAAAACTCCGCACTACTCAAATTCACCGTGCCCCAATGCTATTGTCCAGAAACCCGCATCGTCAACCTTCGTCATCCTTCCTTGA

mRNA sequence

ATGGAAGATGTACCTTCTTATTCGGAGGAACTTGGGATTGTATTGAACGAACAATTTATCTCTAATTTAGGCTTCCCAGTATATGACATCTCTTATCGTCAGTTAAGTATATTACATGTTAATGCAACGTGCAAAATGAGATTTCCAGTGGTGGGCTTTGGAGCGGTAATTGGGTCCTCTTCAAGATCTATGATGGCTTCTATGCATGGTTTTCAAAAGTTATCTTTGACCCCAACAGGTGCTGAAGCGTTGGCTATTTATGAGGGTCTAAGATTGATGGTTAGATTGGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAAATGCTCAGAGGCGTGAGGAGAGTCCAAATTGCAGCTTCTTTCCGGTCTGTGGTGTTCCAATATGTGCCTCGTTTGTCAAATTCAGTGGCTGATGAGTTGGCAAGGACGAGATGTATTGGGTCAAGTGCTTTCACTTGTTGTCGTCACCCATCTCCACCTCTTCTTTGTGAAGCCCTAGATCTACTGCTACGTCTTCACCTTAGTCACCTTGCTCGTCGTTGCCAACTCATCGTCCTACTTATCGTGTCAACAGTTGGGTCCGTGCACTATAATCGATTGTCATTGTCCAAAACTCCGCACTACTCAAATTCACCGTGCCCCAATGCTATTGTCCAGAAACCCGCATCGTCAACCTTCGTCATCCTTCCTTGA

Coding sequence (CDS)

ATGGAAGATGTACCTTCTTATTCGGAGGAACTTGGGATTGTATTGAACGAACAATTTATCTCTAATTTAGGCTTCCCAGTATATGACATCTCTTATCGTCAGTTAAGTATATTACATGTTAATGCAACGTGCAAAATGAGATTTCCAGTGGTGGGCTTTGGAGCGGTAATTGGGTCCTCTTCAAGATCTATGATGGCTTCTATGCATGGTTTTCAAAAGTTATCTTTGACCCCAACAGGTGCTGAAGCGTTGGCTATTTATGAGGGTCTAAGATTGATGGTTAGATTGGAGTTATCTCATATGTTGGTGTTGTTTGATTCTTTAGTGGTTATTCAAATGCTCAGAGGCGTGAGGAGAGTCCAAATTGCAGCTTCTTTCCGGTCTGTGGTGTTCCAATATGTGCCTCGTTTGTCAAATTCAGTGGCTGATGAGTTGGCAAGGACGAGATGTATTGGGTCAAGTGCTTTCACTTGTTGTCGTCACCCATCTCCACCTCTTCTTTGTGAAGCCCTAGATCTACTGCTACGTCTTCACCTTAGTCACCTTGCTCGTCGTTGCCAACTCATCGTCCTACTTATCGTGTCAACAGTTGGGTCCGTGCACTATAATCGATTGTCATTGTCCAAAACTCCGCACTACTCAAATTCACCGTGCCCCAATGCTATTGTCCAGAAACCCGCATCGTCAACCTTCGTCATCCTTCCTTGA

Protein sequence

MEDVPSYSEELGIVLNEQFISNLGFPVYDISYRQLSILHVNATCKMRFPVVGFGAVIGSSSRSMMASMHGFQKLSLTPTGAEALAIYEGLRLMVRLELSHMLVLFDSLVVIQMLRGVRRVQIAASFRSVVFQYVPRLSNSVADELARTRCIGSSAFTCCRHPSPPLLCEALDLLLRLHLSHLARRCQLIVLLIVSTVGSVHYNRLSLSKTPHYSNSPCPNAIVQKPASSTFVILP
Homology
[Close]
BLAST of ClCG05G012300 vs. TAIR10
Match: AT1G10000.1 (AT1G10000.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 6.5e-06
Identity = 39/132 (29.55%), Postives = 62/132 (46.97%), Query Frame = 1 

Query: 37  ILHVNATCKMRFPVVGFGAVIGSSSRSM--MASMHGFQKLSLTPTGAEALAIYEGLRLMV 96
           + +V+A  + +  + G G V  ++S S   + +     +   +P  AEA AI   +   +
Sbjct: 161 LCYVDAAWQQQSSLAGSGWVFQATSHSEKEITTFSAGCRRFPSPLAAEAWAIKSAMLHAL 220

Query: 97  RLELSHMLVLFDSLVVIQMLRG-----------VRRVQIAASFRSVVFQYVPRLSNSVAD 155
           +LE S +LVL DS  ++  L             V    I   FRS+ FQ++PRL NS+AD
Sbjct: 221 QLERSDLLVLSDSKSIVDALNSNVSLNEIFGLLVEIRSIRNRFRSISFQFIPRLVNSIAD 280

The following BLAST results are available for this feature:
BLAST of ClCG05G012300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10000.16.5e-0629.55 Ribonuclease H-like superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G012300.1ClCG05G012300.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 38..150
score: 3.1
NoneNo IPR availablePFAMPF13456RVT_3coord: 41..147
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G012300Cucurbita pepo (Zucchini)cpewcgB518
ClCG05G012300Cucurbita pepo (Zucchini)cpewcgB557
ClCG05G012300Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G012300Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G012300Bottle gourd (USVL1VR-Ls)lsiwcgB339
ClCG05G012300Cucumber (Gy14) v2cgybwcgB207
ClCG05G012300Cucumber (Gy14) v2cgybwcgB217
ClCG05G012300Melon (DHL92) v3.6.1medwcgB422
ClCG05G012300Melon (DHL92) v3.6.1medwcgB426
ClCG05G012300Melon (DHL92) v3.6.1medwcgB427
ClCG05G012300Silver-seed gourdcarwcgB0465
ClCG05G012300Silver-seed gourdcarwcgB0464
ClCG05G012300Silver-seed gourdcarwcgB0739
ClCG05G012300Cucumber (Chinese Long) v3cucwcgB229
ClCG05G012300Cucumber (Chinese Long) v3cucwcgB241
ClCG05G012300Watermelon (97103) v2wcgwmbB229
ClCG05G012300Wax gourdwcgwgoB433
ClCG05G012300Wax gourdwcgwgoB441
ClCG05G012300Cucumber (Gy14) v1cgywcgB004
ClCG05G012300Cucumber (Gy14) v1cgywcgB005
ClCG05G012300Cucumber (Chinese Long) v2cuwcgB225
ClCG05G012300Cucurbita maxima (Rimu)cmawcgB232
ClCG05G012300Cucurbita maxima (Rimu)cmawcgB234
ClCG05G012300Cucurbita maxima (Rimu)cmawcgB407
ClCG05G012300Cucurbita moschata (Rifu)cmowcgB217
ClCG05G012300Cucurbita moschata (Rifu)cmowcgB220
ClCG05G012300Cucurbita moschata (Rifu)cmowcgB406
ClCG05G012300Wild cucumber (PI 183967)cpiwcgB229
ClCG05G012300Wild cucumber (PI 183967)cpiwcgB241
ClCG05G012300Cucumber (Chinese Long) v2cuwcgB233
ClCG05G012300Melon (DHL92) v3.5.1mewcgB427
ClCG05G012300Melon (DHL92) v3.5.1mewcgB436
ClCG05G012300Watermelon (97103) v1wcgwmB287