ClCG05G012190 (gene) Watermelon (Charleston Gray)

NameClCG05G012190
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 15452859 .. 15453173 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTGCAAAGACATAGACCATGCTAGAACTTTGGGTAACAACAGTGGATGGCAAAAAGTTGGTCCATATCGACTTCTTTACTCCCCTTGGAGACATGAGGAATTTCACAGTGAACAATTAGTCCCTTCATATGGTGGTTGGATCAAAGTTTGTGGTGTACCTATTGATAAATGGAATCTTGATTCCTTTAGATTTATTGGAGATGCTTGTGGAGGCTTGTTGGAAATGGCTAGAAAAACGCTTGCAACGATAGATCTTATAGAGATTAGCCTCAAAGTTCGGAGCAATGAACTGGTTTTTTACCAGCCATGA

mRNA sequence

ATGCACTGCAAAGACATAGACCATGCTAGAACTTTGGGTAACAACAGTGGATGGCAAAAAGTTGGTCCATATCGACTTCTTTACTCCCCTTGGAGACATGAGGAATTTCACAGTGAACAATTAGTCCCTTCATATGGTGGTTGGATCAAAGTTTGTGGTGTACCTATTGATAAATGGAATCTTGATTCCTTTAGATTTATTGGAGATGCTTGTGGAGGCTTGTTGGAAATGGCTAGAAAAACGCTTGCAACGATAGATCTTATAGAGATTAGCCTCAAAGTTCGGAGCAATGAACTGGTTTTTTACCAGCCATGA

Coding sequence (CDS)

ATGCACTGCAAAGACATAGACCATGCTAGAACTTTGGGTAACAACAGTGGATGGCAAAAAGTTGGTCCATATCGACTTCTTTACTCCCCTTGGAGACATGAGGAATTTCACAGTGAACAATTAGTCCCTTCATATGGTGGTTGGATCAAAGTTTGTGGTGTACCTATTGATAAATGGAATCTTGATTCCTTTAGATTTATTGGAGATGCTTGTGGAGGCTTGTTGGAAATGGCTAGAAAAACGCTTGCAACGATAGATCTTATAGAGATTAGCCTCAAAGTTCGGAGCAATGAACTGGTTTTTTACCAGCCATGA

Protein sequence

MHCKDIDHARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLDSFRFIGDACGGLLEMARKTLATIDLIEISLKVRSNELVFYQP
BLAST of ClCG05G012190 vs. TrEMBL
Match: E5GB30_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-18
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 1

Query: 4   KDIDHARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLDS 63
           KD + A  +  N GW  VG + + +  W  ++  S + VPSYGGWIKV  VP+  WNL+S
Sbjct: 173 KDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLES 232

Query: 64  FRFIGDACGGLLEMARKTLATIDLIEISLKVRSN 98
           F  IGDACGG +E+A++T    DLIE S++V+ N
Sbjct: 233 FVQIGDACGGFMEVAKETRELTDLIEASIRVKDN 266

BLAST of ClCG05G012190 vs. TrEMBL
Match: A0A0A0KFP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.1e-10
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1

Query: 9   ARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLDSFRFIG 68
           A  +  N GW  V  + + +  W   +  S +LVPSYGGW+   G+ +  W++++F  IG
Sbjct: 32  ATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGGWVNFRGILMHAWDMETFTQIG 91

Query: 69  DACGGLLEMARKTLATIDLIEISLKVRSN 98
           +ACG  +E+ R+    +++ +  LKV+ N
Sbjct: 92  EACGSFIEITREIKKQVEIRQAMLKVKEN 120

BLAST of ClCG05G012190 vs. NCBI nr
Match: gi|307135793|gb|ADN33672.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 1

Query: 4   KDIDHARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLDS 63
           KD + A  +  N GW  VG + + +  W  ++  S + VPSYGGWIKV  VP+  WNL+S
Sbjct: 173 KDFEQANLICKNKGWTTVGRFYVKFEEWNQKDHASPKFVPSYGGWIKVRAVPLHAWNLES 232

Query: 64  FRFIGDACGGLLEMARKTLATIDLIEISLKVRSN 98
           F  IGDACGG +E+A++T    DLIE S++V+ N
Sbjct: 233 FVQIGDACGGFMEVAKETRELTDLIEASIRVKDN 266

BLAST of ClCG05G012190 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 36/89 (40.45%), Postives = 55/89 (61.80%), Query Frame = 1

Query: 9   ARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLDSFRFIG 68
           A  L  N GW  VG Y + +  W   +  + +L+PSYGGW    G+P+  WN+ +F+ IG
Sbjct: 251 ANLLCQNKGWTTVGKYSVRFEKWCPIQHATPKLIPSYGGWTIFRGIPLHLWNMKTFQQIG 310

Query: 69  DACGGLLEMARKTLATIDLIEISLKVRSN 98
            ACGGL+++A +T +  +LIE  +K+R N
Sbjct: 311 KACGGLIKVAEETRSAKNLIEAKIKIRYN 339

BLAST of ClCG05G012190 vs. NCBI nr
Match: gi|700192460|gb|KGN47664.1| (hypothetical protein Csa_6G367105 [Cucumis sativus])

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-09
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1

Query: 9   ARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLDSFRFIG 68
           A  +  N GW  V  + + +  W   +  S +LVPSYGGW+   G+ +  W++++F  IG
Sbjct: 32  ATIMCKNRGWNPVDKFYIKFEEWNTMKHGSPKLVPSYGGWVNFRGILMHAWDMETFTQIG 91

Query: 69  DACGGLLEMARKTLATIDLIEISLKVRSN 98
           +ACG  +E+ R+    +++ +  LKV+ N
Sbjct: 92  EACGSFIEITREIKKQVEIRQAMLKVKEN 120

BLAST of ClCG05G012190 vs. NCBI nr
Match: gi|658031994|ref|XP_008351490.1| (PREDICTED: uncharacterized protein LOC103414909 [Malus domestica])

HSP 1 Score: 65.5 bits (158), Expect = 6.4e-08
Identity = 36/99 (36.36%), Postives = 51/99 (51.52%), Query Frame = 1

Query: 3   CKDIDHARTLGNNSGWQKVGPYRLLYSPWRHEEFHSEQLVPSYGGWIKVCGVPIDKWNLD 62
           CK+ + A  +        +G   +  S W      SE+ V SYGGWI + G+P   W  D
Sbjct: 876 CKNEEEAAQIAQIGVLSMIGFPEVELSGWWESIKPSERKVVSYGGWIALEGLPPHLWTND 935

Query: 63  SFRFIGDACGGLLEMARKTLATIDLIEISLKVRSNELVF 102
            F  IGDACGGL+E+ RKT     L+E  ++++ N   F
Sbjct: 936 FFHEIGDACGGLVEIBRKTADFEFLLEAKIRIKQNNTGF 974

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
E5GB30_CUCME1.6e-1846.81Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0KFP0_CUCSA8.1e-1032.58Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367105 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|307135793|gb|ADN33672.1|2.3e-1846.81hypothetical protein [Cucumis melo subsp. melo][more]
gi|659071590|ref|XP_008460776.1|5.1e-1340.45PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me... [more]
gi|700192460|gb|KGN47664.1|1.2e-0932.58hypothetical protein Csa_6G367105 [Cucumis sativus][more]
gi|658031994|ref|XP_008351490.1|6.4e-0836.36PREDICTED: uncharacterized protein LOC103414909 [Malus domestica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G012190.1ClCG05G012190.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G012190Watermelon (97103) v2wcgwmbB229
ClCG05G012190Wax gourdwcgwgoB441
ClCG05G012190Cucumber (Gy14) v1cgywcgB004
ClCG05G012190Cucumber (Gy14) v1cgywcgB005
ClCG05G012190Cucumber (Chinese Long) v2cuwcgB225
ClCG05G012190Cucurbita maxima (Rimu)cmawcgB232
ClCG05G012190Cucurbita maxima (Rimu)cmawcgB234
ClCG05G012190Cucurbita maxima (Rimu)cmawcgB407
ClCG05G012190Cucurbita moschata (Rifu)cmowcgB217
ClCG05G012190Cucurbita moschata (Rifu)cmowcgB220
ClCG05G012190Cucurbita moschata (Rifu)cmowcgB406
ClCG05G012190Wild cucumber (PI 183967)cpiwcgB229
ClCG05G012190Wild cucumber (PI 183967)cpiwcgB241
ClCG05G012190Cucumber (Chinese Long) v2cuwcgB233
ClCG05G012190Melon (DHL92) v3.5.1mewcgB427
ClCG05G012190Melon (DHL92) v3.5.1mewcgB436
ClCG05G012190Watermelon (97103) v1wcgwmB287
ClCG05G012190Cucurbita pepo (Zucchini)cpewcgB518
ClCG05G012190Cucurbita pepo (Zucchini)cpewcgB557
ClCG05G012190Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G012190Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G012190Bottle gourd (USVL1VR-Ls)lsiwcgB339
ClCG05G012190Cucumber (Gy14) v2cgybwcgB207
ClCG05G012190Cucumber (Gy14) v2cgybwcgB217
ClCG05G012190Melon (DHL92) v3.6.1medwcgB423
ClCG05G012190Melon (DHL92) v3.6.1medwcgB426
ClCG05G012190Melon (DHL92) v3.6.1medwcgB427
ClCG05G012190Silver-seed gourdcarwcgB0465
ClCG05G012190Silver-seed gourdcarwcgB0464
ClCG05G012190Silver-seed gourdcarwcgB0739
ClCG05G012190Cucumber (Chinese Long) v3cucwcgB229
ClCG05G012190Cucumber (Chinese Long) v3cucwcgB241