ClCG05G012090 (gene) Watermelon (Charleston Gray)

NameClCG05G012090
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPentatricopeptide repeat (PPR) superfamily protein LENGTH=721
LocationCG_Chr05 : 15183798 .. 15184300 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAAAACTGGAGTTGTGATGGATGAGATTGTAGTAGTTACTGCTCGAAATGCTTGTATAAATTTACAGATCGTTAATGTGGAGAAATTATTTCATAGTCAAAAGTTGTAATTGATTCTTATATTAACCTTCAATTTATTTTTTTTTTCTTTTTTTGTACTAAAAAAATATGGGATATAATGGAGTAAGGGTGACTATTTGATGAAGCCCACTTTCTAGACCATATATCTTGGAACTTTATAATCTCTGGGTAATTAAAATGGGATTCAGTTGAAAATACCAAAGCCTTATTTAGTTCCATGCCCTGAAAGAATATTGTGCTTTGGACTTTTCTTGTATCAGAATATGCCCAACATGACCATTCTTACGAGGCTCGTACACTTTTTCAAGAAATGCATATGAATGGCCTAAAACCGAATGAGACCATATTAGTAAATGTAATATCTCTGTGCGCTGAGCAGGGGAAATGCATTTATTCTTGTATTAGACGAATTTTCTAA

mRNA sequence

ATGCATAAAACTGGAGTTGTGATGGATGAGATTGTAGTAGTTACTGCTCGAAATGCTTGTATAAATTTACAGATCGTTAATGTGGAGAAATTATTTCATAAATATGCCCAACATGACCATTCTTACGAGGCTCGTACACTTTTTCAAGAAATGCATATGAATGGCCTAAAACCGAATGAGACCATATTAGTAAATGTAATATCTCTGTGCGCTGAGCAGGGGAAATGCATTTATTCTTGTATTAGACGAATTTTCTAA

Coding sequence (CDS)

ATGCATAAAACTGGAGTTGTGATGGATGAGATTGTAGTAGTTACTGCTCGAAATGCTTGTATAAATTTACAGATCGTTAATGTGGAGAAATTATTTCATAAATATGCCCAACATGACCATTCTTACGAGGCTCGTACACTTTTTCAAGAAATGCATATGAATGGCCTAAAACCGAATGAGACCATATTAGTAAATGTAATATCTCTGTGCGCTGAGCAGGGGAAATGCATTTATTCTTGTATTAGACGAATTTTCTAA

Protein sequence

MHKTGVVMDEIVVVTARNACINLQIVNVEKLFHKYAQHDHSYEARTLFQEMHMNGLKPNETILVNVISLCAEQGKCIYSCIRRIF
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G012090.1ClCG05G012090.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 31..60
score: 3.

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G012090Cla97C05G093990Watermelon (97103) v2wcgwmbB229
The following gene(s) are paralogous to this gene:

None