ClCG05G011870 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011870
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon gag protein
Location	CG_Chr05 : 14744592 .. 14748217 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATAACCCTATTGGTGATTCCTGGTTAATCACCTTTTACACAATCATTTTTTAATAATTTCAGATTTTTTAAAAATCAATTTTATTAGATTGCTAAACATCATTTTTTTTTATGTAAATTTGATTTTGGCCAAGGAAAAAGTGACTCCCGAACACACCCTAACATTCTATTTTTCCTTTCTTCTACTCCATTAGAAGCAGGAGAATATGAGAAGTACCATGAATCATTCCTAATGATTCAATATATGAATTGAATTCAAATTATTCATATCACCAACCTCTATCACTTCTAATTCTTTCAATTTTTTCTATCGAATTGATTTTCAAATTTGAGAAGAAATTTTTTTAAATTCTCAAAAGCATCACTTTTCTAATAATTTGATATTTCTATCAACACTTTTATGAGGTCCTTTTGTAATCTTAACTTTGTTGCATATTTCACATTTCTCAAAATTATTTTTTAAGTCAAAATTAACCCAAGGCTACTCATTATCCCCACATATTTACTATTTATATGACATAAATGAGCATGCCAAAAATTTAAAGAAGAGAGCTGATAACTTGTAGAAATATCAGTTATTATATTCACTATTTGGAATAATTGTAGTCACTTTAGGCTAAACGCATGATTTTAGCAGTTGAATTGTGTAATATGTATTACCATGCGTTGGCATCATTTACAAAAGAATATACCTGAGAAAATAGGAGCTTTTCTGTTCTTAACGCAAGATTAAGTAAAAAAGAAGCACAAATAACCCAAGTACTAGAGAATAAGCTGCTGCAAGAACAAAAGAAGTGAAAACCCATCCGTCAAGACCATGCGTTGAGAAGAAGAAGCAGATACAAACGCGTGGGCATTAGTTTTCGGTTGTTGTCATGTCAGTGTACGAACAGATTACAGGTTATCAGAACATGGCAGAACCAATGGGTTGACAGTGTGAAAAGTATGCGCAGCAGGGCATGCAAATTAATGTAGTGTCAGATCTTCATGAATTCACTTTTTCGACGCCTATAAATAGCCTAAAGCTTCTGAATTCAAAGGTAGAGAGAAACGAGTTCAAGAGGCGAAAGCTCTGCACAAATTCTCCTTCACCATATCCAGCCTTCATTTCAAGCTCTTTTGTGAGAAGGATTCTGAGAATTTTCAGAGTCATCTCCCAATGAGTGAGAACCTTCATCTTATGCCATTTATGTATCAGATAGCAATCATCTTAAGCCTCCATGAAGCAAGACATTGCCAGTGGCGACTTGACGTCTTCCATTTCTGTTCTTTCTTCATTTCCCTTCTTCTTACTTATGCTTTGTTAATAACATTCGAGAGAATGGTTTATTTACTTAATATAAGTTTGATTAACGATTATCTTCCACTCATTTCCATATTTAATACTCTACACCATGTTTGCTTGTATGTTGAATGAGTTAAAGGTTAGAAGTTAGTTTTTCTTAAGCAATATTAAGTATGTTTATATTGTGATAAATGCATATCATTAGCTTGCATAGATTTGTCGGACAAACAAGTTTAAACAAGCACGACTGTCTAGCTTAAGAGAGTAGATGGTCAATCTATAACATTAATCAAGACTAGATGAGTTTCTGAAATATAGTTCATATTTTGCCAAAACAAACTTACCATGCGTCTTAGAGATAAGATTAGTGTGGCGTTGAAACATCGAAAGATGGATTCTCAAACCCAAAGTTTGTAGGTATGTAAATATACTTAGATATGCTCAAGTAACAACTAGCTGCTGCATTAACTATATTGTATCACATGGTTCCATCATCATTTTCAACACATGTTATCTGATTATAAATGACATTTGACTAACATTCTCTGCGTCTACCTCACCGTGTTAATTGTAGGAAATTGTATTTATTCTTTATGTATAGACTTAGACGCATATACTCCGTGAACATAATACTTGTACAGTCACCGCATAGATTATATATTTAGTCTCAACGCCTAATTTATCACAAATCTCTGCGTTTTACCCTAAACTCACCAGAAAACCTATAGAAGCTTATACTTCGGTTTTTATAGGAAAACTTGCTGATTAATGAACATACTTGAGTAATTCTCGACGCATATTTTGTACTAAAATTATAACACCTAAAATTGGTGACAAGTTTTTGGCGCTGTTGCCGGGGATTTGATTTAATAATTTAGGTTATGAAATTATATCTTGATCTATGTAGGAAATCTCTATCTTGAGCCGTACAGAGCATTTTGCCGAAGACGTATCTAATAGAAATGAAGCCTTCATTCATTTCTAACCCTGAGGTTGAGAGAACTTTTCAGAAACGAAGCAAGGCTCATCAAAGGCGGAGACAATTTTACCGAGAGAAGAAAATAGAAAATCAAGCGAACAACGTCAATTAGCCTTTGAGAACCAACAACAATTGGGCTAACGTTGGGCGAGACAATGAAGTGATGAACAATGCGTTAGCCCAAGCACAACTTCAAGCTCAGATACAAGCTGAACGACCAACTCATCTAATTTTATTGGCGCATGATCGGAATCGTCCAATAAGGGACTATACGTCGTCGATTTTGTATGACTTTTCACCTGGAATAATGCAACCTGCATTCCAGGGTTCGAGGTTCAAGATGTGTCGATTATGCTTCAGATGCTCTAGTCAGGGGGCAGTTTGGGGATCACTTGGTGAAGACCCAGACGCTCACTTGAAAAGCTTCATAGAAATCTGAAACACATTCGTCATTCCGAACATAACTGCTGATGAGATTCAGTTGACGCTGTTCCCATTCTCCCTCAGAGATGAGGCGAGACAGTGGGCCTATTCTTTGGAACCAAGTGAGATTACCACTTGGAACCAAATGATAGAGAAGTTCATGAAGAAATTCTTCCCAGCAATGGAAAATGCTCGAAGAAGAAGAAATATAGTCAACTTCCAGCAGAAAGATAGAGAAACCCTGAGTGATGCTTGGGCTAGATTTAAACGGCTGGTAAGAAACTATCCACATAATGGCTTTCCCGACTGTGTGCAAATGGAAATATTCTACGATGGATTGACCAAAGCATCTCAGACAGCTGCAAATGTTGCTGCAGCTGGAGGATTACTTGATAAAACCTACACTGAGGCTAAAGACATTCTCAACAGAATATCAAGAAATCATGAAGATTGGGAAGACCACGGCTATAGTCGATCAGGCCGACGGCAAAACAATGTGTTGGGAGCATCAAAGAATAACAGTGTTGCTGCATTGTAAGGCCAAGTTGCTGCCATGACTAACCTATTGCAAACCATGACCATAAATTAGTCAAATGCAGGAGGTTGCAGGCAAATAAATGCAATCAATCAGATGAATGCGATGGAATGTGTTGGATACGGGGAGCCGCATGTGTATGAGGTATGCCCACAGAATCCACAATCTGTATGCTTCATATGGAACAACCCGTACTCCAACACCTACAATCCCGGCTGGAGAAACCATCCCAATTTTGCATGGTGTGGTAACAGTCATCCTAAGCAGCAAGGTGCTCCCATGCACAATAGGGGTGAATCATCTAGATTTCACCATAGACATCAGAGGCAAAATCAACCACAATCGCATCTGTCACACCCCATCCCAAACTACCCTCCTATAGCCCATGAGGGAGCATAA

mRNA sequence

ATGAAAATAACCCTATTGGTGATTCCTGAAGAAGAAGCAGATACAAACGCGTGGGCATTAGTTTTCGGTTGTTGTCATGTCAGTGTACGAACAGATTACAGGTTATCAGAACATGGCAGAACCAATGGGTTGACACCTAAAGCTTCTGAATTCAAAGGTAGAGAGAAACGAGTTCAAGAGGCGAAAGCTCTGCACAAATTCTCCTTCACCATATCCAGCCTTCATTTCAAGCTCTTTTGTGAGAAGGATTCTGAGAATTTTCAGAGTCATCTCCCAATGAGTGAGAACCTTCATCTTATGCCATTTATGTATCAGATAGCAATCATCTTAAGCCTCCATGAAGCAAGACATTGCCAGTGGCGACTTGACAGCATTTTGCCGAAGACGTATCTAATAGAAATGAAGCCTTCATTCATTTCTAACCCTGAGCCTTTGAGAACCAACAACAATTGGGCTAACGTTGGGCGAGACAATGAAGTGATGAACAATGCGTTAGCCCAAGCACAACTTCAAGCTCAGATACAAGCTGAACGACCAACTCATCTAATTTTATTGGCGCATGATCGGAATCGTCCAATAAGGGACTATACGTCGTCGATTTTGGTTCGAGGTTCAAGATGTGTCGATTATGCTTCAGATGCTCTAGTCAGGGGGCAGTTTGGGGATCACTTGTTGACGCTGTTCCCATTCTCCCTCAGAGATGAGGCGAGACAGTGGGCCTATTCTTTGGAACCAAGTGAGATTACCACTTGGAACCAAATGATAGAGAAGTTCATGAAGAAATTCTTCCCAGCAATGGAAAATGCTCGAAGAAGAAGAAATATAGTCAACTTCCAGCAGAAAGATAGAGAAACCCTGAGTGATGCTTGGGCTAGATTTAAACGGCTGGTAAGAAACTATCCACATAATGGCTTTCCCGACTGTGTGCAAATGGAAATATTCTACGATGGATTGACCAAAGCATCTCAGACAGCTGCAAATGTTGCTGCAGCTGGAGGATTACTTGATAAAACCTACACTGAGGCTAAAGACATTCTCAACAGAATATCAAGAAATCATGAAGATTGGGAAGACCACGGCTATAGTCGATCAGGCCGACGGCAAAACAATGTGTTGGGAGCATCAAAGAATAACAGTGTTGCTGCATTGCAAATAAATGCAATCAATCAGATGAATGCGATGGAATGTGTTGGATACGGGGAGCCGCATGTGTATGAGGTATGCCCACAGAATCCACAATCTGTATGCTTCATATGGAACAACCCGTACTCCAACACCTACAATCCCGGCTGGAGAAACCATCCCAATTTTGCATGGTGTGGTAACAGTCATCCTAAGCAGCAAGGTGCTCCCATGCACAATAGGGGTGAATCATCTAGATTTCACCATAGACATCAGAGGCAAAATCAACCACAATCGCATCTGTCACACCCCATCCCAAACTACCCTCCTATAGCCCATGAGGGAGCATAA

Coding sequence (CDS)

ATGAAAATAACCCTATTGGTGATTCCTGAAGAAGAAGCAGATACAAACGCGTGGGCATTAGTTTTCGGTTGTTGTCATGTCAGTGTACGAACAGATTACAGGTTATCAGAACATGGCAGAACCAATGGGTTGACACCTAAAGCTTCTGAATTCAAAGGTAGAGAGAAACGAGTTCAAGAGGCGAAAGCTCTGCACAAATTCTCCTTCACCATATCCAGCCTTCATTTCAAGCTCTTTTGTGAGAAGGATTCTGAGAATTTTCAGAGTCATCTCCCAATGAGTGAGAACCTTCATCTTATGCCATTTATGTATCAGATAGCAATCATCTTAAGCCTCCATGAAGCAAGACATTGCCAGTGGCGACTTGACAGCATTTTGCCGAAGACGTATCTAATAGAAATGAAGCCTTCATTCATTTCTAACCCTGAGCCTTTGAGAACCAACAACAATTGGGCTAACGTTGGGCGAGACAATGAAGTGATGAACAATGCGTTAGCCCAAGCACAACTTCAAGCTCAGATACAAGCTGAACGACCAACTCATCTAATTTTATTGGCGCATGATCGGAATCGTCCAATAAGGGACTATACGTCGTCGATTTTGGTTCGAGGTTCAAGATGTGTCGATTATGCTTCAGATGCTCTAGTCAGGGGGCAGTTTGGGGATCACTTGTTGACGCTGTTCCCATTCTCCCTCAGAGATGAGGCGAGACAGTGGGCCTATTCTTTGGAACCAAGTGAGATTACCACTTGGAACCAAATGATAGAGAAGTTCATGAAGAAATTCTTCCCAGCAATGGAAAATGCTCGAAGAAGAAGAAATATAGTCAACTTCCAGCAGAAAGATAGAGAAACCCTGAGTGATGCTTGGGCTAGATTTAAACGGCTGGTAAGAAACTATCCACATAATGGCTTTCCCGACTGTGTGCAAATGGAAATATTCTACGATGGATTGACCAAAGCATCTCAGACAGCTGCAAATGTTGCTGCAGCTGGAGGATTACTTGATAAAACCTACACTGAGGCTAAAGACATTCTCAACAGAATATCAAGAAATCATGAAGATTGGGAAGACCACGGCTATAGTCGATCAGGCCGACGGCAAAACAATGTGTTGGGAGCATCAAAGAATAACAGTGTTGCTGCATTGCAAATAAATGCAATCAATCAGATGAATGCGATGGAATGTGTTGGATACGGGGAGCCGCATGTGTATGAGGTATGCCCACAGAATCCACAATCTGTATGCTTCATATGGAACAACCCGTACTCCAACACCTACAATCCCGGCTGGAGAAACCATCCCAATTTTGCATGGTGTGGTAACAGTCATCCTAAGCAGCAAGGTGCTCCCATGCACAATAGGGGTGAATCATCTAGATTTCACCATAGACATCAGAGGCAAAATCAACCACAATCGCATCTGTCACACCCCATCCCAAACTACCCTCCTATAGCCCATGAGGGAGCATAA

Protein sequence

MKITLLVIPEEEADTNAWALVFGCCHVSVRTDYRLSEHGRTNGLTPKASEFKGREKRVQEAKALHKFSFTISSLHFKLFCEKDSENFQSHLPMSENLHLMPFMYQIAIILSLHEARHCQWRLDSILPKTYLIEMKPSFISNPEPLRTNNNWANVGRDNEVMNNALAQAQLQAQIQAERPTHLILLAHDRNRPIRDYTSSILVRGSRCVDYASDALVRGQFGDHLLTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRETLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKDILNRISRNHEDWEDHGYSRSGRRQNNVLGASKNNSVAALQINAINQMNAMECVGYGEPHVYEVCPQNPQSVCFIWNNPYSNTYNPGWRNHPNFAWCGNSHPKQQGAPMHNRGESSRFHHRHQRQNQPQSHLSHPIPNYPPIAHEGA

Homology

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BLAST of ClCG05G011870 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 101/278 (36.33%), Postives = 136/278 (48.92%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L LFPFSLRD AR W  +L P  +T WN + EKF++K+FP   NA+ R  I++FQQ + E
Sbjct: 98  LKLFPFSLRDRARSWLNTLPPDSVTNWNDLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDE 157

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           + SDAW RFK L+R  PH+G P C+QME FY+GL  AS+   + +A G +L K+Y EA +
Sbjct: 158 STSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAILSKSYNEAFE 217

Query: 345 ILNRISRNHEDWEDHGYSRSGR------------------RQNNVLGASKNNSVAALQIN 404
           IL  I+ N+  W +     S +                     NVL      +   +Q  
Sbjct: 218 ILETIASNNYQWSNTRAPTSRKVAGVLEVDAITALTAQMASMTNVLKNLSIGNAKNIQPA 277

Query: 405 AINQMNAMECVGYGEPHVYEVCPQNPQSVCFIWNNPYSNTYNPGWR---NHPNFAWCGNS 464
           A  Q + + CV  GE HV+E CP NP+SVC++ N   + T          H         
Sbjct: 278 AAIQSDDVSCVFCGEGHVFEKCPSNPESVCYMGNQNLTETMGHSQTLTIKHGRIILICLG 337

Query: 465 HPKQQGAPMHNRGESSRFHHRHQRQNQPQSHLSHPIPN 482
             K+Q    H   E    H      N P  H    IPN
Sbjct: 338 GVKEQAQAPHQPKEDKHIHRVF--HNNPDIHNMLKIPN 373

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BLAST of ClCG05G011870 vs. TrEMBL
Match: Q2AA09_ASPOF (Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-33
Identity = 94/242 (38.84%), Postives = 134/242 (55.37%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L LFPFSLRD+AR W  SL P  ITTW+Q+ E F+ K+FP  + A+ R  I  F QK+ E
Sbjct: 11  LRLFPFSLRDKARAWLQSLPPGSITTWDQLSEAFLAKYFPPSKTAQLRNQITTFTQKEGE 70

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           +L DAW R+K L+R  PH+G  D + +  FY+GL   ++   + AA G L++K+  +AK 
Sbjct: 71  SLYDAWERYKDLLRMCPHHGLEDWLIIHTFYNGLLYNTRMTVDAAAGGALMNKSVRDAKQ 130

Query: 345 ILNRISRNHEDW--EDHGYSRSGRRQNNVLG--ASK------------NNSVAA----LQ 404
           ++  +++NH  W  E     +SGR   + L   AS+             NSVA+     +
Sbjct: 131 LIEDMAQNHFQWSGERSLPKKSGRYDVDALDHIASRVDALFQKFDKMSMNSVASNSTNCE 190

Query: 405 INAINQMNAMECVGYGEPHVYEVCPQNPQS--VCFIWN-----NPYSNTYNPGWRNHPNF 440
           I  I   +A+EC     P      P  P S  V ++ N     +P+SNTYNPGWRNHPN 
Sbjct: 191 ICGIIGHSAVECQIGNSP-----SPDAPLSEHVNYMNNFNQKGDPFSNTYNPGWRNHPNL 247

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BLAST of ClCG05G011870 vs. TrEMBL
Match: W9RRR5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.2e-33
Identity = 83/220 (37.73%), Postives = 115/220 (52.27%), Query Frame = 1


Query: 254 MIEKFMKKFFPAMENARRRRNIVNFQQKDRETLSDAWARFKRLVRNYPHNGFPDCVQMEI 313
           M EKF+ K+FP  +NA+ R +I +F Q+D E++  AW RFK L+R  P +G P  +QME 
Sbjct: 1   MAEKFLLKYFPPTKNAKLRNDITSFHQEDGESVYAAWERFKELLRKCPLHGIPHWIQMET 60

Query: 314 FYDGLTKASQTAANVAAAGGLLDKTYTEAKDILNRISRNHEDWEDHGYSRSGRRQNNVLG 373
           FY+GL + ++   + AA G LL K+Y E  +IL R++ NH  W         R+   VL 
Sbjct: 61  FYNGLNEQTRVMVDAAANGALLAKSYNEGYEILERMATNHYQWSPERLPT--RKTPGVLE 120

Query: 374 ASKNNSVAALQINAINQMNAM--------------ECVGYGEPHVYEVCPQNPQSVCFI- 433
                +++A   N  N    M               CV  GE H ++ CP NP S  ++ 
Sbjct: 121 VDAITALSAQVSNLTNMFKTMNTSTGVNSVQALTLSCVYCGEGHQFKECPSNPASAYYVS 180

Query: 434 ---WNNPYSNTYNPGWRNHPNFAWCGNSHPKQQGAPMHNR 456
               NN YS+ YN GWR HPNF+W  N      GAP +NR
Sbjct: 181 NYNRNNAYSHQYNQGWRQHPNFSW-SNQGAGSSGAPPYNR 217

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BLAST of ClCG05G011870 vs. TrEMBL
Match: A5AZ88_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 7.2e-32
Identity = 83/242 (34.30%), Postives = 131/242 (54.13%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L LFPFSL ++A+ W  SL P  ITTW+ ++  F+ K+FP  ++ + R +I NF Q+D+E
Sbjct: 34  LRLFPFSLNNKAKAWLISLPPGTITTWDGLVNAFLAKYFPLAKSTKMRNDITNFLQQDQE 93

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           +L +AW RFK L+R  PH+G P  +Q ++FY+ L   +QT  + A+ G  ++KT  E   
Sbjct: 94  SLYEAWERFKDLLRKCPHHGLPIWMQAQMFYNSLHPNTQTMVDAASGGAFINKTPDEGYQ 153

Query: 345 ILNRISRNH--EDWEDHGYSRS-GRRQNNVLG------ASKNNSVAALQINAINQMNAME 404
           ++  ++ N+  +  + +   R+ G    +V        A  NN+   L +  ++ +    
Sbjct: 154 LIKVMASNNFLKSTDRNAQKRTVGVHDIDVFNNLATQVAILNNNFKKLNVVVVSNLVCEN 213

Query: 405 CVG--------YGEPHVYEVCPQNPQSVCFIWN-----NPYSNTYNPGWRNHPNFAWCGN 445
           C G         G P  YE  P   + V ++ N     NP SN +N GWRNHPNF+W  N
Sbjct: 214 CAGNHPSLECQVGGP--YEANPS--KQVNYVANNQRQYNPNSNYFNQGWRNHPNFSWSNN 271

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BLAST of ClCG05G011870 vs. TrEMBL
Match: Q2AA50_ASPOF (Retrotransposon gag protein OS=Asparagus officinalis GN=19.t00014 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 7.9e-31
Identity = 97/303 (32.01%), Postives = 139/303 (45.87%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L   PF+L+D+A++W YSL  + I+TW + +  F+KKFFP  +  + R +I NF+    E
Sbjct: 11  LRFIPFALKDKAKKWLYSLPTNSISTWEEFVTVFLKKFFPIHKTVKLRNSIQNFKIVPGE 70

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
                + RFK L+   PH+G       ++ Y+GL  +S+T+      G  + K   EA +
Sbjct: 71  PFWKYFDRFKDLLIQCPHHGLEKWRLCQVIYEGLDYSSKTSLESMCQGDFMRKNADEAWE 130

Query: 345 ILNRISRNHEDWEDHGYSRSGRRQNNVLGASKNNSVA-------------ALQIN----- 404
            L  +S     WE+     S   Q+   G S  +++A             AL++      
Sbjct: 131 FLESLSEKTMQWENCDDRVSSVSQSKSSGLSLESNIASEAKMATILRRLEALEVKERAPA 190

Query: 405 AINQMNAMECVGYGEP-HVYEVCP---------------QNPQSVCFIWNNPYSNTYNPG 464
            IN ++A  C     P HV E CP               Q P+      N+P+S TYNPG
Sbjct: 191 QINHISAPGCHNCQSPTHVSEECPLLGNNHALEQMNAAFQRPR------NDPFSPTYNPG 250

Query: 465 WRNHPNFAW-CGNSHPKQQGAPMHN----RGESSRFHHRHQRQNQPQSHLSHPIPNYPPI 489
           WRNHPNFAW  GNSH  Q   P  N    RG +  F       N P +  + P PN  P 
Sbjct: 251 WRNHPNFAWNQGNSHGNQNFIPASNQQFPRGNTVPF-------NAPNNFSNPPFPNQHPH 300

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BLAST of ClCG05G011870 vs. NCBI nr
Match: gi|985457975|ref|XP_015387726.1| (PREDICTED: uncharacterized protein LOC107177802 [Citrus sinensis])

HSP 1 Score: 200.7 bits (509), Expect = 6.0e-48
Identity = 111/288 (38.54%), Postives = 156/288 (54.17%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L LFPFSLRD AR W  SL P  ITTWN +  KF+ K+FP  +NA+ R  I +F Q + E
Sbjct: 125 LRLFPFSLRDRARAWLKSLPPDSITTWNDLANKFLMKYFPPTKNAKLRNEITSFHQLEDE 184

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           +L DAW  FK L+R  P  G P C+Q+E  Y+GL ++++   + +A G LL K+Y EA +
Sbjct: 185 SLCDAWEGFKELLRRCPQYGIPCCIQLETLYNGLNQSTRLMVDASANGALLSKSYNEAYE 244

Query: 345 ILNRISRNHEDWEDHGYSRSGRRQNNVLGASKNNSVAAL-----QINA------------ 404
           +L RIS+N+       Y     RQ    G +  ++V AL     Q+ +            
Sbjct: 245 MLERISKNN-------YQCPSTRQAAARGIAGVHNVDALTALSAQVTSLTKMVKAMTTAP 304

Query: 405 --INQMNAMECVGYGEPHVYEVCPQNPQSVCFI-------WNNPYSNTYNPGWRNHPNFA 464
             +NQ+  M CV  GE H+++ CP NP SV ++        +NPYSNTYNPGWR HPNF+
Sbjct: 305 ATVNQIYDMSCVYCGEGHLFDNCPGNPTSVNYVGSFNRQNQDNPYSNTYNPGWRQHPNFS 364

Query: 465 WCGNSHPKQQGAPMHNRGESSRFHHRHQRQ----NQPQSHLSHPIPNY 483
           W   + P    +  +   + S F+ ++Q Q    N   S L   I +Y
Sbjct: 365 WSNQNQPAAAFSGQNRLAQPSGFYQQNQEQRSINNDQLSSLEGLIKDY 405

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BLAST of ClCG05G011870 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 177.9 bits (450), Expect = 4.2e-41
Identity = 101/278 (36.33%), Postives = 136/278 (48.92%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L LFPFSLRD AR W  +L P  +T WN + EKF++K+FP   NA+ R  I++FQQ + E
Sbjct: 98  LKLFPFSLRDRARSWLNTLPPDSVTNWNDLAEKFLRKYFPPTRNAKFRSEIMSFQQLEDE 157

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           + SDAW RFK L+R  PH+G P C+QME FY+GL  AS+   + +A G +L K+Y EA +
Sbjct: 158 STSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAILSKSYNEAFE 217

Query: 345 ILNRISRNHEDWEDHGYSRSGR------------------RQNNVLGASKNNSVAALQIN 404
           IL  I+ N+  W +     S +                     NVL      +   +Q  
Sbjct: 218 ILETIASNNYQWSNTRAPTSRKVAGVLEVDAITALTAQMASMTNVLKNLSIGNAKNIQPA 277

Query: 405 AINQMNAMECVGYGEPHVYEVCPQNPQSVCFIWNNPYSNTYNPGWR---NHPNFAWCGNS 464
           A  Q + + CV  GE HV+E CP NP+SVC++ N   + T          H         
Sbjct: 278 AAIQSDDVSCVFCGEGHVFEKCPSNPESVCYMGNQNLTETMGHSQTLTIKHGRIILICLG 337

Query: 465 HPKQQGAPMHNRGESSRFHHRHQRQNQPQSHLSHPIPN 482
             K+Q    H   E    H      N P  H    IPN
Sbjct: 338 GVKEQAQAPHQPKEDKHIHRVF--HNNPDIHNMLKIPN 373

[Close]

BLAST of ClCG05G011870 vs. NCBI nr
Match: gi|985428736|ref|XP_015382752.1| (PREDICTED: uncharacterized protein LOC107175648 [Citrus sinensis])

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 105/276 (38.04%), Postives = 150/276 (54.35%), Query Frame = 1


Query: 212 SDAL-VRGQFGDHL-LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENA 271
           SDA  + G   D L L LFP+SLRD AR W  SL    IT WN++ +KF+ K+F   +NA
Sbjct: 69  SDAFKIAGATQDALRLRLFPYSLRDRARAWLNSLPSDFITIWNELADKFLMKYFLPTKNA 128

Query: 272 RRRRNIVNFQQKDRETLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVA 331
           +    I +F Q + E L +AW  FK L+R  PH+G P C+Q+E FY+ L  +++   + +
Sbjct: 129 KLHNEITSFHQLEDENLYEAWEIFKELLRRCPHHGIPCCIQLETFYNRLNLSTRLMVDAS 188

Query: 332 AAGGLLDKTYTEAKDILNRISRNHEDWED--HGYSRSGRRQNNV-----LGA---SKNNS 391
             G LL K+YTEA +IL RI++N+  W       +R     +N+     L A   S  N 
Sbjct: 189 DCGALLSKSYTEAYEILERIAKNNYQWSSTRQPVARGAVGVHNIDAITDLSAQVTSLTNM 248

Query: 392 VAALQI--NAINQMNAMECVGYGEPHVYEVCPQNPQSVCFI-------WNNPYSNTYNPG 451
           V A+      + Q+  + CV  GE H ++ CP NP SV ++        NNPYSNTYNPG
Sbjct: 249 VKAMTSAPAVVKQVAELSCVYCGEEHEFDNCPGNPVSVNYMGNYNRQPQNNPYSNTYNPG 308

Query: 452 WRNHPNFAWCGNSHPKQQGAPMHNRGESSRFHHRHQ 467
           W+ HPNF+    S+  Q    +  R  +++    HQ
Sbjct: 309 WKQHPNFSL---SNQNQNAPALSGRNRNTQPPGFHQ 341

[Close]

BLAST of ClCG05G011870 vs. NCBI nr
Match: gi|698548016|ref|XP_009768198.1| (PREDICTED: uncharacterized protein LOC104219248 [Nicotiana sylvestris])

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 95/274 (34.67%), Postives = 144/274 (52.55%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           LTLFPFSL  EA++W      + ITTWN +  KF+ +FFP+ +  + R  IV F+QK  E
Sbjct: 45  LTLFPFSLLGEAKRWLKVEPTNSITTWNDLARKFLARFFPSGKTTKIRSEIVAFKQKAGE 104

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           +L  AW RFKRL+R+ PH+   + V    F +GL   ++   +  A G +L+K++ E   
Sbjct: 105 SLYSAWERFKRLLRDCPHHNQTNEVLSHTFIEGLHSETKIVVDATAGGQVLEKSFDEIYA 164

Query: 345 ILNRISRNHEDWEDHGYSRSGRRQNNVLGASKNNSVAALQINAINQMNAME--------- 404
           +LN+ S+++ DW+      + ++   VL     ++++A      NQ+N M          
Sbjct: 165 LLNKFSKSNLDWQGEMGRHTVQKSPGVLELDVVSALSAQVSTLTNQVNQMTMIINKQQAQ 224

Query: 405 --------CVGYGEPHVYEVCPQNPQSVCFIWN------NPYSNTYNPGWRNHPNFAWCG 464
                   C   GE H+  +CP NP+ V F+ N      N Y +TYNP WRNHPNF+W G
Sbjct: 225 PVQQVQIFCEVCGEGHMSNLCPVNPEFVYFVGNANRGQTNQYGDTYNPNWRNHPNFSWGG 284

Query: 465 NSHPKQQGAPMHNRGESSRFHHRHQRQNQPQSHL 476
           N  P+ Q  P   + +      + ++Q  P SHL
Sbjct: 285 NQGPQNQYRPQIPQQQYR--PPQVEQQVSPTSHL 316

[Close]

BLAST of ClCG05G011870 vs. NCBI nr
Match: gi|985462030|ref|XP_015388606.1| (PREDICTED: uncharacterized protein LOC107178232 [Citrus sinensis])

HSP 1 Score: 168.7 bits (426), Expect = 2.5e-38
Identity = 95/246 (38.62%), Postives = 137/246 (55.69%), Query Frame = 1


Query: 225 LTLFPFSLRDEARQWAYSLEPSEITTWNQMIEKFMKKFFPAMENARRRRNIVNFQQKDRE 284
           L LF +SLRD AR W  SL P  IT  N + +KF+  +F  ++NA+ R  IV+F Q + E
Sbjct: 112 LRLFSYSLRDRARTWLNSLPPDSITAQNDLPDKFLMTYFSPIKNAKLRNEIVSFHQLEDE 171

Query: 285 TLSDAWARFKRLVRNYPHNGFPDCVQMEIFYDGLTKASQTAANVAAAGGLLDKTYTEAKD 344
           +L +AW RF  L+R  PH G P  +QM+IFYDGL  +++   + +A   LL K+Y EA +
Sbjct: 172 SLYNAWERFNELLRRCPHQGIPCYIQMKIFYDGLNLSTRLMVDASANKALLFKSYNEAYE 231

Query: 345 ILNRISRNHEDWEDHGYSRSGRRQNNVLGA------SKNNSVAALQI--NAINQMNAMEC 404
           IL RI+ N+        + +     N   A      S  N V A+     ++N++  + C
Sbjct: 232 ILERIANNNYQCPSTRQAAARVHNMNAFTALLAQVISLTNMVKAMTTAPASVNRVAKVSC 291

Query: 405 VGYGEPHVYEVCPQNPQSVCFIWN-------NPYSNTYNPGWRNHPNFAWCGNSHPKQQG 456
           V  G  ++++ CP NP SV ++ N       NPYSNTYNP WR+HPNF+W  N +     
Sbjct: 292 VYCGVGYLFDNCPGNPTSVNYMGNFNRQNQSNPYSNTYNPIWRHHPNFSW-SNQNQLAAV 351

The following BLAST results are available for this feature:

BLAST of ClCG05G011870 vs. TrEMBL


Match Name	E-value	Identity	Description
U5CUI2_AMBTC	2.9e-41	36.33	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=...	[more]
Q2AA09_ASPOF	2.2e-33	38.84	Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1	[more]
W9RRR5_9ROSA	2.2e-33	37.73	Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1	[more]
A5AZ88_VITVI	7.2e-32	34.30	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037041 PE=4 SV=1	[more]
Q2AA50_ASPOF	7.9e-31	32.01	Retrotransposon gag protein OS=Asparagus officinalis GN=19.t00014 PE=4 SV=1	[more]

BLAST of ClCG05G011870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|985457975\|ref\|XP_015387726.1\|	6.0e-48	38.54	PREDICTED: uncharacterized protein LOC107177802 [Citrus sinensis]	[more]
gi\|548830333\|gb\|ERM93404.1\|	4.2e-41	36.33	hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]	[more]
gi\|985428736\|ref\|XP_015382752.1\|	1.6e-40	38.04	PREDICTED: uncharacterized protein LOC107175648 [Citrus sinensis]	[more]
gi\|698548016\|ref\|XP_009768198.1\|	2.5e-38	34.67	PREDICTED: uncharacterized protein LOC104219248 [Nicotiana sylvestris]	[more]
gi\|985462030\|ref\|XP_015388606.1\|	2.5e-38	38.62	PREDICTED: uncharacterized protein LOC107178232 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005162	Retrotrans_gag_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011870.1	ClCG05G011870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 227..319 score: 2.7
None	No IPR available	PANTHER	PTHR33067	FAMILY NOT NAMED	coord: 227..352 score: 8.2
None	No IPR available	PANTHER	PTHR33067:SF1	SUBFAMILY NOT NAMED	coord: 227..352 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G011870	Cucumber (Gy14) v1	cgywcgB004
ClCG05G011870	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G011870	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G011870	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G011870	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G011870	Wild cucumber (PI 183967)	cpiwcgB241
ClCG05G011870	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G011870	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G011870	Watermelon (97103) v1	wcgwmB287
ClCG05G011870	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G011870	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G011870	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G011870	Cucumber (Gy14) v2	cgybwcgB217
ClCG05G011870	Melon (DHL92) v3.6.1	medwcgB423
ClCG05G011870	Melon (DHL92) v3.6.1	medwcgB427
ClCG05G011870	Silver-seed gourd	carwcgB0464
ClCG05G011870	Silver-seed gourd	carwcgB0739
ClCG05G011870	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G011870	Watermelon (97103) v2	wcgwmbB229
ClCG05G011870	Wax gourd	wcgwgoB441