ClCG05G011820 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACAACTCCTAAGGAAAAAGGTGGAATGAGTTTTTGTGATTTTCCTTTGTTTAATCAAGTGTTGTTGCCCAAGCATACATGGCGTAGTTTAAATCGCGACCAATCTTTGGTGACTCAAATTTTGAAGGCAAGGTACTTTCCTAATTCCCATTTCTTGCTTGTAGGATTGGGAGATCTGTCCCTTGTAGACTTGGCTTAACATTTTGTGGGGTAGAGACCTTGCCGTAAAAGGTGGCAGGTAGAAAGTTGGTGATGACCAATCAATCAATATTTACCATGATCAATGGATTCCTAGAGAGACCACCTTCAAGCCTCTTTCTTCTTCTCAATCTTTGAGTTATCCTTTTGCTAGTGGTTTGATTGCAAATGATGAATGGAATTTGAGTTTAATGGACAAGTTGCAAATGGTGATGCCTGAATCATCAAGCAGATTCCTCTTTATAATTCACCTGGTCCTAACGCCTTCTTCTAACACTATGATAAGAAAGGTATATATTTGGTTAAAAGTGGTTACAAGTTTGCTCAAGTGACTACTATTACTACGTCCTCCTCATCCCTTATGATGAGTAAGATGTGGAAGATGTTGTGGTCTTTGGAAATTCCACCAAAGTCAAAAAATTTCCTTTTAGAGGGTTTGTCTCAACACTTTTCCCACATGTGAGGTTCTTGTAGGTCGTCAGACGTTACATGATAGAAAGTGTCCTTTGTGTCAGCGAGTTTCTAAATCTAACATTCATGCTCTATGGTTTTGTAAGGGAAGTCCAAACATTTGGTCTTCTTGGATCCCTAGTTTGCTTCTTTTTTATATTCACTACTCTAATTATGCTTCTCTTTTTTGTAGGGCAATCAAGATTCTCTGTTCCAGGAACTTAGGATCTTTTCCCTTATCACGTCCTCAATTTGACACGAGCGTAACTTGTTGGTATTTGATAGCAAGCCTTCCAACTCCTTGGATCCAGTTGGTTGGACATTATCTATGGTTGATTCTTTTGATAGTTGGTCAAGATCTTTACTCATGGGTTTGGATGCGATGGATCCTTCTACCGTTGGGGATGATAAATGGAGGACCCCTCCTCCAGAAATTTTCAAGGTGAATTATGATGCAACTATTGGAAGCGAGGAGGTGGGCATTGAACTGTTATTAGTGATTCCAATGGCGAGACCCTGTTGGTTATGGAAGATCCAACCTTTCATTGGTTTAGTGGAGCTTCCTGAGGCTATTGCCCTCTATGAAGGCATGTCTAAGGCTTTGGAAGCTAGTATTTACCCTCTAAGGGCTGAGATTGATTCTTTGATTCCGTGGGGCCTTCTGATGAACTCATCTCAATATTCTAATGATATTCAGTATTTTGTGGATTCTTTACGTGCTTTACATCATTATGGAGCTATTTAAGGCTTCTATTTTGCTTAGTATAATTGCAATATTGTGGCTCACGAGCTTGTGTCTCACGCATGAAGATCTCGAATGTCGTCGATTTGGCTTGAAGATCATCCCCCTTGGGTGGTCTCTTTTTTAA ATGACAACTCCTAAGGAAAAAGGTGGAATGAGTTTTTGTGATTTTCCTTTGTTTAATCAAGTGTTGTTGCCCAAGCATACATGGCGTAGTTTAAATCGCGACCAATCTTTGGTGACTCAAATTTTGAAGGCAAGGTACTTTCCTAATTCCCATTTCTTGCTTACTTGGCTTAACATTTTGTGGGGTAGAGACCTTGCCGTAAAAGGTGGCAGAGAGACCACCTTCAAGCCTCTTTCTTCTTCTCAATCTTTGAGTTATCCTTTTGCTAGTGGTTTGATTGCAAATGATGAATGGAATTTGAGTTTAATGGACAAGTTGCAAATGGTGATGCCTGAATCATCAAGCAGATTCCTCTTTATAATTCACCTGGTCCTAACGCCTTCTTCTAACACTATGATAAGAAAGCGTAACTTGTTGGTATTTGATAGCAAGCCTTCCAACTCCTTGGATCCAGTTGGTTGGACATTATCTATGGTTGATTCTTTTGATAGTTGGTCAAGATCTTTACTCATGGGTTTGGATGCGATGGATCCTTCTACCGTTGGGGATGATAAATGGAGGACCCCTCCTCCAGAAATTTTCAAGGTGAATTATGATGCAACTATTGGAAGCGAGGAGGTGGGCATTGAACTGTTATTAGTGATTCCAATGGCGAGACCCTGTTGGTTATGGAAGATCCAACCTTTCATTGGTTTAGTGGAGCTTCCTGAGGCTATTGCCCTCTATGAAGGCATGTCTAAGGCTTTGGAAGCTAGTATTTACCCTCTAAGGGCTGAGATTGATTCTTTGATTCCGTGGGGCCTTCTGATGAACTCATCTCAATATTCTAATGATATTCAGTATTTTGTGGATTCTTTACATCTCGAATGTCGTCGATTTGGCTTGAAGATCATCCCCCTTGGGTGGTCTCTTTTTTAA ATGACAACTCCTAAGGAAAAAGGTGGAATGAGTTTTTGTGATTTTCCTTTGTTTAATCAAGTGTTGTTGCCCAAGCATACATGGCGTAGTTTAAATCGCGACCAATCTTTGGTGACTCAAATTTTGAAGGCAAGGTACTTTCCTAATTCCCATTTCTTGCTTACTTGGCTTAACATTTTGTGGGGTAGAGACCTTGCCGTAAAAGGTGGCAGAGAGACCACCTTCAAGCCTCTTTCTTCTTCTCAATCTTTGAGTTATCCTTTTGCTAGTGGTTTGATTGCAAATGATGAATGGAATTTGAGTTTAATGGACAAGTTGCAAATGGTGATGCCTGAATCATCAAGCAGATTCCTCTTTATAATTCACCTGGTCCTAACGCCTTCTTCTAACACTATGATAAGAAAGCGTAACTTGTTGGTATTTGATAGCAAGCCTTCCAACTCCTTGGATCCAGTTGGTTGGACATTATCTATGGTTGATTCTTTTGATAGTTGGTCAAGATCTTTACTCATGGGTTTGGATGCGATGGATCCTTCTACCGTTGGGGATGATAAATGGAGGACCCCTCCTCCAGAAATTTTCAAGGTGAATTATGATGCAACTATTGGAAGCGAGGAGGTGGGCATTGAACTGTTATTAGTGATTCCAATGGCGAGACCCTGTTGGTTATGGAAGATCCAACCTTTCATTGGTTTAGTGGAGCTTCCTGAGGCTATTGCCCTCTATGAAGGCATGTCTAAGGCTTTGGAAGCTAGTATTTACCCTCTAAGGGCTGAGATTGATTCTTTGATTCCGTGGGGCCTTCTGATGAACTCATCTCAATATTCTAATGATATTCAGTATTTTGTGGATTCTTTACATCTCGAATGTCGTCGATTTGGCTTGAAGATCATCCCCCTTGGGTGGTCTCTTTTTTAA MTTPKEKGGMSFCDFPLFNQVLLPKHTWRSLNRDQSLVTQILKARYFPNSHFLLTWLNILWGRDLAVKGGRETTFKPLSSSQSLSYPFASGLIANDEWNLSLMDKLQMVMPESSSRFLFIIHLVLTPSSNTMIRKRNLLVFDSKPSNSLDPVGWTLSMVDSFDSWSRSLLMGLDAMDPSTVGDDKWRTPPPEIFKVNYDATIGSEEVGIELLLVIPMARPCWLWKIQPFIGLVELPEAIALYEGMSKALEASIYPLRAEIDSLIPWGLLMNSSQYSNDIQYFVDSLHLECRRFGLKIIPLGWSLF
BLAST of ClCG05G011820 vs. TrEMBL
Match: J3L042_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 5.3e-09 Identity = 37/80 (46.25%), Postives = 47/80 (58.75%), Query Frame = 1
BLAST of ClCG05G011820 vs. TrEMBL
Match: Q9FW98_ORYSJ (Putative non-LTR retroelement reverse transcriptase OS=Oryza sativa subsp. japonica GN=OSJNBa0026L12.31 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
BLAST of ClCG05G011820 vs. TrEMBL
Match: Q7XCU0_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os10g37170 PE=4 SV=2) HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 1
BLAST of ClCG05G011820 vs. TrEMBL
Match: B8AVA6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14862 PE=4 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 9.1e-09 Identity = 38/80 (47.50%), Postives = 45/80 (56.25%), Query Frame = 1
BLAST of ClCG05G011820 vs. TrEMBL
Match: A3AR26_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_13823 PE=4 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08 Identity = 38/80 (47.50%), Postives = 45/80 (56.25%), Query Frame = 1
BLAST of ClCG05G011820 vs. NCBI nr
Match: gi|685317536|ref|XP_009149313.1| (PREDICTED: uncharacterized protein LOC103872633 [Brassica rapa]) HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10 Identity = 44/115 (38.26%), Postives = 59/115 (51.30%), Query Frame = 1
BLAST of ClCG05G011820 vs. NCBI nr
Match: gi|985434686|ref|XP_015382715.1| (PREDICTED: uncharacterized protein LOC107175626 [Citrus sinensis]) HSP 1 Score: 73.9 bits (180), Expect = 5.3e-10 Identity = 73/310 (23.55%), Postives = 129/310 (41.61%), Query Frame = 1
BLAST of ClCG05G011820 vs. NCBI nr
Match: gi|923822726|ref|XP_013694835.1| (PREDICTED: uncharacterized protein LOC106398878 [Brassica napus]) HSP 1 Score: 72.4 bits (176), Expect = 1.5e-09 Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 1
BLAST of ClCG05G011820 vs. NCBI nr
Match: gi|923682615|ref|XP_013654036.1| (PREDICTED: uncharacterized protein LOC106358780 [Brassica napus]) HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09 Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 1
BLAST of ClCG05G011820 vs. NCBI nr
Match: gi|923616930|ref|XP_013746214.1| (PREDICTED: uncharacterized protein LOC106448947 [Brassica napus]) HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09 Identity = 77/329 (23.40%), Postives = 138/329 (41.95%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |