ClCG05G011780 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G011780
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-directed DNA polymerase (Reverse transcriptase)
LocationCG_Chr05 : 14471427 .. 14472614 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTTACTTGCACAAATCTTGTATAGCTGGTGTTTATGTTGGAGACGATCTTATTCAACAAGCTGAAGCCATTTGGGGCTATCACTCCTCACAACTTCCCATCAATTACCTTGATATGCCGCTTGAGGGTAACATGAAAAACATTACTTTTTGGTCCCCTACACTTGAGAATATGGAGAGAAAGCTCGACTCCTGGAAATTTGCATACATTTCAAAGGGAGGTAGACTCACATTAATACAAGCGGTTCTCTCTATGTCTCCCCACATACTACCTATCTGTCTTCAAAGCTCCCAGCTCGATCTACAAAGTTGTTGAAAAGATTTTGCAGAATTTCCTCTGGAAAGGTACCACCAAACACAGTGGCTCACATCTCATTCGATGGGACATTGTTACTTTCCCAAAAGAACATGGTGGACTTGGCATAGACAAAGTTAAAATCACTAATGAAGCTTTCCTATGTAACTGGATATGGAGATACTTAACAGAGATGAACAGCCTTTGGAGAAAACTGATTGATGCAAAATATAGCTACAACTACCTTGAGATTATCCATTCTATATGCAGGTACAGTAGTTCAAAAGCACCTTGGTTCCACATATCCAAATTTGAGAACATCATGCTCAACAATATACAAAGGATTATCTGGAACGGGAAGGACACCATGTTTTGGCTCCATCTCTGGAACTCTAGTGGAAAATTATATTAGTTATATCCTAGATTTTTTGCCCTTGCCACGGAGAAGATGATAAATGTTAAGGCAGTTTGGAAGGAAGAAACCCGAGAATGGAATCCGAATTTTCGAAGATCCCTGCTCAGTCGCGAAAAAGACTTATGGAACCAAATATCTGCTGAATGGAAACAGCCTACATCTAACACAGAGAATGATTACTATAAGTGGAAACATACTGTTGGAGGACTTTTCACAGTTAAATCCATGAAAAAAAATACTCATGCCAGCACCCCCCAGTCCTCCTTCCTTCGATGTTGGTTATCTCTGGTCCAACATCTGCAAAGAAGTGTATCATATTTATGTGGACCATTCTGAACAAAGGATTGGATACTGGAGACAAATGCCAAATCCGATCACCTAAGACGATGCTAAGCCCAAATTGGTGTATTCTTTGTAAAATGAATAATGAATCTGTTGAGCACATATTTATTCACTATCCCTTCTCCAAATTCCTCTAA

mRNA sequence

AGTTACTTGCACAAATCTTGTATAGCTGGTGTTTATGTTGGAGACGATCTTATTCAACAAGCTGAAGCCATTTGGGGCTATCACTCCTCACAACTTCCCATCAATTACCTTGATATGCCGCTTGAGGGTAACATGAAAAACATTACTTTTTGGTCCCCTACACTTGAGAATATGGAGAGAAAGCTCGACTCCTGGAAATTTGCATACATTTCAAAGGGAGGTAGACTCACATTAATACAAGCGGTTCTCTCTATGTCTCCCCACATACTACCTATCTGTCTTCAAAGCTCCCAGCTCGATCTACAAAGTACCACCAAACACAGTGGCTCACATCTCATTCGATGGGACATTGTTACTTTCCCAAAAGAACATGGTGGACTTGGCATAGACAAAGTTAAAATCACTAATGAAGCTTTCCTATGTAACTGGATATGGAGATACTTAACAGAGATGAACAGCCTTTGGAGAAAACTGATTGATGCAAAATATAGCTACAACTACCTTGAGATTATCCATTCTATATGCAGGTACAGTAGTTCAAAAGCACCTTGGTTCCACATATCCAAATTTGAGAACATCATGCTCAACAATATACAAAGGATTATCTGGAACGGGAAGGACACCATATTTTTTGCCCTTGCCACGGAGAAGATGATAAATGTTAAGGCAGTTTGGAAGGAAGAAACCCGAGAATGGAATCCGAATTTTCGAAGATCCCTGCTCAGTCGCGAAAAAGACTTATGGAACCAAATATCTGCTGAATGGAAACAGCCTACATCTAACACAGAGAATGATTACTATAAGTGGAAACATACTGTTGGAGGACTTTTCACACACCCCCCAGTCCTCCTTCCTTCGATGTTGGTTATCTCTGGTCCAACATCTGCAAAGAAGTGTATCATATTTATGTGGACCATTCTGAACAAAGGATTGGATACTGGAGACAAATGCCAAATCCGATCACCTAAGACGATGCTAAGCCCAAATTGGTGTATTCTTTGTAAAATGAATAATGAATCTGTTGAGCACATATTTATTCACTATCCCTTCTCCAAATTCCTCTAA

Coding sequence (CDS)

AGTTACTTGCACAAATCTTGTATAGCTGGTGTTTATGTTGGAGACGATCTTATTCAACAAGCTGAAGCCATTTGGGGCTATCACTCCTCACAACTTCCCATCAATTACCTTGATATGCCGCTTGAGGGTAACATGAAAAACATTACTTTTTGGTCCCCTACACTTGAGAATATGGAGAGAAAGCTCGACTCCTGGAAATTTGCATACATTTCAAAGGGAGGTAGACTCACATTAATACAAGCGGTTCTCTCTATGTCTCCCCACATACTACCTATCTGTCTTCAAAGCTCCCAGCTCGATCTACAAAGTACCACCAAACACAGTGGCTCACATCTCATTCGATGGGACATTGTTACTTTCCCAAAAGAACATGGTGGACTTGGCATAGACAAAGTTAAAATCACTAATGAAGCTTTCCTATGTAACTGGATATGGAGATACTTAACAGAGATGAACAGCCTTTGGAGAAAACTGATTGATGCAAAATATAGCTACAACTACCTTGAGATTATCCATTCTATATGCAGGTACAGTAGTTCAAAAGCACCTTGGTTCCACATATCCAAATTTGAGAACATCATGCTCAACAATATACAAAGGATTATCTGGAACGGGAAGGACACCATATTTTTTGCCCTTGCCACGGAGAAGATGATAAATGTTAAGGCAGTTTGGAAGGAAGAAACCCGAGAATGGAATCCGAATTTTCGAAGATCCCTGCTCAGTCGCGAAAAAGACTTATGGAACCAAATATCTGCTGAATGGAAACAGCCTACATCTAACACAGAGAATGATTACTATAAGTGGAAACATACTGTTGGAGGACTTTTCACACACCCCCCAGTCCTCCTTCCTTCGATGTTGGTTATCTCTGGTCCAACATCTGCAAAGAAGTGTATCATATTTATGTGGACCATTCTGAACAAAGGATTGGATACTGGAGACAAATGCCAAATCCGATCACCTAAGACGATGCTAAGCCCAAATTGGTGTATTCTTTGTAAAATGAATAATGAATCTGTTGAGCACATATTTATTCACTATCCCTTCTCCAAATTCCTCTAA

Protein sequence

SYLHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKLDSWKFAYISKGGRLTLIQAVLSMSPHILPICLQSSQLDLQSTTKHSGSHLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEIIHSICRYSSSKAPWFHISKFENIMLNNIQRIIWNGKDTIFFALATEKMINVKAVWKEETREWNPNFRRSLLSREKDLWNQISAEWKQPTSNTENDYYKWKHTVGGLFTHPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQIRSPKTMLSPNWCILCKMNNESVEHIFIHYPFSKFL
Homology
[Close]
BLAST of ClCG05G011780 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.9e-13
Identity = 88/360 (24.44%), Postives = 144/360 (40.00%), Query Frame = 1 

Query: 39  MPLEGNMKNITFWSPTLENMERKLDSWKFAYISKGGRLTLIQAVLS------MSPHILPI 98
           MP+     N   +   LE +  ++  W+   +S  GRLTL +AVLS      MS  +LP 
Sbjct: 1   MPVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQ 60

Query: 99  CLQSSQLDLQ------STTKHSGSHLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWR 158
            + +    L       ST +    HL++W  V  PK+ GGLG+   K  N A +    WR
Sbjct: 61  SILNRLDQLSRTFLWGSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWR 120

Query: 159 YLTEMNSLWRKLIDAKYSYNYLEIIHSICRYSSSKAPWFHIS-KFENIMLNNIQRIIWNG 218
            L E NSLW  ++  KY    +     +    S  + W  I+    +++ + +  I  +G
Sbjct: 121 LLQEKNSLWTLVLQKKYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDG 180

Query: 219 KDTIFFALATEKMINVKAVWKEETREWNPNFRRSLLSREKDLWNQISAEW------KQPT 278
           +   F+   T++ ++ K + + +  E  P    ++++  KDLW      W         T
Sbjct: 181 QQIRFW---TDRWVSGKPLLELDNGE-RPTDCDTVVA--KDLWIP-GRGWDFAKIDPYTT 240

Query: 279 SNTE--------------NDYYKWKHTVGGLF---------THPPVLLPSML-------V 338
           +NT                D   WK +  G F         T   V  P+M         
Sbjct: 241 NNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWK 300

Query: 339 ISGPTSAKKCIIFMWTILNKGLDTGDKCQIRSPKTMLSPNWCILCKMNNESVEHIFIHYP 350
           +  P   K    F+W + N+ + T ++   R  + + + N C +CK   ES+ H+    P
Sbjct: 301 VRVPERVK---TFLWLVGNQAVMTEEE---RHRRHLSASNVCQVCKGGVESMLHVLRDCP 347

[Close]
BLAST of ClCG05G011780 vs. TrEMBL
Match: A5AFR7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.5e-47
Identity = 124/391 (31.71%), Postives = 195/391 (49.87%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +++     +     S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 572 LEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 631

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
           D WK AY+S GGR+TLIQ+ LS  P        +P+ + S    +Q     SG+      
Sbjct: 632 DGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGAGEGKRD 691

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HLIRW++V+ P+E GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 692 HLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 751

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTI------FFA 242
             ++    S + PW  I       S F  +++ N +RI     +W G  T+       + 
Sbjct: 752 DANMVVRWSHRCPWKAIAQVFQKFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYR 811

Query: 243 LATEKMINVKAVWKEE-TREWNPNFRRSLLSREKDLWNQI-SAEWKQPTSNTENDYYKWK 302
           +++ + + V  V        WN NFRR+L   E DL+ ++ S+      S + +D   W 
Sbjct: 812 VSSVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLFQRLMSSLHSVLLSPSSSDSRAWS 871

Query: 303 HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 872 LSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHGKVNTNDKLQ 931

[Close]
BLAST of ClCG05G011780 vs. TrEMBL
Match: A5B978_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.8e-46
Identity = 124/391 (31.71%), Postives = 193/391 (49.36%), Query Frame = 1 

Query: 3    LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
            L KS I+G+    +++     +     S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 1421 LEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 1480

Query: 63   DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
            D WK AY+S GGR+TLIQ+ LS  P        +P+ + S    +Q     SG+      
Sbjct: 1481 DGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGAGEGKRD 1540

Query: 123  HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
            HLIRW++V+ P+E GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 1541 HLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 1600

Query: 183  IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTI------FFA 242
              ++    S + PW  I       S F  +++ N +RI     +W G  T+       + 
Sbjct: 1601 DANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYR 1660

Query: 243  LATEKMINVKAVWKEE-TREWNPNFRRSLLSREKDLWNQI-SAEWKQPTSNTENDYYKWK 302
            +++ + + V  V        WN NFRR+L   E DL  ++ S+      S +  D   W 
Sbjct: 1661 VSSVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSXDSRAWS 1720

Query: 303  HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
             +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 1721 LSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHGKVNTNDKLQ 1780

[Close]
BLAST of ClCG05G011780 vs. TrEMBL
Match: A5BZG3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.3e-46
Identity = 123/391 (31.46%), Postives = 192/391 (49.10%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +++     +     S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 223 LEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 282

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSG------S 122
           D WK  Y+S GGR+TLIQ+ LS  P        +P+ + S    +Q     SG       
Sbjct: 283 DGWKKTYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGVGEGKRD 342

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HLIRW++V+ P+E GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 343 HLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 402

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTI------FFA 242
             ++    S + PW  I       S F  +++ N +RI     +W G  T+       + 
Sbjct: 403 DANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIXFWEDLWWGNQTLCAQFAELYR 462

Query: 243 LATEKMINVKAVWKEE-TREWNPNFRRSLLSREKDLWNQI-SAEWKQPTSNTENDYYKWK 302
           +++ + + V  V        WN NFRR+L   E DL  ++ S+      S + +D   W 
Sbjct: 463 VSSVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWS 522

Query: 303 HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 523 LSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHGKVNTNDKLQ 582

[Close]
BLAST of ClCG05G011780 vs. TrEMBL
Match: A5BQI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.2e-46
Identity = 121/391 (30.95%), Postives = 191/391 (48.85%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +L+    +++    S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 378 LEKSTISGINTRQELLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 437

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
           D WK AY+S GGR+TLIQ+ LS  P        +P  + S    +Q     SG+      
Sbjct: 438 DGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPASVASKIEKMQRNFLWSGAGEGKKD 497

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HL+RW++V+ PKE GGLG  K+ + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 498 HLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRERSGLWYKVIGSIYGTHPNGW 557

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI------------IWNGKDTIFF 242
             ++    S + PW  I       S F  +++ N +RI            + +    ++ 
Sbjct: 558 DANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFXEDLWWGNQSLCSQFADLYR 617

Query: 243 ALATEKMINVKAVWKEETREWNPNFRRSLLSREKDLWNQISAEWKQPT-SNTENDYYKWK 302
            ++ + +     +       WN NFRR+L   E DL  ++ +       S +  D   W 
Sbjct: 618 VISVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWS 677

Query: 303 HTVGGLFT------------HPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  GLFT            +P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 678 LSSSGLFTVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVKAL-AWIVAHGKVNTNDKLQ 737

[Close]
BLAST of ClCG05G011780 vs. TrEMBL
Match: A5BBD6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010308 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.1e-45
Identity = 124/391 (31.71%), Postives = 188/391 (48.08%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +++     +      + P++YL +PL GN K I FW P +E + R+L
Sbjct: 487 LEKSTISGINTRQEVLSSLALVLECRVXEXPLSYLGLPLGGNXKTIGFWDPVVERISRRL 546

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
           D WK AY+S GGR+TLIQ+ LS  P        +P+ + S    +      SG+      
Sbjct: 547 DGWKXAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMXRDFLWSGAXEGKKD 606

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HLIRW++V+ PKE GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 607 HLIRWEVVSRPKEMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 666

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTIFFALA-TEK 242
             +I    S + PW  I       S F  +++ N +RI     +W G  T+    A   +
Sbjct: 667 DANIVVRWSHRCPWKXIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCSQFADLYR 726

Query: 243 MINVK------AVWKEETREWNPNFRRSLLSREKDLWNQISAEWKQP-TSNTENDYYKWK 302
           +I+VK       +       WN  FRR+L   E DL  ++ +       S   +D   W 
Sbjct: 727 VISVKNLTVSNVLGNSLPLSWNFXFRRNLTDSEIDLLQRLMSSLNSVLLSPXXSDSRAWS 786

Query: 303 HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 787 LSSSGSFSVKXFFYALSKVSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHXKVNTNDKLQ 846

[Close]
BLAST of ClCG05G011780 vs. TAIR10
Match: AT3G24255.1 (AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-08
Identity = 40/149 (26.85%), Postives = 63/149 (42.28%), Query Frame = 1 

Query: 27  YHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKLDSWKFAYISKGGRLTLIQAVLS-- 86
           + S  LP+ YL +PL       + + P +E +  ++  W   ++S  GRL LI +V+   
Sbjct: 18  FASGALPVRYLGLPLLTKKMTTSDYGPLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSL 77

Query: 87  ----MSPHILPICLQSSQLDLQSTTKHSGSHL------IRWDIVTFPKEHGGLGIDKVK- 146
               MS   LP         + S+   SG  L      + W  V  PK+ GGLGI  +K 
Sbjct: 78  TNFWMSAFRLPSACIKEIDSICSSFLWSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKE 137

Query: 147 --------ITNEAFLCNWIWRYLTEMNSL 155
                   I+    L +W+W+ + +  +L
Sbjct: 138 ANKGSFWSISGNTTLGSWMWKKILKHRAL 166

[Close]
BLAST of ClCG05G011780 vs. NCBI nr
Match: gi|147841235|emb|CAN75609.1| (hypothetical protein VITISV_002943 [Vitis vinifera])

HSP 1 Score: 196.1 bits (497), Expect = 1.1e-46
Identity = 124/391 (31.71%), Postives = 195/391 (49.87%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +++     +     S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 572 LEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 631

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
           D WK AY+S GGR+TLIQ+ LS  P        +P+ + S    +Q     SG+      
Sbjct: 632 DGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGAGEGKRD 691

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HLIRW++V+ P+E GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 692 HLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 751

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTI------FFA 242
             ++    S + PW  I       S F  +++ N +RI     +W G  T+       + 
Sbjct: 752 DANMVVRWSHRCPWKAIAQVFQKFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYR 811

Query: 243 LATEKMINVKAVWKEE-TREWNPNFRRSLLSREKDLWNQI-SAEWKQPTSNTENDYYKWK 302
           +++ + + V  V        WN NFRR+L   E DL+ ++ S+      S + +D   W 
Sbjct: 812 VSSVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLFQRLMSSLHSVLLSPSSSDSRAWS 871

Query: 303 HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 872 LSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHGKVNTNDKLQ 931

[Close]
BLAST of ClCG05G011780 vs. NCBI nr
Match: gi|147838572|emb|CAN74312.1| (hypothetical protein VITISV_037520 [Vitis vinifera])

HSP 1 Score: 194.1 bits (492), Expect = 4.1e-46
Identity = 124/391 (31.71%), Postives = 193/391 (49.36%), Query Frame = 1 

Query: 3    LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
            L KS I+G+    +++     +     S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 1421 LEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 1480

Query: 63   DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
            D WK AY+S GGR+TLIQ+ LS  P        +P+ + S    +Q     SG+      
Sbjct: 1481 DGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGAGEGKRD 1540

Query: 123  HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
            HLIRW++V+ P+E GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 1541 HLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 1600

Query: 183  IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTI------FFA 242
              ++    S + PW  I       S F  +++ N +RI     +W G  T+       + 
Sbjct: 1601 DANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCAQFAELYR 1660

Query: 243  LATEKMINVKAVWKEE-TREWNPNFRRSLLSREKDLWNQI-SAEWKQPTSNTENDYYKWK 302
            +++ + + V  V        WN NFRR+L   E DL  ++ S+      S +  D   W 
Sbjct: 1661 VSSVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSXDSRAWS 1720

Query: 303  HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
             +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 1721 LSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHGKVNTNDKLQ 1780

[Close]
BLAST of ClCG05G011780 vs. NCBI nr
Match: gi|147802490|emb|CAN75156.1| (hypothetical protein VITISV_042643 [Vitis vinifera])

HSP 1 Score: 193.0 bits (489), Expect = 9.1e-46
Identity = 123/391 (31.46%), Postives = 192/391 (49.10%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +++     +     S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 223 LEKSTISGINTRQEMLSSLALVLECRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 282

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSG------S 122
           D WK  Y+S GGR+TLIQ+ LS  P        +P+ + S    +Q     SG       
Sbjct: 283 DGWKKTYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMQRDFLWSGVGEGKRD 342

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HLIRW++V+ P+E GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 343 HLIRWEVVSRPREMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 402

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTI------FFA 242
             ++    S + PW  I       S F  +++ N +RI     +W G  T+       + 
Sbjct: 403 DANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIXFWEDLWWGNQTLCAQFAELYR 462

Query: 243 LATEKMINVKAVWKEE-TREWNPNFRRSLLSREKDLWNQI-SAEWKQPTSNTENDYYKWK 302
           +++ + + V  V        WN NFRR+L   E DL  ++ S+      S + +D   W 
Sbjct: 463 VSSVRNLTVSNVLGNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWS 522

Query: 303 HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 523 LSSSGSFSVKSFFYALSKDSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHGKVNTNDKLQ 582

[Close]
BLAST of ClCG05G011780 vs. NCBI nr
Match: gi|147821641|emb|CAN70431.1| (hypothetical protein VITISV_030910 [Vitis vinifera])

HSP 1 Score: 192.6 bits (488), Expect = 1.2e-45
Identity = 121/391 (30.95%), Postives = 191/391 (48.85%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +L+    +++    S+ P++YL +PL GN K I FW P +E + R+L
Sbjct: 378 LEKSTISGINTRQELLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRL 437

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
           D WK AY+S GGR+TLIQ+ LS  P        +P  + S    +Q     SG+      
Sbjct: 438 DGWKKAYLSLGGRITLIQSCLSHIPSYFLSLFKIPASVASKIEKMQRNFLWSGAGEGKKD 497

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HL+RW++V+ PKE GGLG  K+ + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 498 HLVRWEVVSRPKELGGLGFGKISLRNIALLGKWLWRFPRERSGLWYKVIGSIYGTHPNGW 557

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI------------IWNGKDTIFF 242
             ++    S + PW  I       S F  +++ N +RI            + +    ++ 
Sbjct: 558 DANMVVRWSHRCPWKAIAQVFQEFSPFVRLVVGNGERIRFXEDLWWGNQSLCSQFADLYR 617

Query: 243 ALATEKMINVKAVWKEETREWNPNFRRSLLSREKDLWNQISAEWKQPT-SNTENDYYKWK 302
            ++ + +     +       WN NFRR+L   E DL  ++ +       S +  D   W 
Sbjct: 618 VISVKNLTVSNVLGNSFPLAWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWS 677

Query: 303 HTVGGLFT------------HPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  GLFT            +P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 678 LSSSGLFTVKSFFLALSKVSNPILFLPAKFLWSSKVPSKVKAL-AWIVAHGKVNTNDKLQ 737

[Close]
BLAST of ClCG05G011780 vs. NCBI nr
Match: gi|147866931|emb|CAN83063.1| (hypothetical protein VITISV_010308 [Vitis vinifera])

HSP 1 Score: 190.3 bits (482), Expect = 5.9e-45
Identity = 124/391 (31.71%), Postives = 188/391 (48.08%), Query Frame = 1 

Query: 3   LHKSCIAGVYVGDDLIQQAEAIWGYHSSQLPINYLDMPLEGNMKNITFWSPTLENMERKL 62
           L KS I+G+    +++     +      + P++YL +PL GN K I FW P +E + R+L
Sbjct: 487 LEKSTISGINTRQEVLSSLALVLECRVXEXPLSYLGLPLGGNXKTIGFWDPVVERISRRL 546

Query: 63  DSWKFAYISKGGRLTLIQAVLSMSPHI------LPICLQSSQLDLQSTTKHSGS------ 122
           D WK AY+S GGR+TLIQ+ LS  P        +P+ + S    +      SG+      
Sbjct: 547 DGWKXAYLSLGGRITLIQSCLSHIPSYFLSLFKIPVSIASKIEKMXRDFLWSGAXEGKKD 606

Query: 123 HLIRWDIVTFPKEHGGLGIDKVKITNEAFLCNWIWRYLTEMNSLWRKLIDAKYSYNYLEI 182
           HLIRW++V+ PKE GGLG  K  + N A L  W+WR+  E + LW K+I + Y  +    
Sbjct: 607 HLIRWEVVSRPKEMGGLGFGKTSMRNSALLGKWLWRFPRERSGLWHKVIASIYGTHPNGW 666

Query: 183 IHSICRYSSSKAPWFHI-------SKFENIMLNNIQRI-----IWNGKDTIFFALA-TEK 242
             +I    S + PW  I       S F  +++ N +RI     +W G  T+    A   +
Sbjct: 667 DANIVVRWSHRCPWKXIAQVFQEFSPFVRLVVGNGERIRFWEDLWWGNQTLCSQFADLYR 726

Query: 243 MINVK------AVWKEETREWNPNFRRSLLSREKDLWNQISAEWKQP-TSNTENDYYKWK 302
           +I+VK       +       WN  FRR+L   E DL  ++ +       S   +D   W 
Sbjct: 727 VISVKNLTVSNVLGNSLPLSWNFXFRRNLTDSEIDLLQRLMSSLNSVLLSPXXSDSRAWS 786

Query: 303 HTVGGLF------------THPPVLLPSMLVISGPTSAKKCIIFMWTILNKGLDTGDKCQ 350
            +  G F            ++P + LP+  + S    +K   +  W + +  ++T DK Q
Sbjct: 787 LSSSGSFSVKXFFYALSKVSNPLMFLPAKFLWSSKVPSKVKAL-AWLVAHXKVNTNDKLQ 846

The following BLAST results are available for this feature:
BLAST of ClCG05G011780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH5.9e-1324.44Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
BLAST of ClCG05G011780 vs. TrEMBL
Match NameE-valueIdentityDescription
A5AFR7_VITVI7.5e-4731.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002943 PE=4 SV=1[more]
A5B978_VITVI2.8e-4631.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037520 PE=4 SV=1[more]
A5BZG3_VITVI6.3e-4631.46Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042643 PE=4 SV=1[more]
A5BQI4_VITVI8.2e-4630.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1[more]
A5BBD6_VITVI4.1e-4531.71Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010308 PE=4 SV=1[more]
BLAST of ClCG05G011780 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24255.16.1e-0826.85 RNA-directed DNA polymerase (reverse transcriptase)-related family p... [more]
BLAST of ClCG05G011780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147841235|emb|CAN75609.1|1.1e-4631.71hypothetical protein VITISV_002943 [Vitis vinifera][more]
gi|147838572|emb|CAN74312.1|4.1e-4631.71hypothetical protein VITISV_037520 [Vitis vinifera][more]
gi|147802490|emb|CAN75156.1|9.1e-4631.46hypothetical protein VITISV_042643 [Vitis vinifera][more]
gi|147821641|emb|CAN70431.1|1.2e-4530.95hypothetical protein VITISV_030910 [Vitis vinifera][more]
gi|147866931|emb|CAN83063.1|5.9e-4531.71hypothetical protein VITISV_010308 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011780.1ClCG05G011780.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G011780Silver-seed gourdcarwcgB0464
ClCG05G011780Silver-seed gourdcarwcgB0739
ClCG05G011780Cucumber (Chinese Long) v3cucwcgB234
ClCG05G011780Cucumber (Chinese Long) v3cucwcgB241
ClCG05G011780Watermelon (97103) v2wcgwmbB229
ClCG05G011780Wax gourdwcgwgoB438
ClCG05G011780Wax gourdwcgwgoB441
ClCG05G011780Cucumber (Gy14) v1cgywcgB004
ClCG05G011780Cucurbita maxima (Rimu)cmawcgB234
ClCG05G011780Cucurbita maxima (Rimu)cmawcgB407
ClCG05G011780Cucurbita moschata (Rifu)cmowcgB220
ClCG05G011780Cucurbita moschata (Rifu)cmowcgB406
ClCG05G011780Wild cucumber (PI 183967)cpiwcgB236
ClCG05G011780Wild cucumber (PI 183967)cpiwcgB241
ClCG05G011780Cucumber (Chinese Long) v2cuwcgB229
ClCG05G011780Cucumber (Chinese Long) v2cuwcgB233
ClCG05G011780Melon (DHL92) v3.5.1mewcgB427
ClCG05G011780Cucurbita pepo (Zucchini)cpewcgB518
ClCG05G011780Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G011780Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G011780Cucumber (Gy14) v2cgybwcgB217
ClCG05G011780Melon (DHL92) v3.6.1medwcgB420
ClCG05G011780Melon (DHL92) v3.6.1medwcgB427