ClCG05G011730 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G011730
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionPolynucleotidyl transferase, ribonuclease H-like superfamily protein LENGTH=292
LocationCG_Chr05 : 14293796 .. 14296458 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCAAGCTTACCAGTTCGTGGAGTGAGGAAAGAATTGAGTAGAAGGGTGAAGCTTTCTGCTTGCTAGGGTGGGAGGTTTAATTGAAAATTAAGGAGATTTTATGATTTACGAAGGAGGAGATGAATGTAGAAAGAGAGTGCAATTGAGAGGGAGGGGAGATAAGTACAAAGAGATGCTTGAAATTTCAGCATACTCAGATTTATTTTTTTGGATATTTGTAAAAGATAGCAAAATAAGGGTTTAGGGTTACTGAATCTACCTTCGTTTTCGGGAGAATGATTACTAATAATGCTATTTTGGGTTTTGAATGTTTACATGCTATTAGTAGCAAATGAGTTGGGAAAGACGAGTGGGTGGCTCTTAAACTGGACATGAGCAAAGACTATGATAAGGTCGAATGGCTGTTTTTGCGAGCTATGCTCTTTATTGGCCTTGACAGGGCGTGGGTCAGGATGCTCATGAGGTGTGTGGAAACGGTCAAATTTTCTGTCCTCATCAATGGTAAGCCCCATCACGAGTTTGTTCCTCAAAGAGGTCTTCGCCAAGGGGACCCTCTATCTCCCTATTTGTTCCTCATTTGCACGGAAGGTTTGTCGGCTCTTCTGCACAGAAAAGAAGCTGTATCTCTTATTCATGGTATTCGTTTAAATAGACATTGCCTGTCCCTTTCTCACCTTTTTTTTTTGCAGATGACAACTTGATTTTCTTTAAAGCGTCGATTTTCGAGAGCAGGAATATTCGCAAAATTTTGCAAGAGTATGAAGAAGTGTCGGGCCAAATGATCAACATGGATAAGTCTAAATGTCTCTTTAGTAAGAATGTTAGGCAACAGTTGGTGTTTGAAATCAGTAATGTCCTAGGAGTGCGAAAACTAACTCTTTAGGGATCTATTTGGTCGGTTCATAATCGTAAGAACAAATCTCGTCTGTTTAACAGGCTGAAGGAAAGAGTCTTGAAGGTTTTGCAAGGTTGGAAAGAGAAGCTCTTCTCCTTTAGTGGCAAAGAGACTTTGATTAAGGCTATAGCCCAAGCAATCCCCACCTATACAATGAGCTGTTTCAAGCTTCCCCGAACAGTTTGTGATGATTTGAATAGGGCATGTGCTCGTTTCTGGTGGGGGTCTTTTGGGGATAAAAAGAAAATGCACTGGATGAGCTGGAATAAGCTTTGTGTCAGCAAGGATGCTGGGGGTCTTGGTTTTCGAGATATCTAGTTATTCAACCAGGTTATGCTTGCTAAATAAAGTCGGAGAATAGTTAAAAATCCTAACAGCCTGCTTGCGCGTGTTCTCAAAGGCCGATATTTTAAGGATGATGATTTTGGTAATGCCTTGTTGGGGAGCAATCCCTCCCTCACTTGGAGGGGTATTCTGTGGGGGAGGGAGTTGTTCCTCAAAGGCTATAGATGGAAGGTGGAAAAAGGGAATTATGTGAGTGTTTTTCATGACCCGTGATTTCCGGAGGTTGGCCATATGACCCCTATTTGCACAAATGGGAATTTGGCCTCGATGAGGGTTCGAGATATTATTAACAGTGATGGAAGTTGGAATTCTGAGTTGATTCATAACATTTTCCTCCCCGATGATGCAAAGTCCATTCTTAGTGTGCCTTACGGGGTACCGGGGGAGCGGATGAGATCATTTGGGGTCTCGACCCAAATGGCTATTTCTCTGTTAAAAATGCGTACAAGTTAGCGGTGAACTTAAAAGCGTCGCTTGGAGATTCTAGTTCTGAGCTTCTGAAAAATAAGCCTTTCTGGAAATCTGCATGGAGGCTTTGGCTTCCCCCAAGGGTGAAAATGTTGGTGTGGAAGTCCATTACCGATTCCCTGCCCGCTCTAAGTAACATAACAAAGAAAGGAATTGCTATTAACCCTGTTTGTTCTTTTTGCAGGAAATTTGTGGAATCGTTGAGCCATGTGTTGTGAGGGTGTAAATTTACTAAAAGCATTTGGCCTTCTATTTTTCCGTCCTTAGCTAGTTTTCTTTCTGAGTTTAGGGACTGTTGGGATAGAGTGTTGATGAAGTTGTCTAGTACGGATCGAGATAATGCCGCTATCCTTCTTTGGGATGTCTGGAACTACAGGAACTGTTTGCTGCATACTGGCAACTCCCCGGTGCACAATGTTTTGGTTGGCAAGATCTCTGTGCATGTCGAGGAGTTTTGTGGGGAAATGGCGCTAAGTAGGTGTCTCTTTGGAGAGAGTTGCTGGGGGGCCAGGAGGTGTGGGTGCCGCCTGTTTTGGGCTCTTGGAAGATCAACACCGATGCCTCGTGGTCTGAGCTTGAAGAGGCGGGTGGGATTAGTTGGGTAGTTCGTGACTCGTTTGGCTCGGTCATCCTAGCTAGGTGTGAGAATGTGGCCCTCTTCTGGTCCATTAAGTTCCTTGAGGCCTTGGCGATGATTAGAGGTTTGAAACCTCTCGTTAACTATTTCGCTCAAGGTCTCCTTCCCTTTGTTTCGGTGGAGTCTGATTGTGTGAACCTTATCAATGCTATTAATCATAAGACTCCGGACCTGTCGGAATTGGAGAGTTTTGTTGAGGAGATTGGGTCTTTGGCTGCTTCTGCTCATGTGGTTTTCTTTCGTTGGTGTATGCGGTCGGCAAATGGGTTGGCTCATCGCTTGGCTAGTGCGGCGGTGCGGAGTGGTGACTAG

mRNA sequence

ATGAGATCAAGCTTACCAGTTCGTGGAGTGAGGAAAGAATTGAGTAGAAGGTGTGCCTTACGGGGTACCGGGGGAGCGGATGAGATCATTTGGGGTCTCGACCCAAATGGCTATTTCTCTGTTAAAAATGCGTACAAGTTAGCGGTGAACTTAAAAGCGTCGCTTGGAGATTCTAGTTCTGAGCTTCTGAAAAATAAGCCTTTCTGGAAATCTGCATGGAGGCTTTGGCTTCCCCCAAGGGTGAAAATGTTGGTGTGGAAGTCCATTACCGATTCCCTGCCCGCTCTAAGTAACATAACAAAGAAAGGAATTGCTATTAACCCTGAAATTTGTGGAATCGTTGAGCCATGTGTTGTGAGGGTGGACTGTTGGGATAGAGTGTTGATGAAGTTGTCTAGTACGGATCGAGATAATGCCGCTATCCTTCTTTGGGATGTCTGGAACTACAGGAACTGTTTGCTGCATACTGGCAACTCCCCGGTGCACAATGTTTTGGTTGGCAAGATCTCTGTGCATGTCGAGGAGTTTTGTGGGGAAATGGCGCTAAGTAGAGAGTTGCTGGGGGGCCAGGAGGTGTGGGTGCCGCCTGTTTTGGGCTCTTGGAAGATCAACACCGATGCCTCGTGGTCTGAGCTTGAAGAGGCGGGTGGGATTAGTTGGGTAGTTCGTGACTCGTTTGGCTCGGTCATCCTAGCTAGGTGTGAGAATGTGGCCCTCTTCTGGTCCATTAAGTTCCTTGAGGCCTTGGCGATGATTAGAGGTTTGAAACCTCTCGTTAACTATTTCGCTCAAGGTCTCCTTCCCTTTGTTTCGGTGGAGTCTGATTGTGTGAACCTTATCAATGCTATTAATCATAAGACTCCGGACCTGTCGGAATTGGAGAGTTTTGTTGAGGAGATTGGGTCTTTGGCTGCTTCTGCTCATGTGGTTTTCTTTCGTTGGTGTATGCGGTCGGCAAATGGGTTGGCTCATCGCTTGGCTAGTGCGGCGGTGCGGAGTGGTGACTAG

Coding sequence (CDS)

ATGAGATCAAGCTTACCAGTTCGTGGAGTGAGGAAAGAATTGAGTAGAAGGTGTGCCTTACGGGGTACCGGGGGAGCGGATGAGATCATTTGGGGTCTCGACCCAAATGGCTATTTCTCTGTTAAAAATGCGTACAAGTTAGCGGTGAACTTAAAAGCGTCGCTTGGAGATTCTAGTTCTGAGCTTCTGAAAAATAAGCCTTTCTGGAAATCTGCATGGAGGCTTTGGCTTCCCCCAAGGGTGAAAATGTTGGTGTGGAAGTCCATTACCGATTCCCTGCCCGCTCTAAGTAACATAACAAAGAAAGGAATTGCTATTAACCCTGAAATTTGTGGAATCGTTGAGCCATGTGTTGTGAGGGTGGACTGTTGGGATAGAGTGTTGATGAAGTTGTCTAGTACGGATCGAGATAATGCCGCTATCCTTCTTTGGGATGTCTGGAACTACAGGAACTGTTTGCTGCATACTGGCAACTCCCCGGTGCACAATGTTTTGGTTGGCAAGATCTCTGTGCATGTCGAGGAGTTTTGTGGGGAAATGGCGCTAAGTAGAGAGTTGCTGGGGGGCCAGGAGGTGTGGGTGCCGCCTGTTTTGGGCTCTTGGAAGATCAACACCGATGCCTCGTGGTCTGAGCTTGAAGAGGCGGGTGGGATTAGTTGGGTAGTTCGTGACTCGTTTGGCTCGGTCATCCTAGCTAGGTGTGAGAATGTGGCCCTCTTCTGGTCCATTAAGTTCCTTGAGGCCTTGGCGATGATTAGAGGTTTGAAACCTCTCGTTAACTATTTCGCTCAAGGTCTCCTTCCCTTTGTTTCGGTGGAGTCTGATTGTGTGAACCTTATCAATGCTATTAATCATAAGACTCCGGACCTGTCGGAATTGGAGAGTTTTGTTGAGGAGATTGGGTCTTTGGCTGCTTCTGCTCATGTGGTTTTCTTTCGTTGGTGTATGCGGTCGGCAAATGGGTTGGCTCATCGCTTGGCTAGTGCGGCGGTGCGGAGTGGTGACTAG

Protein sequence

MRSSLPVRGVRKELSRRCALRGTGGADEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLVWKSITDSLPALSNITKKGIAINPEICGIVEPCVVRVDCWDRVLMKLSSTDRDNAAILLWDVWNYRNCLLHTGNSPVHNVLVGKISVHVEEFCGEMALSRELLGGQEVWVPPVLGSWKINTDASWSELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGLLPFVSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRLASAAVRSGD
Homology
[Close]
BLAST of ClCG05G011730 vs. TrEMBL
Match: M5XSK0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016553mg PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 100/339 (29.50%), Postives = 156/339 (46.02%), Query Frame = 1 

Query: 27  DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSE----LLKNKPFWKSAWRLWLPPRVK 86
           D ++W  D  G F+VK+AY +A +L +S G +SS     + +N   W   W+  +P RVK
Sbjct: 646 DMLVWHYDKKGMFTVKSAYHVARSLHSSTGRASSSNSDAVARN---WSLLWKAIVPARVK 705

Query: 87  MLVWKSITDSLPALSNITKKGIAINPE--IC-GIVEPCV-VRVDC-WD-----------R 146
              W+ I+  LP  +N+ +K ++++ E  +C G V+  + +  DC W+           R
Sbjct: 706 TFWWRVISGILPTKANLARKKVSLDEECMLCEGPVKSLIHILRDCPWNNGAHSPKDWVCR 765

Query: 147 VLMKLSSTDRDNAAILLWDVWNYRNCLLHTGNSPVHNVLVGKISVHVEEFCG-EMALSRE 206
              +LSS D     ++ W +W  RN LL       H  +    S+ + +F      L  +
Sbjct: 766 CAEQLSSQDFATFLMVGWAIWEARNGLLWNNKKSRHEQVSLHASLRLHDFLRVSNCLGSQ 825

Query: 207 LLGGQ--EVWVPPVLGSWKINTDASWSELEEAGGISWVVRDSFGSVILARCENVALFWSI 266
              GQ  ++W PP   S KIN D +W      GG+  VVRDS G  +      +   +S 
Sbjct: 826 SRQGQIKQMWQPPHENSLKINVDGAWKPGTTEGGVGVVVRDSTGKFVAGCATKLTNVFSA 885

Query: 267 KFLEA--------LAMIRGLKPLVNYFAQGLLPFVSVESDCVNLINAINHKTPDLSELES 326
             +EA        LAM RG + +V             ESD + ++ A+ + + D S +  
Sbjct: 886 PQVEALAARTNTILAMERGYQNVV------------FESDALQIVTALRNHSIDRSVIGP 945

Query: 327 FVEEIGSLAASAHVVFFRWCMRSANGLAHRLASAAVRSG 335
            VE+  SL        F    R+ANG+AHRLA  A+  G
Sbjct: 946 VVEDTKSLLTQITGEGFTHIRRTANGVAHRLARFALHIG 969

[Close]
BLAST of ClCG05G011730 vs. TrEMBL
Match: B9FYJ3_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_28268 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 102/359 (28.41%), Postives = 153/359 (42.62%), Query Frame = 1 

Query: 27   DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLVW 86
            D I W  D  G FSV++AY LAV L      SSS    +     + W+   P +VK+  W
Sbjct: 875  DFIAWHPDRLGRFSVRSAYHLAVALAQVNDGSSSSGNGSSRACNALWKCNAPQKVKIFAW 934

Query: 87   KSITDSLPALSNITKKGIAINP--EICGIVEPCVVRV--------DCW-----DRVLMKL 146
            ++IT+SL  L N  K+ + ++    ICG+    VV            W     D  L  L
Sbjct: 935  RAITNSLTTLENKKKRKLEVSDICTICGVESEYVVHALFHCPHARQLWEAMSDDMQLNPL 994

Query: 147  SSTDRDNAAILL------------------WDVWNYRNCLLHTGNSPVHNVLVGKISV-- 206
            S+    ++ ++L                  W +W+ RN ++H    P   +LV K  +  
Sbjct: 995  SNIHNGDSKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVH--GKPAPGILVSKRFIES 1054

Query: 207  --------------------HVEEFC--GEMALSRELLGGQEVWVPPVLGSWKINTDASW 266
                                HV +       ++ R      + W  P+ GS K+N D S+
Sbjct: 1055 YVLSLAEIKQHPQANPEKGKHVVDVVLKKSHSIKRSREPAPDKWSKPLPGSMKLNVDGSF 1114

Query: 267  SELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGLLPF 326
             E E  GGI  V+R+  G VI A C +V    S   +E LA   GL   + +    LLP 
Sbjct: 1115 QESEGKGGIGAVLRNCTGEVIFAACGHVDHCSSALEMELLASRDGLALALQW---TLLPI 1174

Query: 327  VSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRLAS 329
            V +E+DC+ +++     T   SEL   + EI SL      + F  C+RS N ++H LA+
Sbjct: 1175 V-IETDCLAMVHLFRDATGAKSELAFLITEIDSLLVGNRDISFNKCLRSQNLISHCLAN 1227

[Close]
BLAST of ClCG05G011730 vs. TrEMBL
Match: Q75M12_ORYSJ (Uncharacterized protein OS=Oryza sativa subsp. japonica GN=P0431G05.11 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18
Identity = 85/304 (27.96%), Postives = 134/304 (44.08%), Query Frame = 1 

Query: 27   DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLVW 86
            D I W  D  G FSV++AYKLA+ L      SSS   +    W+  W+  +P +V++  W
Sbjct: 1639 DFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAW 1698

Query: 87   KSITDSLPALSNITKKGIAINPEICGIVEPCVVRVDCWDRVLMKLSSTDRDNAAILLWDV 146
            +  ++SL  + N  K+ +    ++CGI +                   ++++A   L   
Sbjct: 1699 RVASNSLATMENKKKRNLE-RFDVCGICD------------------REKEDAGHAL--- 1758

Query: 147  WNYRNCLLHTGNSPVHNVLVGKISVHVEEFCGEMALSRELLGGQEVWVPPVLGSWKINTD 206
                 C     NS   N+  GK  V V  F    A+          W  P  G  K+N D
Sbjct: 1759 -----CRCVHANSLWVNLEKGKYVVSVN-FPKTTAIKHTPGAENRRWERPRNGWMKLNVD 1818

Query: 207  ASWSELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGL 266
             S+    E GGI  ++R+  G+VI + C ++         E  A + GL   +++    L
Sbjct: 1819 GSFDINSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACVEGLHLALHW---TL 1878

Query: 267  LPFVSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRL 326
            LP + VE+DC ++I  +NH   D S L +  +E  SL A    +      RS N ++H L
Sbjct: 1879 LP-IQVETDCSSVIQLLNHPDKDRSVLANIAQEAKSLMAGDRQIAISKVQRSQNVISHFL 1910

Query: 327  ASAA 331
            A+ A
Sbjct: 1939 ANKA 1910

[Close]
BLAST of ClCG05G011730 vs. TrEMBL
Match: A0A0J8BAU9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179330 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.4e-18
Identity = 90/337 (26.71%), Postives = 149/337 (44.21%), Query Frame = 1 

Query: 27  DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLVW 86
           DEI W    +G F V++AY+LA+       +++S  L   P WK  W L +PP+V   +W
Sbjct: 461 DEICWVGSVDGLFKVRDAYRLAIEND----NTASSSLGFDPIWKHIWALCIPPKVSNFLW 520

Query: 87  KSITDSLPALSNITKKGIAINPEI--CGIVEPC-------------------------VV 146
           ++  D LP   N+ KK      +   CG+ E                           VV
Sbjct: 521 RATWDILPHNVNLKKKRAVEESKCIRCGLEETTLHCFRDCEWVREAWAKDGTVWQCASVV 580

Query: 147 RVDCWDRVLMKLSSTDRDNAAIL-LWDVWNYRNCLLHTGNSPVHNVLVGKISV----HVE 206
               W   + +    ++    ++ +W +W  RN L+   N+     L  + ++    H  
Sbjct: 581 NFKEWLAWIFEFFPKEQQEVFVMKIWQLWKCRNELIFQ-NTLCSAGLAWERAIDILRHHR 640

Query: 207 EFCGEMALSRE-LLGGQEVWVPPVLGSWKINTDASWSELEEAGGISWVVRDSFGSVILAR 266
           +F G     RE +   ++ W+ P  G  KIN DA+ +      G+  V RD  G V+ A 
Sbjct: 641 KFNGS---KREGVKRAKDRWLLPSPGFIKINVDAAVNGEYCRVGLGMVARDENGQVLRAW 700

Query: 267 CENVALFWSIKFLEALAMIRGLKPLVNYFAQGLLPFVSVESDCVNLINAINHKTPDLSEL 326
              ++  W  +  EA A++   +  +   AQG    V +ESD   +INAIN +     ++
Sbjct: 701 SRTMSHDWPAEKAEAAAVLWATEEAI---AQGWSNVV-LESDAQVIINAINSRLQRRGDI 760

Query: 327 ESFVEEIGSLAASAHVVFFRWCMRSANGLAHRLASAA 331
           ++ +E++ +L  S   + F +C R  N +AHRLA  A
Sbjct: 761 QAMLEDVLNLVPSFETIKFSFCYRECNEIAHRLAKWA 785

[Close]
BLAST of ClCG05G011730 vs. TrEMBL
Match: C7J4L5_ORYSJ (Os07g0501200 protein OS=Oryza sativa subsp. japonica GN=Os07g0501200 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.0e-18
Identity = 101/360 (28.06%), Postives = 154/360 (42.78%), Query Frame = 1 

Query: 26  ADEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLV 85
           AD + W  D +G FSV++AY LAV+L      SSS        WK  W   +P +VK+  
Sbjct: 239 ADFVAWHPDKHGIFSVRSAYHLAVSLANVNSSSSSSGHDLSKAWKLVWNCNIPQKVKIFA 298

Query: 86  WKSITDSLPALSNITKKGIAINP----EICGIVEPCVVRVDC------------------ 145
           WK+ T+SL  L N  KK   + P     ICG  E  V    C                  
Sbjct: 299 WKAATNSLATLQN--KKTRRLEPMAICSICGREEEDVAHALCRCPHATNLWLSLRSSKDI 358

Query: 146 -------WDR---VLMKLSSTDRDNAAI---LLWDVWNYRNCLLHTGNSPV----HNVLV 205
                  W     +L +L    ++  A+   LLW +W  RN + H  ++P     H  +V
Sbjct: 359 SFEAGASWSGSGWILDQLGLIAKEEGAMFLMLLWRIWYNRNEIYHGKSAPPVSVSHRFIV 418

Query: 206 GKISV--HVEEFC------GEMALSRE--LLGGQEVWVPPVLGSW--------KINTDAS 265
             +S    +++F       G+  +S    + G  +V  P VL  W        K+N D S
Sbjct: 419 SYVSSLREIKQFPRADFAKGKFVVSNLGCMKGTSQVPDPKVLNHWEKPNPGWMKLNVDGS 478

Query: 266 WSELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGLLP 325
           +     +GGI  V+R+S GS+I   C N++        E LA   G+   + +    LLP
Sbjct: 479 FDARYGSGGIGAVLRNSAGSLIF--CGNMSRCGGALEAELLACREGIIMALQW---TLLP 538

Query: 326 FVSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRLAS 329
           F+ VE+D + L+  +   + D SEL   V+E+    +    +  R   R  N ++  LA+
Sbjct: 539 FI-VETDSLELLKLVGAGSSDRSELAFLVKEVRDPLSGNREIIIRKIHRENNCVSDFLAN 590

[Close]
BLAST of ClCG05G011730 vs. TAIR10
Match: AT2G34320.1 (AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 50.1 bits (118), Expect = 3.2e-06
Identity = 56/208 (26.92%), Postives = 80/208 (38.46%), Query Frame = 1 

Query: 142 LLWDVWNYRNCLLHTGNSPVHNVLVGKISVHVEEFCGEMALSRELLGGQEV------WVP 201
           LLW +W  RN L+  G       ++ +     EE+     L  +  G Q        W  
Sbjct: 80  LLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWSTRRELEGKASGPQVERNLSVQWKA 139

Query: 202 PVLGSWKINTDASWSELEEAGGISWVVRDSFGSVI------LARCENV------ALFWSI 261
           P     K NTDA+W       GI W++R+  G V+      L R +NV      AL W++
Sbjct: 140 PPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNVLEAELEALRWAV 199

Query: 262 KFLEALAMIRGLKPLVNYFAQGLLPFVSVESDCVNLINAINHKTPDLSELESFVEEIGSL 321
                L M R      NY        +  ESD   L+N +N        L+  +E+I  L
Sbjct: 200 -----LTMSR-----FNY------KRIIFESDAQALVNLLN-SDDFWPTLQPALEDIQQL 259

Query: 322 AASAHVVFFRWCMRSANGLAHRLASAAV 332
                 V F +  R  N +A R+A  ++
Sbjct: 260 LHHFEEVKFEFTPRGGNKVADRIARESI 270

[Close]
BLAST of ClCG05G011730 vs. TAIR10
Match: AT4G29090.1 (AT4G29090.1 Ribonuclease H-like superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 4.1e-06
Identity = 52/194 (26.80%), Postives = 77/194 (39.69%), Query Frame = 1 

Query: 142 LLWDVWNYRNCLLHTGNSPVHNVLVGKISVHVEEF--------CGEMALSRELLGGQEVW 201
           LLW +W  RN L+  G       ++ +    +EE+        CG          G+  W
Sbjct: 363 LLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR--W 422

Query: 202 VPPVLGSWKINTDASWSELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIR 261
            PP     K NTDA+W+   E  GI WV+R+  G V       +    S+   E  AM  
Sbjct: 423 RPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGARALPKLKSVLEAELEAMRW 482

Query: 262 GLKPLVNYFAQGLLPFVSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFR 321
            +  L  +       +V  ESD   LI  +N+       L+  ++++  L +    V F 
Sbjct: 483 AVLSLSRF----QYNYVIFESDSQVLIEILNN-DEIWPSLKPTIQDLQRLLSQFTEVKFV 542

Query: 322 WCMRSANGLAHRLA 328
           +  R  N LA R+A
Sbjct: 543 FIPREGNTLAERVA 549

[Close]
BLAST of ClCG05G011730 vs. NCBI nr
Match: gi|596297302|ref|XP_007227312.1| (hypothetical protein PRUPE_ppa016553mg [Prunus persica])

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-24
Identity = 100/339 (29.50%), Postives = 156/339 (46.02%), Query Frame = 1 

Query: 27  DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSE----LLKNKPFWKSAWRLWLPPRVK 86
           D ++W  D  G F+VK+AY +A +L +S G +SS     + +N   W   W+  +P RVK
Sbjct: 646 DMLVWHYDKKGMFTVKSAYHVARSLHSSTGRASSSNSDAVARN---WSLLWKAIVPARVK 705

Query: 87  MLVWKSITDSLPALSNITKKGIAINPE--IC-GIVEPCV-VRVDC-WD-----------R 146
              W+ I+  LP  +N+ +K ++++ E  +C G V+  + +  DC W+           R
Sbjct: 706 TFWWRVISGILPTKANLARKKVSLDEECMLCEGPVKSLIHILRDCPWNNGAHSPKDWVCR 765

Query: 147 VLMKLSSTDRDNAAILLWDVWNYRNCLLHTGNSPVHNVLVGKISVHVEEFCG-EMALSRE 206
              +LSS D     ++ W +W  RN LL       H  +    S+ + +F      L  +
Sbjct: 766 CAEQLSSQDFATFLMVGWAIWEARNGLLWNNKKSRHEQVSLHASLRLHDFLRVSNCLGSQ 825

Query: 207 LLGGQ--EVWVPPVLGSWKINTDASWSELEEAGGISWVVRDSFGSVILARCENVALFWSI 266
              GQ  ++W PP   S KIN D +W      GG+  VVRDS G  +      +   +S 
Sbjct: 826 SRQGQIKQMWQPPHENSLKINVDGAWKPGTTEGGVGVVVRDSTGKFVAGCATKLTNVFSA 885

Query: 267 KFLEA--------LAMIRGLKPLVNYFAQGLLPFVSVESDCVNLINAINHKTPDLSELES 326
             +EA        LAM RG + +V             ESD + ++ A+ + + D S +  
Sbjct: 886 PQVEALAARTNTILAMERGYQNVV------------FESDALQIVTALRNHSIDRSVIGP 945

Query: 327 FVEEIGSLAASAHVVFFRWCMRSANGLAHRLASAAVRSG 335
            VE+  SL        F    R+ANG+AHRLA  A+  G
Sbjct: 946 VVEDTKSLLTQITGEGFTHIRRTANGVAHRLARFALHIG 969

[Close]
BLAST of ClCG05G011730 vs. NCBI nr
Match: gi|222641012|gb|EEE69144.1| (hypothetical protein OsJ_28268 [Oryza sativa Japonica Group])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 102/359 (28.41%), Postives = 153/359 (42.62%), Query Frame = 1 

Query: 27   DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLVW 86
            D I W  D  G FSV++AY LAV L      SSS    +     + W+   P +VK+  W
Sbjct: 875  DFIAWHPDRLGRFSVRSAYHLAVALAQVNDGSSSSGNGSSRACNALWKCNAPQKVKIFAW 934

Query: 87   KSITDSLPALSNITKKGIAINP--EICGIVEPCVVRV--------DCW-----DRVLMKL 146
            ++IT+SL  L N  K+ + ++    ICG+    VV            W     D  L  L
Sbjct: 935  RAITNSLTTLENKKKRKLEVSDICTICGVESEYVVHALFHCPHARQLWEAMSDDMQLNPL 994

Query: 147  SSTDRDNAAILL------------------WDVWNYRNCLLHTGNSPVHNVLVGKISV-- 206
            S+    ++ ++L                  W +W+ RN ++H    P   +LV K  +  
Sbjct: 995  SNIHNGDSKVILDLLEQSQPEDQVMLLMVLWRIWHTRNEIVH--GKPAPGILVSKRFIES 1054

Query: 207  --------------------HVEEFC--GEMALSRELLGGQEVWVPPVLGSWKINTDASW 266
                                HV +       ++ R      + W  P+ GS K+N D S+
Sbjct: 1055 YVLSLAEIKQHPQANPEKGKHVVDVVLKKSHSIKRSREPAPDKWSKPLPGSMKLNVDGSF 1114

Query: 267  SELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGLLPF 326
             E E  GGI  V+R+  G VI A C +V    S   +E LA   GL   + +    LLP 
Sbjct: 1115 QESEGKGGIGAVLRNCTGEVIFAACGHVDHCSSALEMELLASRDGLALALQW---TLLPI 1174

Query: 327  VSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRLAS 329
            V +E+DC+ +++     T   SEL   + EI SL      + F  C+RS N ++H LA+
Sbjct: 1175 V-IETDCLAMVHLFRDATGAKSELAFLITEIDSLLVGNRDISFNKCLRSQNLISHCLAN 1227

[Close]
BLAST of ClCG05G011730 vs. NCBI nr
Match: gi|645219258|ref|XP_008234850.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume])

HSP 1 Score: 112.1 bits (279), Expect = 1.9e-21
Identity = 95/362 (26.24%), Postives = 153/362 (42.27%), Query Frame = 1 

Query: 24  GGADEIIWGLDPNGYFSVKNAYKLAVNLKAS-------LGDSSSELLKNKPFWKSAWRLW 83
           G  D++IW    +G ++V++ Y+LA++L+ +        G++SS   ++   WKS W + 
Sbjct: 628 GCPDKLIWHFSMHGRYTVRSGYELALHLQRNGELGRKGAGEASSSSSQSA-VWKSVWHVD 687

Query: 84  LPPRVKMLVWKSITDSLPALSNITKKGIAINPE--ICGIVEPCVVRV--DC--------- 143
            PP++K  +W+  ++ L    N+ ++ +    E   CG  +     +  +C         
Sbjct: 688 APPKLKAFIWRGCSNFLAVRHNLRRRRVPCTGECGFCGFQDETQAHIFFECDFARAFWFA 747

Query: 144 ------------------WDRVLMKLSSTDRDNAAIL-----LWDVWNYRNCLLHTG--N 203
                             W  ++  L+S++    AI      LW +W  RN  +  G   
Sbjct: 748 SPLQLDVSKLAGDDFISTWQHMMTTLNSSEHAAEAIQWFVFGLWRIWKARNLAVFDGVQA 807

Query: 204 SPVHNVLVGKISVHVEEF------CGEMALSRELLGGQEVWVPPVLGSWKINTDASWSEL 263
            P+  VL+  +   V EF          AL          W  P  G  K+N DA+WS  
Sbjct: 808 DPIEAVLL--LLKQVSEFRTAKQDLQPQALQPVSSPAPLSWCKPPPGLLKVNCDAAWSAQ 867

Query: 264 EEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGLLPFVSV 323
              GG+ WV+RDSFG ++ A  +      S   +E LA+   L    N+     L  + V
Sbjct: 868 RLGGGVGWVIRDSFGLLLCAGGQGDLHGSSALMMELLAIRHALSECANFH----LTDIIV 927

Query: 324 ESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRLASAAVR 335
           ESD    I  +N +    S+LE  V +I  L AS   V F +  RS N  AH +A    +
Sbjct: 928 ESDSQKGIFMLNGRVSVDSDLEGIVFDIRQLVASLSRVSFVFAPRSCNRAAHSVAGFVSK 982

[Close]
BLAST of ClCG05G011730 vs. NCBI nr
Match: gi|658039861|ref|XP_008355518.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 104.4 bits (259), Expect = 4.0e-19
Identity = 100/375 (26.67%), Postives = 155/375 (41.33%), Query Frame = 1 

Query: 8   RGVRKE---LSRRCALRGTGGADEIIWGLDPNGYFSVKNAYKLAVNLKASLGD------- 67
           RGV  E   L R       G AD+ IW     G ++V++ Y +A+++  + G+       
Sbjct: 559 RGVAPEDMVLIRAIPFSRYGCADKRIWHYTKTGVYTVRSGYHVAMDMMKN-GEFGRKGRG 618

Query: 68  SSSELLKNKPFWKSAWRLWLPPRVKMLVWKSITDSLPALSNITKKGIAI--NPEICGIVE 127
            SS +      WK  W L +PP++   +WK+   +L    N+ ++ I I    E+CG+ +
Sbjct: 619 MSSSMGSLGGLWKXIWLLDVPPKLXFFMWKAGRRALAVRHNLERRRIHILNRCELCGVND 678

Query: 128 P--------CVVRVDCWDRVLMKLSSTDRD-------------------NAAILL----- 187
                    C      W    M+L+    D                   +A ++L     
Sbjct: 679 ETEAHLFFNCEFSRSFWFGTSMQLNMAALDVQDFLEGWKLVVKHLENVEDADLILQQVVF 738

Query: 188 --WDVWNYRNCLLHTGNSPVHNVLVGKISVHVEEFCGEMALSRELLG--GQEVWVPPVLG 247
             W +W  RN L   G +    V V     HVEEF      S    G  G + W      
Sbjct: 739 GFWRIWKCRNDLFFKGVTTEPRVAVELWHRHVEEFRTASDTSERGTGALGSDRWD----- 798

Query: 248 SWKINTDASWSELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLV 307
             ++N DA+W +    GG+ WV+RD  G  +LA       F      EA A+ RGL+ +V
Sbjct: 799 --RLNCDAAWKKATGEGGVGWVLRDFAGLPLLAXGMGGERFXDAIMAEAEAIRRGLESVV 858

Query: 308 NYFAQGLLPFVSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSA 335
                     + VESD   LIN +N +T    +LE ++++I  +     VV F +  R  
Sbjct: 859 GSEVWAGSTCLVVESDSKGLINMLNKETTVDVKLEVYIQDIWRMTCVFPVVRFCFTPRQC 918

[Close]
BLAST of ClCG05G011730 vs. NCBI nr
Match: gi|45267888|gb|AAS55787.1| (hypothetical protein [Oryza sativa Japonica Group])

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 85/304 (27.96%), Postives = 134/304 (44.08%), Query Frame = 1 

Query: 27   DEIIWGLDPNGYFSVKNAYKLAVNLKASLGDSSSELLKNKPFWKSAWRLWLPPRVKMLVW 86
            D I W  D  G FSV++AYKLA+ L      SSS   +    W+  W+  +P +V++  W
Sbjct: 1639 DFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAW 1698

Query: 87   KSITDSLPALSNITKKGIAINPEICGIVEPCVVRVDCWDRVLMKLSSTDRDNAAILLWDV 146
            +  ++SL  + N  K+ +    ++CGI +                   ++++A   L   
Sbjct: 1699 RVASNSLATMENKKKRNLE-RFDVCGICD------------------REKEDAGHAL--- 1758

Query: 147  WNYRNCLLHTGNSPVHNVLVGKISVHVEEFCGEMALSRELLGGQEVWVPPVLGSWKINTD 206
                 C     NS   N+  GK  V V  F    A+          W  P  G  K+N D
Sbjct: 1759 -----CRCVHANSLWVNLEKGKYVVSVN-FPKTTAIKHTPGAENRRWERPRNGWMKLNVD 1818

Query: 207  ASWSELEEAGGISWVVRDSFGSVILARCENVALFWSIKFLEALAMIRGLKPLVNYFAQGL 266
             S+    E GGI  ++R+  G+VI + C ++         E  A + GL   +++    L
Sbjct: 1819 GSFDINSEKGGIGMILRNCLGNVIFSSCRSLDSCSGPLEAELHACVEGLHLALHW---TL 1878

Query: 267  LPFVSVESDCVNLINAINHKTPDLSELESFVEEIGSLAASAHVVFFRWCMRSANGLAHRL 326
            LP + VE+DC ++I  +NH   D S L +  +E  SL A    +      RS N ++H L
Sbjct: 1879 LP-IQVETDCSSVIQLLNHPDKDRSVLANIAQEAKSLMAGDRQIAISKVQRSQNVISHFL 1910

Query: 327  ASAA 331
            A+ A
Sbjct: 1939 ANKA 1910

The following BLAST results are available for this feature:
BLAST of ClCG05G011730 vs. TrEMBL
Match NameE-valueIdentityDescription
M5XSK0_PRUPE2.2e-2429.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016553mg PE=4 SV=1[more]
B9FYJ3_ORYSJ2.1e-2228.41Uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_28268 PE=3 SV=1[more]
Q75M12_ORYSJ1.1e-1827.96Uncharacterized protein OS=Oryza sativa subsp. japonica GN=P0431G05.11 PE=4 SV=1[more]
A0A0J8BAU9_BETVU2.4e-1826.71Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g179330 PE=4 S... [more]
C7J4L5_ORYSJ9.0e-1828.06Os07g0501200 protein OS=Oryza sativa subsp. japonica GN=Os07g0501200 PE=4 SV=1[more]
BLAST of ClCG05G011730 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G34320.13.2e-0626.92 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT4G29090.14.1e-0626.80 Ribonuclease H-like superfamily protein[more]
BLAST of ClCG05G011730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|596297302|ref|XP_007227312.1|3.2e-2429.50hypothetical protein PRUPE_ppa016553mg [Prunus persica][more]
gi|222641012|gb|EEE69144.1|3.0e-2228.41hypothetical protein OsJ_28268 [Oryza sativa Japonica Group][more]
gi|645219258|ref|XP_008234850.1|1.9e-2126.24PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume][more]
gi|658039861|ref|XP_008355518.1|4.0e-1926.67PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|45267888|gb|AAS55787.1|1.5e-1827.96hypothetical protein [Oryza sativa Japonica Group][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR026960RVT-Znf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011730.1ClCG05G011730.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 200..332
score: 7.84
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 39..112
score: 8.
NoneNo IPR availablePANTHERPTHR33033FAMILY NOT NAMEDcoord: 73..335
score: 2.7
NoneNo IPR availablePFAMPF13456RVT_3coord: 204..330
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G011730Cucurbita pepo (Zucchini)cpewcgB518
ClCG05G011730Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G011730Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G011730Cucumber (Gy14) v2cgybwcgB217
ClCG05G011730Melon (DHL92) v3.6.1medwcgB420
ClCG05G011730Melon (DHL92) v3.6.1medwcgB427
ClCG05G011730Silver-seed gourdcarwcgB0464
ClCG05G011730Silver-seed gourdcarwcgB0739
ClCG05G011730Cucumber (Chinese Long) v3cucwcgB234
ClCG05G011730Cucumber (Chinese Long) v3cucwcgB241
ClCG05G011730Watermelon (97103) v2wcgwmbB229
ClCG05G011730Wax gourdwcgwgoB438
ClCG05G011730Wax gourdwcgwgoB441
ClCG05G011730Cucumber (Gy14) v1cgywcgB004
ClCG05G011730Cucurbita maxima (Rimu)cmawcgB234
ClCG05G011730Cucurbita maxima (Rimu)cmawcgB407
ClCG05G011730Cucurbita moschata (Rifu)cmowcgB220
ClCG05G011730Cucurbita moschata (Rifu)cmowcgB406
ClCG05G011730Wild cucumber (PI 183967)cpiwcgB236
ClCG05G011730Wild cucumber (PI 183967)cpiwcgB241
ClCG05G011730Cucumber (Chinese Long) v2cuwcgB229
ClCG05G011730Cucumber (Chinese Long) v2cuwcgB233
ClCG05G011730Melon (DHL92) v3.5.1mewcgB427
ClCG05G011730Watermelon (97103) v1wcgwmB286