ClCG05G011450 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G011450
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 13630529 .. 13631023 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCCCAGAGCAAAGAATAGATCAATACAAGTTCCTCCAGTCCAAATGGAAAATCAAGGAGGTTTTTCTTCAAATCAGCGTGGTTGTGGAAGAGGTCTTGGGCGGTGGAACAATTGGATATGTCAAGTTGGTGGAAAAGTAGATCACACTACAACAATCTGTTACCATCATTATAATAAGAAAGTTAAAAATCCTCGGCAACATCAATATTGTGAAAATCTAGGTAATACTCAAAGCTTCAATAATAGTTAGGCTTATAACTTAGCACCGGCCCCTTTTGTTCCAAATTCTATCATGGCAACCTTTGAAACTGTTATCAACCCCAACTGGTATGCTGACAGTGGGGCATCAAATCATGTAGCAGCCAATCCTAATTATTTGAATCCCAAGGTTGAATACACAAGTATTAATAAAGTTATTGTTGGTGATGGCCCCTTTGTCTATTTCATACATTGGAGATTTTGTTGTTCCTTCTATGTCTGGCTCCCTTAA

mRNA sequence

ATGTTGCCCAGAGCAAAGAATAGATCAATACAAGTTCCTCCAGTCCAAATGGAAAATCAAGGAGGTTTTTCTTCAAATCAGCGTGGTTGTGGAAGAGGTCTTGGGCGGTGGAACAATTGGATATGTCAAGTTGGTGGAAAAGTAGATCACACTACAACAATCTGTTACCATCATTATAATAAGAAAGTTAAAAATCCTCGGCAACATCAATATTGTGAAAATCTAGCACCGGCCCCTTTTGTTCCAAATTCTATCATGGCAACCTTTGAAACTGTTATCAACCCCAACTGGTATGCTGACAGTGGGGCATCAAATCATGTAGCAGCCAATCCTAATTATTTGAATCCCAAGGTTGAATACACAAGTATTAATAAAGTTATTGTTGGTGATGGCCCCTTTGTCTATTTCATACATTGGAGATTTTGTTGTTCCTTCTATGTCTGGCTCCCTTAA

Coding sequence (CDS)

ATGTTGCCCAGAGCAAAGAATAGATCAATACAAGTTCCTCCAGTCCAAATGGAAAATCAAGGAGGTTTTTCTTCAAATCAGCGTGGTTGTGGAAGAGGTCTTGGGCGGTGGAACAATTGGATATGTCAAGTTGGTGGAAAAGTAGATCACACTACAACAATCTGTTACCATCATTATAATAAGAAAGTTAAAAATCCTCGGCAACATCAATATTGTGAAAATCTAGCACCGGCCCCTTTTGTTCCAAATTCTATCATGGCAACCTTTGAAACTGTTATCAACCCCAACTGGTATGCTGACAGTGGGGCATCAAATCATGTAGCAGCCAATCCTAATTATTTGAATCCCAAGGTTGAATACACAAGTATTAATAAAGTTATTGTTGGTGATGGCCCCTTTGTCTATTTCATACATTGGAGATTTTGTTGTTCCTTCTATGTCTGGCTCCCTTAA

Protein sequence

MLPRAKNRSIQVPPVQMENQGGFSSNQRGCGRGLGRWNNWICQVGGKVDHTTTICYHHYNKKVKNPRQHQYCENLAPAPFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEYTSINKVIVGDGPFVYFIHWRFCCSFYVWLP

Homology

[Close]

BLAST of ClCG05G011450 vs. TrEMBL
Match: A0A151RW78_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_031575 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-09
Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 1


Query: 16  QMENQGGFSSNQRG---CGRGLGR--WN-----NW-----ICQVGGKVDHTTTICYHHYN 75
           +  N+GG + N RG    GRG GR  WN     NW      CQ+ GK+ H    CY+ YN
Sbjct: 260 RFHNRGG-NWNNRGRFNAGRGNGRSNWNQTGQNNWNQNKPTCQICGKIGHIALNCYYRYN 319

Query: 76  KKVKNPRQHQYCENLAPAP----FVPNSIMATFETVINPNWYADSGASNHVAANPNYLNP 135
           ++ +N   H    N    P        + +AT  TV +P WY DSGAS H+  + + L+ 
Sbjct: 320 QEYQN---HPQANNTQFQPSGYDISETTTLATPSTVQDPLWYPDSGASYHITHDESNLSM 379

Query: 136 KVEYTSINKVIVGDGPFVYFIH 139
           K  YT  + V +G+   ++  H
Sbjct: 380 KSAYTGTDSVNIGNSTGLHISH 397

[Close]

BLAST of ClCG05G011450 vs. TrEMBL
Match: A0A151SEF4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024838 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 16  QMENQGGFSSNQ--------RGCGRG-----LGRWNNWICQVGGKVDHTTTICYHHYNKK 75
           Q  NQG  S+N         RG GRG      GR N   CQV GK+ H    C+H Y+++
Sbjct: 100 QFTNQGRGSNNNGTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 159

Query: 76  VKNPRQHQYCENLAPA--PFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEY 135
              P  +       P     +   I  +   V +  WY DSGA+NH+ ++ N L  K +Y
Sbjct: 160 YTEPNLNHNTNVYNPGNQQQMQAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDY 219

Query: 136 TSINKVIVGDGPFVYFIH 139
           T  +K+ +G+G  +   H
Sbjct: 220 TGQDKIHMGNGQAIGINH 237

[Close]

BLAST of ClCG05G011450 vs. TrEMBL
Match: A0A151U9E7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_020152 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 16  QMENQGGFSSNQ--------RGCGRG-----LGRWNNWICQVGGKVDHTTTICYHHYNKK 75
           Q  NQG  S+N         RG GRG      GR N   CQV GK+ H    C+H Y+++
Sbjct: 234 QFTNQGRGSNNNGTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 293

Query: 76  VKNPRQHQYCENLAPA--PFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEY 135
              P  +       P     +   I  +   V +  WY DSGA+NH+ ++ N L  K +Y
Sbjct: 294 YTEPNLNHNTNVYNPGNQQQMQAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDY 353

Query: 136 TSINKVIVGDGPFVYFIH 139
           T  +K+ +G+G  +   H
Sbjct: 354 TGQDKIHMGNGQAIGINH 371

[Close]

BLAST of ClCG05G011450 vs. TrEMBL
Match: A0A151RQY5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_033540 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.9e-09
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 19  NQGGFSSNQRGCGR---GLGRWNNWI------CQVGGKVDHTTTICYHHYNKKVKNPRQH 78
           N+GG  +N RG GR   G    N+W       CQ+ GK  H    C+  +N+  + P Q 
Sbjct: 261 NRGGRYNNGRGNGRLNWGQTSTNSWNQNNRPQCQICGKHGHLAIDCWQRFNQDFQGPPQA 320

Query: 79  QYCENLAPAPFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEYTSINKVIVG 132
              +    +     + MAT  TV++P WY DSGAS+H+  + + L+ K +YT  ++V +G
Sbjct: 321 NQTQYQGFSQS-DQAFMATPTTVLDPLWYPDSGASHHITNDESNLSVKTDYTGNDRVKIG 380

[Close]

BLAST of ClCG05G011450 vs. TrEMBL
Match: A5BFT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017741 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.9e-09
Identity = 41/125 (32.80%), Postives = 60/125 (48.00%), Query Frame = 1


Query: 19  NQGGFSSN-QRGCGRGLGRWNNW------ICQVGGKVDHTTTICYHHYNKKVKNPRQHQY 78
           N+GGF     +G  +    WN+        CQ+ GK+ H    CY+ ++   + P Q+  
Sbjct: 280 NRGGFRGRGNKGSFQARPPWNSDNQNEKPACQLCGKIGHVVAQCYYRFDHTFQVP-QNLS 339

Query: 79  CENLAPAPFVP-----NSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEYTSINKV 132
             N +P  +       N ++ T E   + NWY DSGASNHV  NP  L    E+   N+V
Sbjct: 340 SRNSSPRAYYSFSPQVNGVIPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQV 399

[Close]

BLAST of ClCG05G011450 vs. NCBI nr
Match: gi|1012335474|gb|KYP46802.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 69.7 bits (169), Expect = 4.9e-09
Identity = 48/142 (33.80%), Postives = 69/142 (48.59%), Query Frame = 1


Query: 16  QMENQGGFSSNQRG---CGRGLGR--WN-----NW-----ICQVGGKVDHTTTICYHHYN 75
           +  N+GG + N RG    GRG GR  WN     NW      CQ+ GK+ H    CY+ YN
Sbjct: 260 RFHNRGG-NWNNRGRFNAGRGNGRSNWNQTGQNNWNQNKPTCQICGKIGHIALNCYYRYN 319

Query: 76  KKVKNPRQHQYCENLAPAP----FVPNSIMATFETVINPNWYADSGASNHVAANPNYLNP 135
           ++ +N   H    N    P        + +AT  TV +P WY DSGAS H+  + + L+ 
Sbjct: 320 QEYQN---HPQANNTQFQPSGYDISETTTLATPSTVQDPLWYPDSGASYHITHDESNLSM 379

Query: 136 KVEYTSINKVIVGDGPFVYFIH 139
           K  YT  + V +G+   ++  H
Sbjct: 380 KSAYTGTDSVNIGNSTGLHISH 397

[Close]

BLAST of ClCG05G011450 vs. NCBI nr
Match: gi|1012364758|gb|KYP75940.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 16  QMENQGGFSSNQ--------RGCGRG-----LGRWNNWICQVGGKVDHTTTICYHHYNKK 75
           Q  NQG  S+N         RG GRG      GR N   CQV GK+ H    C+H Y+++
Sbjct: 234 QFTNQGRGSNNNGTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 293

Query: 76  VKNPRQHQYCENLAPA--PFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEY 135
              P  +       P     +   I  +   V +  WY DSGA+NH+ ++ N L  K +Y
Sbjct: 294 YTEPNLNHNTNVYNPGNQQQMQAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDY 353

Query: 136 TSINKVIVGDGPFVYFIH 139
           T  +K+ +G+G  +   H
Sbjct: 354 TGQDKIHMGNGQAIGINH 371

[Close]

BLAST of ClCG05G011450 vs. NCBI nr
Match: gi|1012342015|gb|KYP53212.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 1


Query: 16  QMENQGGFSSNQ--------RGCGRG-----LGRWNNWICQVGGKVDHTTTICYHHYNKK 75
           Q  NQG  S+N         RG GRG      GR N   CQV GK+ H    C+H Y+++
Sbjct: 100 QFTNQGRGSNNNGTHGRGPHRGRGRGRSAQHFGRGNKQPCQVCGKIGHIAFHCWHRYDQQ 159

Query: 76  VKNPRQHQYCENLAPA--PFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEY 135
              P  +       P     +   I  +   V +  WY DSGA+NH+ ++ N L  K +Y
Sbjct: 160 YTEPNLNHNTNVYNPGNQQQMQAMIAGSQNMVYDDQWYPDSGATNHLTSDLNNLGSKTDY 219

Query: 136 TSINKVIVGDGPFVYFIH 139
           T  +K+ +G+G  +   H
Sbjct: 220 TGQDKIHMGNGQAIGINH 237

[Close]

BLAST of ClCG05G011450 vs. NCBI nr
Match: gi|147862911|emb|CAN81099.1| (hypothetical protein VITISV_017741 [Vitis vinifera])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 41/125 (32.80%), Postives = 60/125 (48.00%), Query Frame = 1


Query: 19  NQGGFSSN-QRGCGRGLGRWNNW------ICQVGGKVDHTTTICYHHYNKKVKNPRQHQY 78
           N+GGF     +G  +    WN+        CQ+ GK+ H    CY+ ++   + P Q+  
Sbjct: 280 NRGGFRGRGNKGSFQARPPWNSDNQNEKPACQLCGKIGHVVAQCYYRFDHTFQVP-QNLS 339

Query: 79  CENLAPAPFVP-----NSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEYTSINKV 132
             N +P  +       N ++ T E   + NWY DSGASNHV  NP  L    E+   N+V
Sbjct: 340 SRNSSPRAYYSFSPQVNGVIPTSEVFSDDNWYPDSGASNHVTPNPENLMKSAEFAGQNQV 399

[Close]

BLAST of ClCG05G011450 vs. NCBI nr
Match: gi|1012333571|gb|KYP44960.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 41/122 (33.61%), Postives = 64/122 (52.46%), Query Frame = 1


Query: 19  NQGGFSSNQRGCGR---GLGRWNNWI------CQVGGKVDHTTTICYHHYNKKVKNPRQH 78
           N+GG  +N RG GR   G    N+W       CQ+ GK  H    C+  +N+  + P Q 
Sbjct: 261 NRGGRYNNGRGNGRLNWGQTSTNSWNQNNRPQCQICGKHGHLAIDCWQRFNQDFQGPPQA 320

Query: 79  QYCENLAPAPFVPNSIMATFETVINPNWYADSGASNHVAANPNYLNPKVEYTSINKVIVG 132
              +    +     + MAT  TV++P WY DSGAS+H+  + + L+ K +YT  ++V +G
Sbjct: 321 NQTQYQGFSQS-DQAFMATPTTVLDPLWYPDSGASHHITNDESNLSVKTDYTGNDRVKIG 380

The following BLAST results are available for this feature:

BLAST of ClCG05G011450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RW78_CAJCA	3.4e-09	33.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SEF4_CAJCA	4.5e-09	31.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151U9E7_CAJCA	4.5e-09	31.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151RQY5_CAJCA	9.9e-09	33.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A5BFT3_VITVI	9.9e-09	32.80	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017741 PE=4 SV=1	[more]

BLAST of ClCG05G011450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012335474\|gb\|KYP46802.1\|	4.9e-09	33.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012364758\|gb\|KYP75940.1\|	6.4e-09	31.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|1012342015\|gb\|KYP53212.1\|	6.4e-09	31.88	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|147862911\|emb\|CAN81099.1\|	1.4e-08	32.80	hypothetical protein VITISV_017741 [Vitis vinifera]	[more]
gi\|1012333571\|gb\|KYP44960.1\|	1.4e-08	33.61	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G011450.1	ClCG05G011450.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G011450	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G011450	Silver-seed gourd	carwcgB0464
ClCG05G011450	Silver-seed gourd	carwcgB0739
ClCG05G011450	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G011450	Watermelon (97103) v2	wcgwmbB229
ClCG05G011450	Wax gourd	wcgwgoB436
ClCG05G011450	Wax gourd	wcgwgoB441
ClCG05G011450	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G011450	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G011450	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G011450	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G011450	Wild cucumber (PI 183967)	cpiwcgB240
ClCG05G011450	Cucumber (Chinese Long) v2	cuwcgB233
ClCG05G011450	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G011450	Watermelon (97103) v1	wcgwmB286
ClCG05G011450	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G011450	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G011450	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G011450	Cucumber (Gy14) v2	cgybwcgB217