ClCG05G011400 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G011400
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein LENGTH=746
LocationCG_Chr05 : 13495392 .. 13500322 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCCAACAGAAATAAAAATTCTGCCTACTTTCATAAAGTGTGTATGGCTCGTAGGCGATTCAACTTCATATGAAAGATACTGGATACCCAAGGTACTTATTAATATTCTAACAGCAACATTGAAAAGGCTTTTATTGATTACTTTTCTGATATTTACCGGGGTTAGTCTGAATGTTCTTGGCTAATTGGAAACTTAAATTGGAGGCCTATATCTGAAGCGCAAGCTTTTACTCTCATACAGTCCTTCTTACAGCCTGAAGTTCTAAACAGTATCAAATTACTTGGAAGCAATAAGACTTCGGGCCCTGACAATTTCACTATAGAATTCTTCAAAAAGTTTTGGAACATATTCATGTGTTCCATGACTCTTTCTTGAACAAGATTGTGAATAAATCTCTAAATGCCACATACATTGCCTTAATTCTAAAGAAGTCTCATTGCATTAGAGTATCTGACTTCCGCCCCATTAGTTTTACAACCAGAGTATACAAAATCCTGGCTAAAGTCCTATTAGAAAGATTAAAATTGGTCTTACCCTTAACAAGCTATGCAACAGTTTTCTTTTGTGCACGGTAGAAAAATTTTTGATCCGACTCTGATAGCTAATGAAGTTGTAGACTTTTGGCAATGTAGCAAAAAAAAAAAGGGGTGGTTATCAAACTTGATATAGAAAAAGCCTTTGACAAAGTTAACTGGGCTTTCCTACTATCTATGCTCCAAGTAAAAGGCTTCTTGGAAATATGGATTCACTGGATTAAAGCTTGCATTTATTTTGTTAACTATTCAATTATTCTAAATGGAAAACCGAGAGGTTATATCCAAGCAACTAGAGGTGTCCGACAAGAAGACTCCTTATCCCCCTTCCTATTATCGAAGAGGCTAAACAAAAAGATCTCATCTCTAGTTGTCGCTTTGAAAATGAACTCAACCATCTTCTATTTGCTGATGACATATTGCTTTTCTCTAGTACAGAGGTTGAAAAACTCAAGAATCTTCGCTATATTATATCTGCTTTTGAAAAGGCTTCAGAATTAAAAATTAACTTCTAGAAATCCTCCTTTTCTAAAATTAATATCGATGCTGATTTCATTGCTCGGGTTGAGAACATCTGGAGCTACACACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCAAATCACATGCTTTCCGGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAAGAGGACATTTAACTCTGCTACAAACCATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAAGCTCATGTCTCCATTTACAAAGAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTCTGAGAAAAATGATGCATCACACCTTGTCCAACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGGTATTGACAATCTAAAAGTCACAAATTCTACTCCATTATGCAAGTGGATATGGAGATATTTAAATGAAAAATAAAATCTCTGGAGAATTGCTATTGATGCCAAGTATAAAGTTGAACAACCGAGATCCTTTCTGAGTATTTGTAGCTACAAAAGCTCAAGATCCCTCTAGCTCAACATTGCCAAACTACAACATTATGTTCTTAATCACACTATCTGGCATATTGTGGATGGTAATGAAACTCTTTTTTGGTACCAAAATTGGACTAATGTTGGTTGTGTCTATCAAACTGCCAGCAGATTTTTTGCTCTAACTAATAAACCGTTGATATCTATTCAAGATGCTTTGGACTCTGAAGCCCATTGTTGGAGATTATTCCCTCGTCAGCCTTTATTATATAGGGAATTAGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGAAAAGATTTTCTACAATTTATCATCGGATGGTTATTTCTCAGTTAAAGCCATGAAAATTCTTCCTTTGGAGTATCTCCAAAATGGCCTCAACACTATGGATAAATATCAAAAAAGAACCCATCTATTTATCTTAATCCTAACTAGTGTGTTTTGTGCAGGAAAAAATCAGAATCTTTAGAGCACATCTTCATCTCATGTATCTTTACACGAAATATTTGGGATCGCTTATTACTAGGGGCCACTGCACAGCCAATATACTCCATAAATGAGCTTTGGCCCCAACTCAAAACGACTACAAAAGATCGTATCTTAAAGAGTAACATCATGACTGTCATTTTATGGTGTATTTGGCTCGAGCAGAATAAAAGAACTTTCCAAGGCATTGATAGAAATCACAGCCATCTCTGGGACGATATCATCTTGATTGTTGCCTTGAGGAGTACAAAAGCTCCTCTTTTTGTAATTATGATGTCTCTGCCATTGCTTTGAACTGGAAGCTTTTTTCGTAGCCCCTCTGCCTTTGTTGTTTCTGTTTTGATCTTGAGCTTTCCTCTAGCTCTTTGTATATACTCTCTTTCATTTGAATGAAGATTGTTAATGGTATCGGGAGTATGAGGAGGGTGCTAAGGAGGTGTCAACCTAGTTGGGATGTCTCGGTGCACCCCCTAATTTCTATTTCCTCTAGTATCATGTTCAAAAAAAAAAATCCAAAAAAATGGTAGAAAACACCTATAATGGATGATTTTTAAAAGCAGATCATTAATAATCGATATCTACACATGGAAAGTCAAATGTCTTATATTATGATTAATAATTACCAAACATTCAATCCTTATTGAGAGTTACTAATGCAACCAGTTATTTGTTTTTGCAAAATTGAGTATAGTCTAATTGACACAAAATTATATTAGCAATCAAAAAGTTTGTCGTTCGAATCTCTAATCCTTTTGTATTGAAAATATCAGTTATTTGTTGTTTACCATAAACAATTTGGATGATGTGGAAATTTTGTCTCAAAAGCATGTGACTCTAGCCAATCACATTGAATAAAAAATATGAATTGTATTGAGTTTTAAGACATTGTTTTAACTTAAAAGTATAAAGGTACGGACGTTTATCTTTTATGGCTTGTTTCGTATGCTCAACTTTTTTTTATTTTTGTTTTTTTTTTTTTTTATTCAATGTCTCTATTTGGTTGGCTTATTTATATATTATAAAAAAGATTAAATTATTTAAAAAATTAAAAAATACTCTTAAAATTTTGGAAAGTTTCAACAATAATATTCTTAAACTTTAAAAAAATTTAAAATTAAAGAATATCCATATCATAATTTTGGATGGAAATCGTTAATATTATGTTTCAAATATACTTCTAACTTCCAAGAGTTATAGTAATATCTTTAAACTTTAAAATGAAAATAGTTATAAAATATCTCACTGTTAGATATAGATTTAAACCATTAGTAACTCATTTAAAATATACCTCATAAACCTTCCAGCCGTTGCATTAGTGGACCTTTAAAAACAAATTTTTACTATTAATATACGGACAAAAATGGTTTATCTACCTTGTTCACCTCTCTTTCTATTTCAGTTGTCTATGACCTAACAATTCCTTCTTTTTTTTCTCTCTTCTTCAATACCCTCTTACTTTCCTTCTTCCATTTTCTAGTCTCTAAAACTATCTCGTTCAATCAAGGTATATAGGCTATGGCATGAAGAAAAAGAATAATGGAACAGAAACCTTAAGACTTAAAAGTTTAAATAAGGTTTTGTGTTAGTAGTTAAGCATGTGTTGCTAAGGGTGTATTTGGAATACATTTTTAAGTGTTTAATTTAAAAAAGTAAGTCATTTTGGAAAAAAAAAATTGGAGTGTTTGGCAACCACTCAAAATAGATTTTGAAGTGTATTTTAAGTGGTACTTCTTATCAAAAGAGTTTAAATAAAAATGAGTTTTTTGAAAAACACTTTTTTCTCAAGTCAATCCAAACGGGCCTTAAATCGTTAGATTTTAATACACAAAAAAGGACATGTTATGAATTTGGATCCTAATTTTGAGAAAAGCCAAGTAGGAAAAAAATAAAACATGTGTGTTATAGAAAAAATTAGTATGACCGATGAGAGAGCCCGTGAGAGCTCAGTGGGACTCGTGAGTTGAGAGCTAGGAGAGAGCTCGAGCTTGAGGTAAGCCTAAAGGAACTCAAAGGAAGCCTAGGAGAGAGCTCTTAAGTGGAGCTAAGAATCTAGGAGAGAGCTTAATAGAACTCACGGGAGAGCCCAAGAGAGCTTAGAGAGAGCTCAACGGGACCCATGAGGTAAGTTTAGTGGAGAGCTCAGAGAAGCCTACGAGACAGCTCAAGAGGACGCACGAGAGAGGTTAACCCGTGAGGTAAGCTTAGTGAAGAGCTTATAGGAGCCTAGGAGAGAGAGCTCTAGAGGACCTGCTAGAGAGCCTAACCCGTGAGGTAATCTTAGTGGAGAGCTTAGAGGATCCTGGGAGAGAGCTCAAAAGAACTCATGGGAGAGCCTGAGAGAGTTCAGTGGGACTCGTTAGGTAAGCTTAGATGACCCATGGAAGATCCTAGTAAGCTCGATTCAATTGAAAAAGCAAGTCGATCTAAGAAAATAGGTCATTCTGAGAAAGGAGGTCGACCTGACGAGTCGAGCTAAGAAACGAGGTCAACCTAAGAAAGGAGGTCAACCTGGTAGCTCAAGCTAAGAAATGAGATCGATTTAAGAAAGGAGGTTGACCTGGTAAATCGAGCTAGGAAAGCAAGTTATGCATGGTTTTGTCATGCATTGGCTATGTATTGTGGTCAGATAACCAGATGTTAAAGGTTTACCCAAGAGTCAAACACATTTTATGGTTGAGGGGTGTAACGACTTTAACAATAATGACTAGATGGGTAACGGTTGAGGGAAGTCTGATAGTGGCTTGGAAGCTGAAGGGTCATGTCAGCTTTAGTTATGAAGAGCTCGACCTATATAATCTTTAA

mRNA sequence

ATGACCCCAACAGAAATAAAAATTCTGCCTACTTTCATAAAGTGTGTATGGCTCGTAGGCGATTCAACTTCATATGAAAGATACTGGATACCCAAGTCTGAATGTTCTTGGCTAATTGGAAACTTAAATTGGAGGCCTATATCTGAAGCGCAAGCTTTTACTCTCATACAGTCCTTCTTACAGCCTGAAATTGTGAATAAATCTCTAAATGCCACATACATTGCCTTAATTCTAAAGAAGTCTCATTGCATTAGAGTATCTGACTTCCGCCCCATTAGTTTTACAACCAGAGCTAAACAAAAAGATCTCATCTCTAGTTGTCGCTTTGAAAATGAACTCAACCATCTTCTATTTGCTGATGACATATTGCTTTTCTCTAGTACAGAGAACATCTGGAGCTACACACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCAAATCACATGCTTTCCGGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAAGAGGACATTTAACTCTGCTACAAACCATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAAGCTCATGTCTCCATTTACAAAGAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTCTGAGAAAAATGATGCATCACACCTTGTCCAACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGATGCTTTGGACTCTGAAGCCCATTGTTGGAGATTATTCCCTCGTCAGCCTTTATTATATAGGGAATTAGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGAAAAGATTTTCTACAATTTATCATCGGATGGTTATTTCTCAGTTAAAGCCATGAAAATTCTTCCTTTGGAGAAAAAATCAGAATCTTTAGAGCACATCTTCATCTCATGTATCTTTACACGAAATATTTGGGATCGCTTATTACTAGGGGCCACTGCACAGCCAATATACTCCATAAATGAGCTTTGGCCCCAACTCAAAACGACTACAAAAGATCGTATCTTAAAGAGTAACATCATGACTGTCATTTTATGGTGTATTTGGCTCGAGCAGAATAAAAGAACTTTCCAAGGCATTGATAGAAATCACAGCCATCTCTGGGACGATATCATCTTGATTGTTGCCTTGAGGAAGCTCAGTGGGACTCGTGAGTTGAGAGCTAGGAGAGAGCTCGAGCTTGAGAACTCACGGGAGAGCCCAAGAGAGCTTAGAGAGAGCTCAACGGGACCCATGAGAGCTTATAGGAGCCTAGGAGAGAGAGCTCTAGAGGACCTGCTAGAGAGCCTAACCCGTGAGGTCATTCTGAGAAAGGAGGTCGACCTGACGAGTCGAGCTAAGAAACGAGGTCAACCTAAGAAAGGAGGTCAACCTGATAACCAGATGTTAAAGGTTTACCCAAGAGTCAAACACATTTTATGGTTGAGGGGTGTAACGACTTTAACAATAATGACTAGATGGGTAACGGTTGAGGGAAGTCTGATAGTGGCTTGGAAGCTGAAGGGTCATGTCAGCTTTAGTTATGAAGAGCTCGACCTATATAATCTTTAA

Coding sequence (CDS)

ATGACCCCAACAGAAATAAAAATTCTGCCTACTTTCATAAAGTGTGTATGGCTCGTAGGCGATTCAACTTCATATGAAAGATACTGGATACCCAAGTCTGAATGTTCTTGGCTAATTGGAAACTTAAATTGGAGGCCTATATCTGAAGCGCAAGCTTTTACTCTCATACAGTCCTTCTTACAGCCTGAAATTGTGAATAAATCTCTAAATGCCACATACATTGCCTTAATTCTAAAGAAGTCTCATTGCATTAGAGTATCTGACTTCCGCCCCATTAGTTTTACAACCAGAGCTAAACAAAAAGATCTCATCTCTAGTTGTCGCTTTGAAAATGAACTCAACCATCTTCTATTTGCTGATGACATATTGCTTTTCTCTAGTACAGAGAACATCTGGAGCTACACACCAACCACACTTCCTATTTTTTACTTGGGTATGCCATTAGGGGGAAATCCCAAATCACATGCTTTCCGGCTCCCTATTGTTGAAAAGATTGATAAGAAATTAGACTCTTGGAAATTTTCATACATCTCTAAAAGAGGACATTTAACTCTGCTACAAACCATTCTTGGTAACCTTCCTACTTACTATCTATCGTTATTTCAAGCTCATGTCTCCATTTACAAAGAAATTGAGAAACTGATGAGGAATTTTCTTTGGGAAGGTTCTGAGAAAAATGATGCATCACACCTTGTCCAACGGGATGTTGTTACCTCTCCTAAATCTATGGGTGGCTTGGATGCTTTGGACTCTGAAGCCCATTGTTGGAGATTATTCCCTCGTCAGCCTTTATTATATAGGGAATTAGAGGCATGGAACTCCCTTACTAGTGGTTGGAGACAGCCAACCATTCCAACCAATCCTACTGATATAGAAAAGATTTTCTACAATTTATCATCGGATGGTTATTTCTCAGTTAAAGCCATGAAAATTCTTCCTTTGGAGAAAAAATCAGAATCTTTAGAGCACATCTTCATCTCATGTATCTTTACACGAAATATTTGGGATCGCTTATTACTAGGGGCCACTGCACAGCCAATATACTCCATAAATGAGCTTTGGCCCCAACTCAAAACGACTACAAAAGATCGTATCTTAAAGAGTAACATCATGACTGTCATTTTATGGTGTATTTGGCTCGAGCAGAATAAAAGAACTTTCCAAGGCATTGATAGAAATCACAGCCATCTCTGGGACGATATCATCTTGATTGTTGCCTTGAGGAAGCTCAGTGGGACTCGTGAGTTGAGAGCTAGGAGAGAGCTCGAGCTTGAGAACTCACGGGAGAGCCCAAGAGAGCTTAGAGAGAGCTCAACGGGACCCATGAGAGCTTATAGGAGCCTAGGAGAGAGAGCTCTAGAGGACCTGCTAGAGAGCCTAACCCGTGAGGTCATTCTGAGAAAGGAGGTCGACCTGACGAGTCGAGCTAAGAAACGAGGTCAACCTAAGAAAGGAGGTCAACCTGATAACCAGATGTTAAAGGTTTACCCAAGAGTCAAACACATTTTATGGTTGAGGGGTGTAACGACTTTAACAATAATGACTAGATGGGTAACGGTTGAGGGAAGTCTGATAGTGGCTTGGAAGCTGAAGGGTCATGTCAGCTTTAGTTATGAAGAGCTCGACCTATATAATCTTTAA

Protein sequence

MTPTEIKILPTFIKCVWLVGDSTSYERYWIPKSECSWLIGNLNWRPISEAQAFTLIQSFLQPEIVNKSLNATYIALILKKSHCIRVSDFRPISFTTRAKQKDLISSCRFENELNHLLFADDILLFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGLDALDSEAHCWRLFPRQPLLYRELEAWNSLTSGWRQPTIPTNPTDIEKIFYNLSSDGYFSVKAMKILPLEKKSESLEHIFISCIFTRNIWDRLLLGATAQPIYSINELWPQLKTTTKDRILKSNIMTVILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVALRKLSGTRELRARRELELENSRESPRELRESSTGPMRAYRSLGERALEDLLESLTREVILRKEVDLTSRAKKRGQPKKGGQPDNQMLKVYPRVKHILWLRGVTTLTIMTRWVTVEGSLIVAWKLKGHVSFSYEELDLYNL
Homology
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BLAST of ClCG05G011400 vs. Swiss-Prot
Match: RNHX1_ARATH (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-08
Identity = 28/86 (32.56%), Postives = 47/86 (54.65%), Query Frame = 1 

Query: 161 IVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLW 220
           I+E++  ++  W+   +S  G LTL + +L ++P + +S      SI   +++L R FLW
Sbjct: 16  ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75

Query: 221 EGSEKNDASHLVQRDVVTSPKSMGGL 247
             + +    HLV+   V SPK  GGL
Sbjct: 76  GSTAEKKKQHLVKWSKVCSPKKEGGL 101

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BLAST of ClCG05G011400 vs. TrEMBL
Match: A5BV95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.3e-25
Identity = 57/123 (46.34%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 124  LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 183
            L SS  +++    +  P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +
Sbjct: 1357 LLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRI 1416

Query: 184  TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 243
            TL+Q+ L ++P+Y+LSLF+   SI  +IEK+ RNFLW G+ +    HLV+ +VV+ PK +
Sbjct: 1417 TLIQSCLSHIPSYFLSLFKIPASIASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKEL 1476

Query: 244  GGL 247
            GGL
Sbjct: 1477 GGL 1479

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BLAST of ClCG05G011400 vs. TrEMBL
Match: A5BV95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-02
Identity = 27/95 (28.42%), Postives = 47/95 (49.47%), Query Frame = 1 

Query: 319  ESLEHIFISCIFTRNIWDRL--LLGATAQPIYSINEL----WPQLKTTTKDRILKSNIMT 378
            ES++H+F+ C  T  +W++L  L G    P  S  ++    +  L  + + + L      
Sbjct: 1654 ESIDHLFLHCPVTIGLWNKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACL 1713

Query: 379  VILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
             ++W +W E+NKR F+   R+   LWD I+    L
Sbjct: 1714 TLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTL 1748


HSP 2 Score: 45.1 bits (105), Expect = 3.3e-01
Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 64   IVNKSLNATYIALILKKSHCIRVSDFRPISFTT 97
            ++N+S NAT+IAL+ KKS  +++SD+RPIS  T
Sbjct: 1109 VINQSTNATFIALVPKKSQSVKISDYRPISLVT 1141


HSP 3 Score: 124.4 bits (311), Expect = 4.3e-25
Identity = 56/123 (45.53%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 124 LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 183
           L SS  +++    +  P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +
Sbjct: 392 LLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRI 451

Query: 184 TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 243
           TL+Q+ L ++P+Y+LSLF+   S+  +IEK+ RNFLW G+ +    HLV+ +VV+ PK +
Sbjct: 452 TLIQSCLSHIPSYFLSLFKIPASVASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKEL 511

Query: 244 GGL 247
           GGL
Sbjct: 512 GGL 514

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BLAST of ClCG05G011400 vs. TrEMBL
Match: A5BQI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-02
Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 1 

Query: 319 ESLEHIFISCIFTRNIWDRL--LLGATAQPIYSINEL----WPQLKTTTKDRILKSNIMT 378
           ES++H+F+ C  T  +W++L  + G    P  S  ++    +  L  + + + L      
Sbjct: 757 ESIDHLFLHCPVTIGLWNKLFKMAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACL 816

Query: 379 VILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
            ++W +W E+NKR F+   R+   LWD I+    L
Sbjct: 817 TLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTL 851


HSP 2 Score: 45.1 bits (105), Expect = 3.3e-01
Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 64  IVNKSLNATYIALILKKSHCIRVSDFRPISFTT 97
           ++N+S NAT+IAL+ KKS  +++SD+RPIS  T
Sbjct: 144 VINQSTNATFIALVPKKSQSVKISDYRPISLVT 176


HSP 3 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 56/123 (45.53%), Postives = 85/123 (69.11%), Query Frame = 1 

Query: 124  LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 183
            L SS  +++    +  P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +
Sbjct: 1451 LLSSLTSVFYCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRI 1510

Query: 184  TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 243
            TL+Q+ L ++P+Y+LSLF+   SI  +IEK+  NFLW G+ +    HLV+ +VV+ PK +
Sbjct: 1511 TLIQSCLSHIPSYFLSLFKISASIASKIEKMQGNFLWSGAREGKKDHLVKWEVVSRPKEL 1570

Query: 244  GGL 247
            GGL
Sbjct: 1571 GGL 1573

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BLAST of ClCG05G011400 vs. TrEMBL
Match: A5C9Z3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 5.1e-02
Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 1 

Query: 319  ESLEHIFISCIFTRNIWDRL--LLGATAQPIYSINEL----WPQLKTTTKDRILKSNIMT 378
            ES++H+F+ C  T  +W++L  L G    P  S  ++    +  L  + + + L      
Sbjct: 1816 ESIDHLFLHCPVTIGLWNKLFKLAGLVWVPPRSFEDMLVIAFKGLGNSLRGKTLCQVACL 1875

Query: 379  VILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
             ++W +W E+N R F+   R+   LWD I+   +L
Sbjct: 1876 TLVWIVWQERNNRIFEDKGRSEETLWDLILFYSSL 1910


HSP 2 Score: 43.9 bits (102), Expect = 7.3e-01
Identity = 18/33 (54.55%), Postives = 26/33 (78.79%), Query Frame = 1 

Query: 64   IVNKSLNATYIALILKKSHCIRVSDFRPISFTT 97
            ++N+S NAT+IAL+ KKS   ++SD+RPIS  T
Sbjct: 1203 VINQSTNATFIALVPKKSQSFKISDYRPISLVT 1235


HSP 3 Score: 121.3 bits (303), Expect = 3.6e-24
Identity = 68/183 (37.16%), Postives = 108/183 (59.02%), Query Frame = 1 

Query: 76  LILKKSHCIRVSDFRPISFTTRA-KQKDLISSCRFENELNHLL------FAD-----DIL 135
           ++ KKS   ++S +RPIS  T   K    + S R    L+  +      F +     D++
Sbjct: 1   MVPKKSQTFKISYYRPISLVTSLYKIIAKVLSGRLRKVLHETISGFQGAFVEGRHILDVV 60

Query: 136 LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 195
           L ++         +  P+ YLG PLGGNPK+  F  P+VE+I ++LD WK +++S  G +
Sbjct: 61  LIANEVVDEKRRVSEWPLSYLGPPLGGNPKTIGFWDPVVERISRRLDGWKKAFLSLGGRI 120

Query: 196 TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 247
           TL+Q+ L ++P+Y+LSLF+   SI  +IEK+ R+FLW G+E+    HL++  VV+ PK +
Sbjct: 121 TLIQSCLSHIPSYFLSLFKIPTSIALKIEKMQRDFLWSGAEEGKKDHLIRWYVVSRPKEL 180

[Close]
BLAST of ClCG05G011400 vs. TrEMBL
Match: A5AKV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008255 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 4.7e-24
Identity = 53/107 (49.53%), Postives = 80/107 (74.77%), Query Frame = 1 

Query: 140 PIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYLS 199
           P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +TL+Q+ L ++P+Y+LS
Sbjct: 235 PLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRITLIQSCLSHIPSYFLS 294

Query: 200 LFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGL 247
           LF+  VSI  +IEK+ R+FLW G+ +    HL++ +VV+ P+ MGGL
Sbjct: 295 LFKIPVSIASKIEKMQRDFLWSGAGEGKRDHLIRWEVVSRPREMGGL 341

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BLAST of ClCG05G011400 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo])

HSP 1 Score: 128.6 bits (322), Expect = 3.2e-26
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 1 

Query: 139 LPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTILGNLPTYYL 198
           LP  YLG+PLGGNP+S +F    +E I KKL+ WK+S ISKRG LTLL+  L +LPTY L
Sbjct: 204 LPFNYLGVPLGGNPRSRSFWGQTIECIHKKLNGWKYSQISKRGRLTLLKASLSSLPTYQL 263

Query: 199 SLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGL 247
           S F+A VS+YKEIEK  R+FLW GSE    +HLV   + TSPK +GGL
Sbjct: 264 STFKAPVSVYKEIEKHWRDFLWGGSEDKQNAHLVNWRICTSPKELGGL 311

[Close]
BLAST of ClCG05G011400 vs. NCBI nr
Match: gi|659093714|ref|XP_008447678.1| (PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 5.5e-26
Identity = 80/209 (38.28%), Postives = 106/209 (50.72%), Query Frame = 1 

Query: 113 LNHLLFADDILLFSSTENI----------------------------------------- 172
           ++H+LFADDILLF    ++                                         
Sbjct: 28  ISHILFADDILLFVEDNDLYLKNLRMAISLFEKASGLKINLSKSVMVPVNVPWPRALECA 87

Query: 173 --WSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHLTLLQTI 232
             W  +  TLP+ YLG+PLGGNPKS  F   I ++I KKL +WK+++ISK G LTL+++ 
Sbjct: 88  SSWEISCHTLPLTYLGVPLGGNPKSKLFWRNIEDRIQKKLSNWKYAHISKGGRLTLIKST 147

Query: 233 LGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSMGGL--- 270
           L +LP Y LS+FQA  S YK IEKL RNFLW+GS  +  SHL+   +VT PK  G L   
Sbjct: 148 LSSLPIYQLSVFQAPSSTYKNIEKLWRNFLWKGSCGSKGSHLINWAIVTKPKEEGELGIS 207

[Close]
BLAST of ClCG05G011400 vs. NCBI nr
Match: gi|147784237|emb|CAN75040.1| (hypothetical protein VITISV_026478 [Vitis vinifera])

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 57/123 (46.34%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 124  LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 183
            L SS  +++    +  P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +
Sbjct: 1357 LLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRI 1416

Query: 184  TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 243
            TL+Q+ L ++P+Y+LSLF+   SI  +IEK+ RNFLW G+ +    HLV+ +VV+ PK +
Sbjct: 1417 TLIQSCLSHIPSYFLSLFKIPASIASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKEL 1476

Query: 244  GGL 247
            GGL
Sbjct: 1477 GGL 1479

[Close]
BLAST of ClCG05G011400 vs. NCBI nr
Match: gi|147784237|emb|CAN75040.1| (hypothetical protein VITISV_026478 [Vitis vinifera])

HSP 1 Score: 48.9 bits (115), Expect = 3.3e-02
Identity = 27/95 (28.42%), Postives = 47/95 (49.47%), Query Frame = 1 

Query: 319  ESLEHIFISCIFTRNIWDRL--LLGATAQPIYSINEL----WPQLKTTTKDRILKSNIMT 378
            ES++H+F+ C  T  +W++L  L G    P  S  ++    +  L  + + + L      
Sbjct: 1654 ESIDHLFLHCPVTIGLWNKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACL 1713

Query: 379  VILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
             ++W +W E+NKR F+   R+   LWD I+    L
Sbjct: 1714 TLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTL 1748


HSP 2 Score: 45.1 bits (105), Expect = 4.7e-01
Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 64   IVNKSLNATYIALILKKSHCIRVSDFRPISFTT 97
            ++N+S NAT+IAL+ KKS  +++SD+RPIS  T
Sbjct: 1109 VINQSTNATFIALVPKKSQSVKISDYRPISLVT 1141


HSP 3 Score: 124.4 bits (311), Expect = 6.1e-25
Identity = 56/123 (45.53%), Postives = 86/123 (69.92%), Query Frame = 1 

Query: 124 LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 183
           L SS  +++    +  P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +
Sbjct: 392 LLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRI 451

Query: 184 TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 243
           TL+Q+ L ++P+Y+LSLF+   S+  +IEK+ RNFLW G+ +    HLV+ +VV+ PK +
Sbjct: 452 TLIQSCLSHIPSYFLSLFKIPASVASKIEKMQRNFLWSGAGEGKKDHLVRWEVVSRPKEL 511

Query: 244 GGL 247
           GGL
Sbjct: 512 GGL 514

[Close]
BLAST of ClCG05G011400 vs. NCBI nr
Match: gi|147821641|emb|CAN70431.1| (hypothetical protein VITISV_030910 [Vitis vinifera])

HSP 1 Score: 48.1 bits (113), Expect = 5.6e-02
Identity = 26/95 (27.37%), Postives = 47/95 (49.47%), Query Frame = 1 

Query: 319 ESLEHIFISCIFTRNIWDRL--LLGATAQPIYSINEL----WPQLKTTTKDRILKSNIMT 378
           ES++H+F+ C  T  +W++L  + G    P  S  ++    +  L  + + + L      
Sbjct: 757 ESIDHLFLHCPVTIGLWNKLFKMAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVACL 816

Query: 379 VILWCIWLEQNKRTFQGIDRNHSHLWDDIILIVAL 408
            ++W +W E+NKR F+   R+   LWD I+    L
Sbjct: 817 TLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTL 851


HSP 2 Score: 45.1 bits (105), Expect = 4.7e-01
Identity = 18/33 (54.55%), Postives = 27/33 (81.82%), Query Frame = 1 

Query: 64  IVNKSLNATYIALILKKSHCIRVSDFRPISFTT 97
           ++N+S NAT+IAL+ KKS  +++SD+RPIS  T
Sbjct: 144 VINQSTNATFIALVPKKSQSVKISDYRPISLVT 176


HSP 3 Score: 122.5 bits (306), Expect = 2.3e-24
Identity = 56/123 (45.53%), Postives = 85/123 (69.11%), Query Frame = 1 

Query: 124  LFSSTENIWSYTPTTLPIFYLGMPLGGNPKSHAFRLPIVEKIDKKLDSWKFSYISKRGHL 183
            L SS  +++    +  P+ YLG+PLGGNPK+  F  P+VE+I ++LD WK +Y+S  G +
Sbjct: 1451 LLSSLTSVFYCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAYLSLGGRI 1510

Query: 184  TLLQTILGNLPTYYLSLFQAHVSIYKEIEKLMRNFLWEGSEKNDASHLVQRDVVTSPKSM 243
            TL+Q+ L ++P+Y+LSLF+   SI  +IEK+  NFLW G+ +    HLV+ +VV+ PK +
Sbjct: 1511 TLIQSCLSHIPSYFLSLFKISASIASKIEKMQGNFLWSGAREGKKDHLVKWEVVSRPKEL 1570

Query: 244  GGL 247
            GGL
Sbjct: 1571 GGL 1573

The following BLAST results are available for this feature:
BLAST of ClCG05G011400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RNHX1_ARATH5.2e-0832.56Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 P... [more]
BLAST of ClCG05G011400 vs. TrEMBL
Match NameE-valueIdentityDescription
A5BV95_VITVI3.3e-2546.34Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1[more]
A5BV95_VITVI2.3e-0228.42Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1[more]
A5BQI4_VITVI3.9e-0227.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1[more]
A5C9Z3_VITVI5.1e-0227.37Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009132 PE=4 SV=1[more]
A5AKV7_VITVI4.7e-2449.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008255 PE=4 SV=1[more]
BLAST of ClCG05G011400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130833|ref|XP_008465376.1|3.2e-2659.26PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo][more]
gi|659093714|ref|XP_008447678.1|5.5e-2638.28PREDICTED: uncharacterized protein LOC103490087 [Cucumis melo][more]
gi|147784237|emb|CAN75040.1|4.7e-2546.34hypothetical protein VITISV_026478 [Vitis vinifera][more]
gi|147784237|emb|CAN75040.1|3.3e-0228.42hypothetical protein VITISV_026478 [Vitis vinifera][more]
gi|147821641|emb|CAN70431.1|5.6e-0227.37hypothetical protein VITISV_030910 [Vitis vinifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005622 intracellular
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0043167 ion binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G011400.1ClCG05G011400.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G011400Cucumber (Gy14) v1cgywcgB640
ClCG05G011400Cucurbita maxima (Rimu)cmawcgB234
ClCG05G011400Cucurbita maxima (Rimu)cmawcgB407
ClCG05G011400Cucurbita moschata (Rifu)cmowcgB220
ClCG05G011400Cucurbita moschata (Rifu)cmowcgB406
ClCG05G011400Wild cucumber (PI 183967)cpiwcgB240
ClCG05G011400Cucumber (Chinese Long) v2cuwcgB233
ClCG05G011400Melon (DHL92) v3.5.1mewcgB427
ClCG05G011400Watermelon (97103) v1wcgwmB286
ClCG05G011400Cucurbita pepo (Zucchini)cpewcgB518
ClCG05G011400Cucurbita pepo (Zucchini)cpewcgB560
ClCG05G011400Bottle gourd (USVL1VR-Ls)lsiwcgB332
ClCG05G011400Cucumber (Gy14) v2cgybwcgB217
ClCG05G011400Melon (DHL92) v3.6.1medwcgB417
ClCG05G011400Silver-seed gourdcarwcgB0497
ClCG05G011400Silver-seed gourdcarwcgB0739
ClCG05G011400Cucumber (Chinese Long) v3cucwcgB241
ClCG05G011400Watermelon (97103) v2wcgwmbB229
ClCG05G011400Wax gourdwcgwgoB436
ClCG05G011400Wax gourdwcgwgoB441