ClCG05G010860 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G010860
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	AAR2 family protein
Location	CG_Chr05 : 12378187 .. 12379261 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTGTTGCCACTAAGTTTCAATCTATGCCTCTTGGATGTTGTCTGGATGTACCAAGAAATATCTATGGTGTAAGGAGACTTGTATGAATGAATTATTTCTCATGGATGAGGCAAGTTCTTCAACTTGTAGATGGTTTTCTCAACCATAACCTCATTTCATGCCTTAGAACCCTTTTCCTATTTCTAGCACCATCCAATCTTAAGCAAAGTCTTATCAAGTGCTTCATATTCTTTCGGGGACTCGTTTTACAATTTAAAGTTTTACCAACTCTGTGATCCCATCTTTCTCGATCTAGGCAGGGCTGTGACTAGCAACTTTTGTGGGGAAAAAAATCTTATTCTTTAATTTGTTTAGAGATGTTAAAGAATATTCTACCGTAAATCGTATTTATCATTTTTAGAAGCTTACCAAGCTTTTCATTTTTTCAAAATTGTATTTTTGGAACCATTCCATCATTTTCTTTAGAACATATTATTTGACATTAGTTAGTAGCGCATGCTGTGACTTTGTGTTAATGAATCGAGGGTCAAGAATCTTCCTTTTTTTCCCCTCACAAACTACAACGACAGAGAGTTCATTTATCAATCAACTTTGATAGACTCACTCAGTGAAATAGTGATTTATAACTTGGGCCGTTTATCTCATGAAATTATATTATTCTCTTTGAATTTTTGTGCTGGAGTTTGTCCTGTCTACTATGTAATTCCATTATGCTTTAATATAACCATAAAAAATTATTAATGCACCAAATTCCGTTGTCACAGACAAGGAAACTCAAGGAACTGTTGGAGAACAGATTGGGCTGGAAATTTCAGAACAATATTGCAACTGATGGAATTTCCTTTGATGAAGATGATGAGGTCAGTCAAAATGTTCACATCGCAGTAATCTTTCTGTGCTCTCTCTCTCTCTCACATAGAGGCCTATTTACTTTTGCAGTTTGCTCCTGTAGTTGTGAGGATGGATGATTCTGAGTCGTCATGAGGTCTTATAAGTCCTTATAAAAAGGTTAAATATATATTTTAGTCCCTAATGTTAGGATTTTTTTTTAGCCCCTAATATTTTAGCCTT

mRNA sequence

GTCATTGTTGCCACTAAGTTTCAATCTATGCCTCTTGGATGTTGTCTGGATGTACCAAGAAATATCTATGGTACAAGGAAACTCAAGGAACTGTTGGAGAACAGATTGGGCTGGAAATTTCAGAACAATATTGCAACTGATGGAATTTCCTTTGATGAAGATGATGAGTTTGCTCCTGTAGTTGTGAGGATGGATGATTCTGAGTCGTCATGAGGTCTTATAAGTCCTTATAAAAAGGTTAAATATATATTTTAGTCCCTAATGTTAGGATTTTTTTTTAGCCCCTAATATTTTAGCCTT

Coding sequence (CDS)

GTCATTGTTGCCACTAAGTTTCAATCTATGCCTCTTGGATGTTGTCTGGATGTACCAAGAAATATCTATGGTACAAGGAAACTCAAGGAACTGTTGGAGAACAGATTGGGCTGGAAATTTCAGAACAATATTGCAACTGATGGAATTTCCTTTGATGAAGATGATGAGTTTGCTCCTGTAGTTGTGAGGATGGATGATTCTGAGTCGTCATGA

Protein sequence

VIVATKFQSMPLGCCLDVPRNIYGTRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS

Homology

[Close]

BLAST of ClCG05G010860 vs. TrEMBL
Match: A0A0A0M0D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G633380 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.8e-14
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLENRLGWKFQN IA DGISFDEDDEFAPVVVRMDDS SS
Sbjct: 410 TRKLKELLENRLGWKFQN-IAIDGISFDEDDEFAPVVVRMDDSSSS 454

[Close]

BLAST of ClCG05G010860 vs. TrEMBL
Match: M5WS96_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006770mg PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-09
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLEN LGW+FQ N A DG+ F++DDEFAPVV  +DD  SS
Sbjct: 346 TRKLKELLENNLGWEFQQNSAVDGMYFEDDDEFAPVVEMLDDPSSS 391

[Close]

BLAST of ClCG05G010860 vs. TrEMBL
Match: U5GFW4_POPTR (AAR2 family protein OS=Populus trichocarpa GN=POPTR_0005s14670g PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.6e-09
Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDS 68
           TRKLKELLEN LGW+FQ N A DGI F+EDDEFAPVV  +D+S
Sbjct: 352 TRKLKELLENILGWEFQQNSAVDGIYFEEDDEFAPVVEMLDES 394

[Close]

BLAST of ClCG05G010860 vs. TrEMBL
Match: D7KSY9_ARALL (AAR2 protein family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475684 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-08
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1


Query: 26  RKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDS 68
           RK KELLENRLGW+FQ   ATDGI F+EDDE+APVV  +D+S
Sbjct: 349 RKFKELLENRLGWEFQKKSATDGIYFEEDDEYAPVVEMLDES 390

[Close]

BLAST of ClCG05G010860 vs. TrEMBL
Match: F4IEV7_ARATH (AAR2 protein family OS=Arabidopsis thaliana GN=At1g66510 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-08
Identity = 30/43 (69.77%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDS 68
           TRK KELLENRLGW+FQ   A DGI F+EDDE+APVV  +D+S
Sbjct: 304 TRKFKELLENRLGWEFQKKSAVDGIYFEEDDEYAPVVEMLDES 346

[Close]

BLAST of ClCG05G010860 vs. TAIR10
Match: AT1G66510.1 (AT1G66510.1 AAR2 protein family)

HSP 1 Score: 66.6 bits (161), Expect = 6.8e-12
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDS 68
           TRK KELLENRLGW+FQ   A DGI F+EDDE+APVV  +D+S
Sbjct: 348 TRKFKELLENRLGWEFQKKSAVDGIYFEEDDEYAPVVEMLDES 390

[Close]

BLAST of ClCG05G010860 vs. NCBI nr
Match: gi|778663924|ref|XP_011660184.1| (PREDICTED: protein AAR2 homolog [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-14
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLENRLGWKFQN IA DGISFDEDDEFAPVVVRMDDS SS
Sbjct: 348 TRKLKELLENRLGWKFQN-IAIDGISFDEDDEFAPVVVRMDDSSSS 392

[Close]

BLAST of ClCG05G010860 vs. NCBI nr
Match: gi|700211491|gb|KGN66587.1| (hypothetical protein Csa_1G633380 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-14
Identity = 43/46 (93.48%), Postives = 43/46 (93.48%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLENRLGWKFQN IA DGISFDEDDEFAPVVVRMDDS SS
Sbjct: 410 TRKLKELLENRLGWKFQN-IAIDGISFDEDDEFAPVVVRMDDSSSS 454

[Close]

BLAST of ClCG05G010860 vs. NCBI nr
Match: gi|659114498|ref|XP_008457081.1| (PREDICTED: protein AAR2 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-14
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLENRLGWKF +NIATDGISFDEDDEFAPVVVR+D+SESS
Sbjct: 348 TRKLKELLENRLGWKF-HNIATDGISFDEDDEFAPVVVRLDESESS 392

[Close]

BLAST of ClCG05G010860 vs. NCBI nr
Match: gi|659114500|ref|XP_008457082.1| (PREDICTED: protein AAR2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 6.9e-14
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLENRLGWKF +NIATDGISFDEDDEFAPVVVR+D+SESS
Sbjct: 337 TRKLKELLENRLGWKF-HNIATDGISFDEDDEFAPVVVRLDESESS 381

[Close]

BLAST of ClCG05G010860 vs. NCBI nr
Match: gi|658059888|ref|XP_008365771.1| (PREDICTED: protein AAR2 homolog [Malus domestica])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-09
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 25  TRKLKELLENRLGWKFQNNIATDGISFDEDDEFAPVVVRMDDSESS 71
           TRKLKELLEN LGW+FQN+ A DG+ F+EDDE+APVV  +DD  SS
Sbjct: 225 TRKLKELLENNLGWEFQNDSAVDGMHFEEDDEYAPVVEMLDDLSSS 270

The following BLAST results are available for this feature:

BLAST of ClCG05G010860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0D1_CUCSA	4.8e-14	93.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G633380 PE=4 SV=1	[more]
M5WS96_PRUPE	1.2e-09	69.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006770mg PE=4 SV=1	[more]
U5GFW4_POPTR	3.6e-09	74.42	AAR2 family protein OS=Populus trichocarpa GN=POPTR_0005s14670g PE=4 SV=1	[more]
D7KSY9_ARALL	1.3e-08	71.43	AAR2 protein family OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475684 PE=...	[more]
F4IEV7_ARATH	1.3e-08	69.77	AAR2 protein family OS=Arabidopsis thaliana GN=At1g66510 PE=4 SV=1	[more]

BLAST of ClCG05G010860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G66510.1	6.8e-12	69.77	AAR2 protein family	[more]

BLAST of ClCG05G010860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778663924\|ref\|XP_011660184.1\|	6.9e-14	93.48	PREDICTED: protein AAR2 homolog [Cucumis sativus]	[more]
gi\|700211491\|gb\|KGN66587.1\|	6.9e-14	93.48	hypothetical protein Csa_1G633380 [Cucumis sativus]	[more]
gi\|659114498\|ref\|XP_008457081.1\|	6.9e-14	91.30	PREDICTED: protein AAR2 homolog isoform X1 [Cucumis melo]	[more]
gi\|659114500\|ref\|XP_008457082.1\|	6.9e-14	91.30	PREDICTED: protein AAR2 homolog isoform X2 [Cucumis melo]	[more]
gi\|658059888\|ref\|XP_008365771.1\|	1.3e-09	69.57	PREDICTED: protein AAR2 homolog [Malus domestica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0006396	RNA processing
biological_process	GO:0000244	spliceosomal tri-snRNP complex assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G010860.1	ClCG05G010860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G010860	CmaCh14G008560	Cucurbita maxima (Rimu)	cmawcgB234
ClCG05G010860	CmoCh14G008700	Cucurbita moschata (Rifu)	cmowcgB220
ClCG05G010860	Lsi05G002960	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G010860	Cp4.1LG03g05780	Cucurbita pepo (Zucchini)	cpewcgB560
ClCG05G010860	MELO3C020300.2	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G010860	Carg24229	Silver-seed gourd	carwcgB0168

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G010860	Silver-seed gourd	carwcgB0739
ClCG05G010860	Cucumber (Chinese Long) v3	cucwcgB238
ClCG05G010860	Cucumber (Chinese Long) v3	cucwcgB241
ClCG05G010860	Watermelon (97103) v2	wcgwmbB229
ClCG05G010860	Wax gourd	wcgwgoB427
ClCG05G010860	Cucumber (Gy14) v1	cgywcgB153
ClCG05G010860	Cucumber (Gy14) v1	cgywcgB345
ClCG05G010860	Cucurbita maxima (Rimu)	cmawcgB407
ClCG05G010860	Cucurbita moschata (Rifu)	cmowcgB406
ClCG05G010860	Wild cucumber (PI 183967)	cpiwcgB237
ClCG05G010860	Cucumber (Chinese Long) v2	cuwcgB230
ClCG05G010860	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G010860	Watermelon (97103) v1	wcgwmB286
ClCG05G010860	Cucurbita pepo (Zucchini)	cpewcgB518
ClCG05G010860	Cucumber (Gy14) v2	cgybwcgB214
ClCG05G010860	Cucumber (Gy14) v2	cgybwcgB217