ClCG05G009580 (gene) Watermelon (Charleston Gray)

NameClCG05G009580
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description60S ribosomal protein L39
LocationCG_Chr05 : 10573486 .. 10574351 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGGTTTTGAGGTGTTTCACTAGTGATTTTCTCTTCATCCTTTGCAATTGTTTTTGAACCTTTTTAAGCATTAGTTATGGAGAAGACAAGAATATAGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAGCTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAGGAATTTCACAAGGAAGAAGAGCAAGATGATGGGTTTGGCAATGAATTTCAAGAATTATTTCAATCAAAGGAAGGACACTCATTTAGTAAGGCTGAAGCTTCCTTATTTACTCCCCTCTAAAAGAGTGAAATTCCACAACATCTGCATTTAATCATTGATGCTTGTAGTATTGTTCTTGGTTGAGTTTTGTTTTAGTTGTATGTGCTATTTTGAAGCTGTTTTGGTTTAGTCCTCACTCAAGGACCTAGCGTAGTTCAGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGGTTTTTATTTTGGTCTTGTTGTTGCTCCTCGTCTCTCAGAATTTGCAGGTTGGAGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA

mRNA sequence

ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAGCTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAGGAATTTCACAAGGAAGAAGAGCAAGATGATGGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGAATTTGCAGGTTGGAGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA

Coding sequence (CDS)

ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAGCTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAGGAATTTCACAAGGAAGAAGAGCAAGATGATGGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGAATTTGCAGGTTGGAGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA

Protein sequence

MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARFLNFLLLNQEVQKVNFVRGLPASFSSNYRHKKQVSERDSDGDSLANASSEEIENFESKEFHKEEEQDDGRGLEASLEASLVGWIISYVWKNLQVGGPVWSCWDSTIAVYPSPLLIS
BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-22
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTF+IKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0E0K6B7_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0D3FBL7_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TrEMBL
Match: J3LI08_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0B2R5L1_GLYSO (60S ribosomal protein L39 OS=Glycine soja GN=glysoja_016233 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0B2SG69_GLYSO (60S ribosomal protein L39 OS=Glycine soja GN=glysoja_049221 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
           MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 69  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 118

BLAST of ClCG05G009580 vs. TAIR10
Match: AT4G31985.1 (AT4G31985.1 Ribosomal protein L39 family protein)

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-22
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDNTIRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TAIR10
Match: AT3G02190.1 (AT3G02190.1 Ribosomal protein L39 family protein)

HSP 1 Score: 97.4 bits (241), Expect = 8.7e-21
Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHK+F IKKKL KKMRQNRPIP WIRLRTDN IRYNAK+RHWRRTKLG
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLG 50

BLAST of ClCG05G009580 vs. TAIR10
Match: AT2G25210.1 (AT2G25210.1 Ribosomal protein L39 family protein)

HSP 1 Score: 87.8 bits (216), Expect = 6.9e-18
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1

Query: 9  IKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          IKKKL KKMRQNRPIP+WIRLRTDNTIRYNAK+RHWRRTKLG
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLG 43

BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|944267690|gb|KQL31930.1| (hypothetical protein SETIT_018656mg [Setaria italica])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
           MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 87  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 136

BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|413952921|gb|AFW85570.1| (60S ribosomal protein L39, partial [Zea mays])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
          MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 49 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 98

BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|47497035|dbj|BAD19088.1| (putative 60S ribosomal protein L39 [Oryza sativa Japonica Group])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
           MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 68  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 117

BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|734427112|gb|KHN44040.1| (60S ribosomal protein L39 [Glycine soja])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
           MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 69  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 118

BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|670413178|ref|XP_008647774.1| (PREDICTED: LOC100280595 isoform X1 [Zea mays])

HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLG 51
           MPSHKTFRIKKKLAKKMRQNRPIPYWIR+RTDNTIRYNAK+RHWRRTKLG
Sbjct: 436 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLG 485

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL392_ORYSJ1.1e-2296.0060S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2[more]
RL39_MAIZE1.1e-2296.0060S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1[more]
RL391_ORYSJ1.1e-2296.0060S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2[more]
RL393_ORYSJ3.3e-2294.0060S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1[more]
RL391_ARATH1.1e-2090.0060S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2[more]
Match NameE-valueIdentityDescription
A0A0E0K6B7_ORYPU1.3e-2096.00Uncharacterized protein OS=Oryza punctata PE=3 SV=1[more]
A0A0D3FBL7_9ORYZ1.3e-2096.00Uncharacterized protein OS=Oryza barthii PE=3 SV=1[more]
J3LI08_ORYBR1.3e-2096.00Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1[more]
A0A0B2R5L1_GLYSO1.3e-2096.0060S ribosomal protein L39 OS=Glycine soja GN=glysoja_016233 PE=3 SV=1[more]
A0A0B2SG69_GLYSO1.3e-2096.0060S ribosomal protein L39 OS=Glycine soja GN=glysoja_049221 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31985.16.0e-2290.00 Ribosomal protein L39 family protein[more]
AT3G02190.18.7e-2188.00 Ribosomal protein L39 family protein[more]
AT2G25210.16.9e-1892.86 Ribosomal protein L39 family protein[more]
Match NameE-valueIdentityDescription
gi|944267690|gb|KQL31930.1|1.8e-2096.00hypothetical protein SETIT_018656mg [Setaria italica][more]
gi|413952921|gb|AFW85570.1|1.8e-2096.0060S ribosomal protein L39, partial [Zea mays][more]
gi|47497035|dbj|BAD19088.1|1.8e-2096.00putative 60S ribosomal protein L39 [Oryza sativa Japonica Group][more]
gi|734427112|gb|KHN44040.1|1.8e-2096.0060S ribosomal protein L39 [Glycine soja][more]
gi|670413178|ref|XP_008647774.1|1.8e-2096.00PREDICTED: LOC100280595 isoform X1 [Zea mays][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000077Ribosomal_L39
IPR020083Ribosomal_L39_CS
IPR023626Ribosomal_L39e_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G009580.1ClCG05G009580.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39eHAMAPMF_00629Ribosomal_L39ecoord: 1..52
score: 15
IPR000077Ribosomal protein L39ePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 2..50
score: 2.4
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 9..49
score: 7.2
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 30..46
scor
IPR023626Ribosomal protein L39e domainGENE3DG3DSA:1.10.1620.10coord: 2..50
score: 1.4
IPR023626Ribosomal protein L39e domainunknownSSF48662Ribosomal protein L39ecoord: 3..50
score: 2.35
NoneNo IPR availablePRODOMPD007914coord: 1..37
score: 7.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None