ClCG05G009580 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGGTTTTGAGGTGTTTCACTAGTGATTTTCTCTTCATCCTTTGCAATTGTTTTTGAACCTTTTTAAGCATTAGTTATGGAGAAGACAAGAATATAGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAGCTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAGGAATTTCACAAGGAAGAAGAGCAAGATGATGGGTTTGGCAATGAATTTCAAGAATTATTTCAATCAAAGGAAGGACACTCATTTAGTAAGGCTGAAGCTTCCTTATTTACTCCCCTCTAAAAGAGTGAAATTCCACAACATCTGCATTTAATCATTGATGCTTGTAGTATTGTTCTTGGTTGAGTTTTGTTTTAGTTGTATGTGCTATTTTGAAGCTGTTTTGGTTTAGTCCTCACTCAAGGACCTAGCGTAGTTCAGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGGTTTTTATTTTGGTCTTGTTGTTGCTCCTCGTCTCTCAGAATTTGCAGGTTGGAGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAGCTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAGGAATTTCACAAGGAAGAAGAGCAAGATGATGGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGAATTTGCAGGTTGGAGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA ATGCCGTCTCACAAGACCTTTAGAATCAAGAAGAAGTTGGCGAAGAAGATGAGGCAGAACAGGCCTATTCCTTATTGGATCCGTCTTAGGACCGACAATACCATCAGGTACAATGCGAAGCAAAGGCACTGGCGCCGCACTAAGCTCGGAGCTAGATTTCTGAATTTTTTGCTTCTCAATCAAGAAGTTCAAAAAGTAAATTTTGTAAGAGGTCTCCCAGCTAGTTTTTCAAGCAACTACCGCCACAAAAAACAAGTTTCAGAAAGGGATTCGGATGGAGATTCATTAGCAAATGCTAGCAGTGAAGAGATAGAAAATTTTGAATCAAAGGAATTTCACAAGGAAGAAGAGCAAGATGATGGAAGAGGCTTGGAAGCATCTTTGGAAGCATCTCTAGTCGGATGGATTATATCATATGTTTGGAAGAATTTGCAGGTTGGAGGGCCCGTTTGGTCCTGTTGGGATTCTACTATTGCTGTTTATCCTAGTCCTTTGCTGATTTCCTAA MPSHKTFRIKKKLAKKMRQNRPIPYWIRLRTDNTIRYNAKQRHWRRTKLGARFLNFLLLNQEVQKVNFVRGLPASFSSNYRHKKQVSERDSDGDSLANASSEEIENFESKEFHKEEEQDDGRGLEASLEASLVGWIISYVWKNLQVGGPVWSCWDSTIAVYPSPLLIS
BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL392_ORYSJ (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica GN=RPL39B PE=3 SV=2) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22 Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22 Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL391_ORYSJ (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica GN=RPL39A PE=3 SV=2) HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22 Identity = 48/50 (96.00%), Postives = 48/50 (96.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL393_ORYSJ (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 3.3e-22 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=3 SV=2) HSP 1 Score: 101.3 bits (251), Expect = 1.1e-20 Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0E0K6B7_ORYPU (Uncharacterized protein OS=Oryza punctata PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0D3FBL7_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TrEMBL
Match: J3LI08_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0B2R5L1_GLYSO (60S ribosomal protein L39 OS=Glycine soja GN=glysoja_016233 PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TrEMBL
Match: A0A0B2SG69_GLYSO (60S ribosomal protein L39 OS=Glycine soja GN=glysoja_049221 PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TAIR10
Match: AT4G31985.1 (AT4G31985.1 Ribosomal protein L39 family protein) HSP 1 Score: 101.3 bits (251), Expect = 6.0e-22 Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TAIR10
Match: AT3G02190.1 (AT3G02190.1 Ribosomal protein L39 family protein) HSP 1 Score: 97.4 bits (241), Expect = 8.7e-21 Identity = 44/50 (88.00%), Postives = 44/50 (88.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. TAIR10
Match: AT2G25210.1 (AT2G25210.1 Ribosomal protein L39 family protein) HSP 1 Score: 87.8 bits (216), Expect = 6.9e-18 Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1
BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|944267690|gb|KQL31930.1| (hypothetical protein SETIT_018656mg [Setaria italica]) HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|413952921|gb|AFW85570.1| (60S ribosomal protein L39, partial [Zea mays]) HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|47497035|dbj|BAD19088.1| (putative 60S ribosomal protein L39 [Oryza sativa Japonica Group]) HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|734427112|gb|KHN44040.1| (60S ribosomal protein L39 [Glycine soja]) HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
BLAST of ClCG05G009580 vs. NCBI nr
Match: gi|670413178|ref|XP_008647774.1| (PREDICTED: LOC100280595 isoform X1 [Zea mays]) HSP 1 Score: 107.8 bits (268), Expect = 1.8e-20 Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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