ClCG05G007310 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G007310
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Retrotransposon protein, putative, unclassified
Location	CG_Chr05 : 7665058 .. 7665537 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATCCTCTCATGGAATGTGAGGGGCATTGGCTCAGCCCAGAAAAGAGCCATTACAAAGGGTGTTATCACGGCTGTAAGCCCGAACTTTGTCTTTCTAACTAAAACGAAATTAGTCTTAGTGGATAAGAAGATTATCAAATCTCTCTGGAGTTCCATCAGTATCGATTGGGCACACACGCTTTCCACTGGTACATTTGGGGGAATCATAATCATGTGGGACTCTTTAATCCACTATGCAGATGAGGTTTATGATGGAAGCAACTCCTTATTAGTCTCTATCAGGTTTTCAGATAATGTTATGTGGTGGATATTGGGAATATATGGTCCTGCTAGCAGACGAAACAGAAAGTTTTTTTGGGAAGAGCTTGACACTCTAGCTTCAACTTGCAATAGCTGCTGGATTTTGGGGGGAGCCTTCAATGTTTATAGATGGCCAATGAAACTACATCATGCAGACCATCCAGACTCAACATGA

mRNA sequence

ATGAAGATCCTCTCATGGAATGTGAGGGGCATTGGCTCAGCCCAGAAAAGAGCCATTACAAAGGGTGTTATCACGGCTGTAAGCCCGAACTTTGTCTTTCTAACTAAAACGAAATTAGTCTTAGTGGATAAGAAGATTATCAAATCTCTCTGGAGTTCCATCAGTATCGATTGGGCACACACGCTTTCCACTGGTACATTTGGGGGAATCATAATCATGTGGGACTCTTTAATCCACTATGCAGATGAGGTTTATGATGGAAGCAACTCCTTATTAGTCTCTATCAGGTTTTCAGATAATGTTATGTGGTGGATATTGGGAATATATGGTCCTGCTAGCAGACGAAACAGAAAGTTTTTTTGGGAAGAGCTTGACACTCTAGCTTCAACTTGCAATAGCTGCTGGATTTTGGGGGGAGCCTTCAATGTTTATAGATGGCCAATGAAACTACATCATGCAGACCATCCAGACTCAACATGA

Coding sequence (CDS)

ATGAAGATCCTCTCATGGAATGTGAGGGGCATTGGCTCAGCCCAGAAAAGAGCCATTACAAAGGGTGTTATCACGGCTGTAAGCCCGAACTTTGTCTTTCTAACTAAAACGAAATTAGTCTTAGTGGATAAGAAGATTATCAAATCTCTCTGGAGTTCCATCAGTATCGATTGGGCACACACGCTTTCCACTGGTACATTTGGGGGAATCATAATCATGTGGGACTCTTTAATCCACTATGCAGATGAGGTTTATGATGGAAGCAACTCCTTATTAGTCTCTATCAGGTTTTCAGATAATGTTATGTGGTGGATATTGGGAATATATGGTCCTGCTAGCAGACGAAACAGAAAGTTTTTTTGGGAAGAGCTTGACACTCTAGCTTCAACTTGCAATAGCTGCTGGATTTTGGGGGGAGCCTTCAATGTTTATAGATGGCCAATGAAACTACATCATGCAGACCATCCAGACTCAACATGA

Protein sequence

MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHTLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFFWEELDTLASTCNSCWILGGAFNVYRWPMKLHHADHPDST

Homology

[Close]

BLAST of ClCG05G007310 vs. TrEMBL
Match: M5WJ76_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-25
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           MKI+SWN+RG+GS +KR + K  +  + P+ V L +TK  +VD++++  +W S   +W  
Sbjct: 323 MKIISWNIRGLGSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVAGVWGSRFKEWVF 382

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNV--MWWILGIYGPASRRNRK 120
           + S G  GGI ++W+S      +   G  S  VSIR  +N+   WW+ GIYGP  +R R 
Sbjct: 383 SPSLGRSGGIAVLWNSQSVSVIDSMVGEFS--VSIRIEENIGTDWWLSGIYGPCRQRERN 442

Query: 121 FFWEELDTLASTCNSCWILGGAFNVYRW 147
            FWEEL  L   C   W LGG FNV R+
Sbjct: 443 SFWEELADLYGYCGDMWCLGGDFNVVRF 468

[Close]

BLAST of ClCG05G007310 vs. TrEMBL
Match: A5B9F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-25
Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           +KI+SWN RG+GS +KR + K  + +  P+ V + +TK    D++ + SLW++ + +WA 
Sbjct: 780 IKIISWNTRGLGSRKKRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSLWTARNKEWAV 839

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFF 120
             + G  GGI++MWDS   +++EV  GS S+ V      +  +W+  +YGP S   RK F
Sbjct: 840 LPACGASGGILVMWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDF 899

Query: 121 WEELDTLASTCNSCWILGGAFNVYR 146
           WEEL  +    + CW +GG FNV R
Sbjct: 900 WEELSDIFGLSSPCWCVGGDFNVIR 924

[Close]

BLAST of ClCG05G007310 vs. TrEMBL
Match: A5BPI6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.5e-23
Identity = 53/144 (36.81%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 2   KILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHT 61
           KI+SWN RG+GS +KR + K  + +  P+ V + +TK    D++ + S+W++ + +WA  
Sbjct: 113 KIISWNTRGLGSRKKRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSVWTARNKEWAVL 172

Query: 62  LSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFFW 121
            + G  GGI+++WDS   +++EV  GS S+ V      +  +W   +YGP S   RK FW
Sbjct: 173 PACGASGGILVIWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWXSAVYGPNSTALRKDFW 232

Query: 122 EELDTLASTCNSCWILGGAFNVYR 146
            EL  +    + CW +GG FNV R
Sbjct: 233 VELSDIFGLSSPCWCVGGDFNVIR 256

[Close]

BLAST of ClCG05G007310 vs. TrEMBL
Match: A5AK27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 7.5e-23
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           MKI+SWN RG+GS +KR + K  +++  P+ V + +TK    D++++ S+WS  + DWA 
Sbjct: 757 MKIISWNTRGLGSKKKRRVVKNFLSSEKPDVVMIQETKKEECDRRLVGSVWSVRNKDWAA 816

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFF 120
             ++G  GGI+I+WDS+    +EV  GS S+ +          W+  +YGP +   RK F
Sbjct: 817 LPASGASGGILIIWDSIKMRREEVVLGSFSVSIKFAMDGCESLWLSAVYGPNNSALRKDF 876

Query: 121 WEELDTLASTCNSCWILGGAFNVYR 146
           W EL  +A   +  W +GG FNV R
Sbjct: 877 WVELSDIAGLSHPRWCVGGDFNVIR 901

[Close]

BLAST of ClCG05G007310 vs. TrEMBL
Match: A5BSZ3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035610 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.7e-22
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 1


Query: 2   KILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAHT 61
           KI+SWN RG+GS +KR + K  + +  P+ V + +TK    D++ + S+W++ + +W   
Sbjct: 508 KIISWNTRGLGSRKKRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSVWTARNKEWVVL 567

Query: 62  LSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFFW 121
            + G  GGI+++WDS    ++EV  GS S+ V      +  +W+  +YGP S   RK FW
Sbjct: 568 PACGASGGILVIWDSKKLLSEEVVLGSFSVSVKFAMDGSEQFWLSAVYGPNSTALRKDFW 627

Query: 122 EELDTLASTCNSCWILGGAFNVYR 146
            EL  +    + CW +GG FNV R
Sbjct: 628 VELSDIFGLSSPCWCVGGDFNVIR 651

[Close]

BLAST of ClCG05G007310 vs. NCBI nr
Match: gi|778674440|ref|XP_011650214.1| (PREDICTED: uncharacterized protein LOC105434766 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 4.8e-31
Identity = 69/146 (47.26%), Postives = 92/146 (63.01%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           MKIL+WNVRGIGS QKR   K VI+  +P+FV L++TKL+ V+ K++KS+WSSISI +  
Sbjct: 1   MKILAWNVRGIGSTQKRVQIKHVISDYAPDFVCLSETKLLNVNNKLVKSIWSSISIKYIF 60

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFF 120
              +G  GGI++MWD L H       G  ++  +   +D   WWI  +Y   +R  RK F
Sbjct: 61  KQVSGRSGGILLMWDDLKHQLINYVIGEFTISTNFVEADGYNWWITSVYDLVNRSRRKSF 120

Query: 121 WEELDTLASTCNSCWILGGAFNVYRW 147
           W+EL  LA TC S W+L G FN  RW
Sbjct: 121 WQELMNLAQTCGSNWLLAGDFNAIRW 146

[Close]

BLAST of ClCG05G007310 vs. NCBI nr
Match: gi|659071590|ref|XP_008460776.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 1.6e-29
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           MK+L+WN RG+GS  KRAI K  I + SP+FV LT+T+L +  K+IIKSLW S SI+W  
Sbjct: 672 MKLLTWNARGLGSPSKRAIIKNTIISYSPDFVILTETRLKITTKRIIKSLWPSNSINWIA 731

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFF 120
             +  + GGI+I+WD+ IH      +G  SL  +   ++N+ WW+ G+YGP  RR R  F
Sbjct: 732 KNALDSSGGILILWDAQIHSILSHEEGFFSLSANFLSNNNLSWWLTGLYGPVKRRERARF 791

Query: 121 WEELDTLASTCNSCWILGGAFNVYR 146
           W +L  L    +  WILGG  NV R
Sbjct: 792 WTDLHNLQHLNSLPWILGGDLNVTR 816

[Close]

BLAST of ClCG05G007310 vs. NCBI nr
Match: gi|595882371|ref|XP_007212580.1| (hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica])

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           MKI+SWN+RG+GS +KR + K  +  + P+ V L +TK  +VD++++  +W S   +W  
Sbjct: 323 MKIISWNIRGLGSRRKRLLVKEQLRRLKPDIVILLETKKEIVDRQLVAGVWGSRFKEWVF 382

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNV--MWWILGIYGPASRRNRK 120
           + S G  GGI ++W+S      +   G  S  VSIR  +N+   WW+ GIYGP  +R R 
Sbjct: 383 SPSLGRSGGIAVLWNSQSVSVIDSMVGEFS--VSIRIEENIGTDWWLSGIYGPCRQRERN 442

Query: 121 FFWEELDTLASTCNSCWILGGAFNVYRW 147
            FWEEL  L   C   W LGG FNV R+
Sbjct: 443 SFWEELADLYGYCGDMWCLGGDFNVVRF 468

[Close]

BLAST of ClCG05G007310 vs. NCBI nr
Match: gi|147838411|emb|CAN74319.1| (hypothetical protein VITISV_035345 [Vitis vinifera])

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 1


Query: 1   MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
           +KI+SWN RG+GS +KR + K  + +  P+ V + +TK    D++ + SLW++ + +WA 
Sbjct: 780 IKIISWNTRGLGSRKKRRVVKDFLRSEKPDIVMIQETKKAECDRRFVGSLWTARNKEWAV 839

Query: 61  TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFF 120
             + G  GGI++MWDS   +++EV  GS S+ V      +  +W+  +YGP S   RK F
Sbjct: 840 LPACGASGGILVMWDSKKLHSEEVVLGSFSVSVKFAVDGSEQFWLSAVYGPNSTALRKDF 899

Query: 121 WEELDTLASTCNSCWILGGAFNVYR 146
           WEEL  +    + CW +GG FNV R
Sbjct: 900 WEELSDIFGLSSPCWCVGGDFNVIR 924

[Close]

BLAST of ClCG05G007310 vs. NCBI nr
Match: gi|657990185|ref|XP_008387315.1| (PREDICTED: uncharacterized protein LOC103449768 [Malus domestica])

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 54/146 (36.99%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 1    MKILSWNVRGIGSAQKRAITKGVITAVSPNFVFLTKTKLVLVDKKIIKSLWSSISIDWAH 60
            MKI+SWNVRG+GS QKR   K     + P+ + L +TK   +D++++ S+W S   +W +
Sbjct: 1000 MKIISWNVRGLGSKQKRLTLKQQFRRLQPDIIILQETKKTSIDRRLVASVWGSRFKEWIY 1059

Query: 61   TLSTGTFGGIIIMWDSLIHYADEVYDGSNSLLVSIRFSDNVMWWILGIYGPASRRNRKFF 120
              + G+ GGI ++W++      E   G  S+ + I+  + + WW+ G+YGP   R R+ F
Sbjct: 1060 APAQGSSGGIAVIWNTKNISVTESLIGVFSVSIKIKAFNGLEWWLSGVYGPCKSRERREF 1119

Query: 121  WEELDTLASTCNSCWILGGAFNVYRW 147
            WEE+  L   C   W +GG FNV R+
Sbjct: 1120 WEEMAGLYGLCGPKWCVGGDFNVVRF 1145

The following BLAST results are available for this feature:

BLAST of ClCG05G007310 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WJ76_PRUPE	2.8e-25	41.22	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015871mg PE=4 S...	[more]
A5B9F0_VITVI	6.1e-25	38.62	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1	[more]
A5BPI6_VITVI	7.5e-23	36.81	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008538 PE=4 SV=1	[more]
A5AK27_VITVI	7.5e-23	37.93	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008195 PE=4 SV=1	[more]
A5BSZ3_VITVI	1.7e-22	36.11	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035610 PE=4 SV=1	[more]

BLAST of ClCG05G007310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674440\|ref\|XP_011650214.1\|	4.8e-31	47.26	PREDICTED: uncharacterized protein LOC105434766 [Cucumis sativus]	[more]
gi\|659071590\|ref\|XP_008460776.1\|	1.6e-29	46.21	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103499536 [Cucumis me...	[more]
gi\|595882371\|ref\|XP_007212580.1\|	4.0e-25	41.22	hypothetical protein PRUPE_ppa015871mg, partial [Prunus persica]	[more]
gi\|147838411\|emb\|CAN74319.1\|	8.8e-25	38.62	hypothetical protein VITISV_035345 [Vitis vinifera]	[more]
gi\|657990185\|ref\|XP_008387315.1\|	2.0e-24	36.99	PREDICTED: uncharacterized protein LOC103449768 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005135	Endo/exonuclease/phosphatase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G007310.1	ClCG05G007310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005135	Endonuclease/exonuclease/phosphatase	GENE3D	G3DSA:3.60.10.10		coord: 1..153 score: 1.1
IPR005135	Endonuclease/exonuclease/phosphatase	unknown	SSF56219	DNase I-like	coord: 1..149 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G007310	Cla97C05G089050	Watermelon (97103) v2	wcgwmbB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G007310	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G007310	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G007310	Silver-seed gourd	carwcgB0372
ClCG05G007310	Silver-seed gourd	carwcgB0847
ClCG05G007310	Cucumber (Chinese Long) v3	cucwcgB225
ClCG05G007310	Wax gourd	wcgwgoB426
ClCG05G007310	Cucumber (Gy14) v1	cgywcgB451
ClCG05G007310	Cucurbita maxima (Rimu)	cmawcgB296
ClCG05G007310	Cucurbita maxima (Rimu)	cmawcgB663
ClCG05G007310	Cucurbita moschata (Rifu)	cmowcgB290
ClCG05G007310	Cucurbita moschata (Rifu)	cmowcgB664
ClCG05G007310	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G007310	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G007310	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G007310	Watermelon (97103) v1	wcgwmB286
ClCG05G007310	Cucurbita pepo (Zucchini)	cpewcgB207
ClCG05G007310	Cucurbita pepo (Zucchini)	cpewcgB399
ClCG05G007310	Bottle gourd (USVL1VR-Ls)	lsiwcgB336