ClCG05G002880 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G002880
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	At2g44640/F16B22.13
Location	CG_Chr05 : 2771660 .. 2772136 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTCACTAATTGTGGCCTTCTATCGCACGTCCTTCTGGTATTTTCACAAAGAATTGAAGGTTTGGTTTTCTAATTCGTTTAAGCAATTTTTTTGTGAAGGAAAAAAGTCCAACAGGACTATATTTTCCTCTGACATTGTTTAGATTGCAATTGATTTTGCAAATTTCAGATGTATGATCTAATGGAGTCTTTACACTTCTAGGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA

mRNA sequence

ATGCATTCACTAATTGTGGCCTTCTATCGCACGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA

Coding sequence (CDS)

ATGCATTCACTAATTGTGGCCTTCTATCGCACGTGGGTTGGATTGGTTGGCCAATTTCGTCCAAAGAAACTGATATCTTCAATAAAAGCCGAACTTTCTGCTGCGGACAGCCTTGAGCTCCCTGTCTTGAAAGACGTTGCTAGACAGTTTCTGGACAAGTCGCTCTATACATATGGACTATGCTCTCAGTTTTCTCCTAGTCCATTTTCATCTGTATATGTCAGCACAGAAGGGCATGGTGAGAGGAAAGGGCATCGCCACAAGGCGATGTTTTATCAAAAGGTCAGCATTGTAGTCATCTAA

Protein sequence

MHSLIVAFYRTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSSVYVSTEGHGERKGHRHKAMFYQKVSIVVI

Homology

[Close]

BLAST of ClCG05G002880 vs. TrEMBL
Match: A0A0A0L4I9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128880 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.6e-29
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W GLVGQFRPKKLISSIKA++SA + LEL  LKD+A  FLDKSLYTYG+CSQFS  PFSS
Sbjct: 92  WAGLVGQFRPKKLISSIKAQISAVEQLELSDLKDIASLFLDKSLYTYGICSQFSTGPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           VYVSTE  GERKGHRHKAMFY ++
Sbjct: 152 VYVSTEKLGERKGHRHKAMFYHRL 175

[Close]

BLAST of ClCG05G002880 vs. TrEMBL
Match: M5X101_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005217mg PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-23
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+GL+GQFRPKKLISSIKAE S  D +E+P  KDVA+  LDKSLY++GLC+Q   +P SS
Sbjct: 92  WLGLIGQFRPKKLISSIKAEFSTNDDMEVPTFKDVAKHVLDKSLYSFGLCTQLLVAPSSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           + +STEGHGE+KG R+K M + K+
Sbjct: 152 IKLSTEGHGEKKGRRNKFMLFHKL 175

[Close]

BLAST of ClCG05G002880 vs. TrEMBL
Match: M0ZN40_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401001686 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 52/86 (60.47%), Postives = 66/86 (76.74%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+G  GQFRPKKL+S IKAELS+ D  ELP+LKD+ + FL+KSLY +GLCSQ S +P SS
Sbjct: 92  WLGFTGQFRPKKLVSDIKAELSSVDEWELPILKDIGKHFLEKSLYAFGLCSQLSLTPSSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKVSI 98
           + +STE HGE+KG R +AM + K  I
Sbjct: 152 LLLSTEKHGEKKGRRLRAMLFHKARI 177

[Close]

BLAST of ClCG05G002880 vs. TrEMBL
Match: A0A068ULG6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028724001 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-23
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 1


Query: 1   MHSLIVAFYRT---WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYT 60
           +HSL+     T   W+GL+GQFRPKKLISSIKAE+SA D  ELP  +DVAR FL+KSLY+
Sbjct: 79  LHSLVFRAAPTANWWLGLIGQFRPKKLISSIKAEVSAGDEWELPAFRDVARHFLNKSLYS 138

Query: 61  YGLCSQFSPSPFSSVYVSTEGHGERKGHRHKAMFYQKVSI 98
            GLCSQ + +  +S+ +S+E HGERKG R +AM + K +I
Sbjct: 139 IGLCSQLALTSSASILLSSEKHGERKGRRSRAMLFYKATI 178

[Close]

BLAST of ClCG05G002880 vs. TrEMBL
Match: M0ZN42_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401001686 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+G  GQFRPKKL+S IKAELS+ D  ELP+LKD+ + FL+KSLY +GLCSQ S +P SS
Sbjct: 92  WLGFTGQFRPKKLVSDIKAELSSVDEWELPILKDIGKHFLEKSLYAFGLCSQLSLTPSSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           + +STE HGE+KG R +AM + K+
Sbjct: 152 LLLSTEKHGEKKGRRLRAMLFHKL 175

[Close]

BLAST of ClCG05G002880 vs. TAIR10
Match: AT2G44640.1 (AT2G44640.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 81.3 bits (199), Expect = 3.8e-16
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+GLVGQF+PKKL + IKA++S A+  +L V+KD A+  +DKSLY+ GL +Q +    SS
Sbjct: 92  WLGLVGQFKPKKLFADIKADISNAEEWDLQVVKDTAKHIVDKSLYSIGLWTQIALGTSSS 151

Query: 72  VYVSTEGHGERKGHRHKAM 91
           + +STE  G++ G R+K M
Sbjct: 152 LLLSTERLGDKNGLRNKLM 170

[Close]

BLAST of ClCG05G002880 vs. NCBI nr
Match: gi|659075684|ref|XP_008438274.1| (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis melo])

HSP 1 Score: 136.7 bits (343), Expect = 2.2e-29
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 1


Query: 10  RTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPF 69
           R WVGLVGQFRPKKLIS +KA+LS  D  EL  LKDVAR  LDKS YTYG+CSQFSPSPF
Sbjct: 90  RWWVGLVGQFRPKKLISLLKAKLSDEDGFELSDLKDVARLLLDKSHYTYGICSQFSPSPF 149

Query: 70  SSVYVSTEGHGERKGHRHKAMFYQKV 96
           SSVYVSTE HGERKG RHKAMFY ++
Sbjct: 150 SSVYVSTEKHGERKGRRHKAMFYHRL 175

[Close]

BLAST of ClCG05G002880 vs. NCBI nr
Match: gi|449432352|ref|XP_004133963.1| (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-29
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W GLVGQFRPKKLISSIKA++SA + LEL  LKD+A  FLDKSLYTYG+CSQFS  PFSS
Sbjct: 92  WAGLVGQFRPKKLISSIKAQISAVEQLELSDLKDIASLFLDKSLYTYGICSQFSTGPFSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           VYVSTE  GERKGHRHKAMFY ++
Sbjct: 152 VYVSTEKLGERKGHRHKAMFYHRL 175

[Close]

BLAST of ClCG05G002880 vs. NCBI nr
Match: gi|720059501|ref|XP_010274593.1| (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-23
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1


Query: 7   AFYRTWVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSP 66
           AF   W+G++GQFRPKKL+SSIKAE +  D L+LP  KDVA+ FLDKSLY  GLC+Q S 
Sbjct: 87  AFSNAWLGIIGQFRPKKLLSSIKAEFTVDDVLDLPAFKDVAKHFLDKSLYALGLCAQISL 146

Query: 67  SPFSSVYVSTEGHGERKGHRHKAMFYQKV 96
           +P SS+ +  E HGERKGHR+KAM + K+
Sbjct: 147 TPASSLLLMKESHGERKGHRNKAMLFNKL 175

[Close]

BLAST of ClCG05G002880 vs. NCBI nr
Match: gi|645252835|ref|XP_008232303.1| (PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Prunus mume])

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-23
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+GL+GQFRPKKLISSIKAE S  D +E+P  KDVA+  LDKSLY++GLC+Q   +P SS
Sbjct: 92  WLGLIGQFRPKKLISSIKAEFSTNDDMEVPTFKDVAKHVLDKSLYSFGLCTQLLVAPSSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           + +STEGHGE+KG R+K M + K+
Sbjct: 152 IKLSTEGHGEKKGRRNKFMLFHKL 175

[Close]

BLAST of ClCG05G002880 vs. NCBI nr
Match: gi|595999061|ref|XP_007217957.1| (hypothetical protein PRUPE_ppa005217mg [Prunus persica])

HSP 1 Score: 115.2 bits (287), Expect = 6.8e-23
Identity = 52/84 (61.90%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 12  WVGLVGQFRPKKLISSIKAELSAADSLELPVLKDVARQFLDKSLYTYGLCSQFSPSPFSS 71
           W+GL+GQFRPKKLISSIKAE S  D +E+P  KDVA+  LDKSLY++GLC+Q   +P SS
Sbjct: 92  WLGLIGQFRPKKLISSIKAEFSTNDDMEVPTFKDVAKHVLDKSLYSFGLCTQLLVAPSSS 151

Query: 72  VYVSTEGHGERKGHRHKAMFYQKV 96
           + +STEGHGE+KG R+K M + K+
Sbjct: 152 IKLSTEGHGEKKGRRNKFMLFHKL 175

The following BLAST results are available for this feature:

BLAST of ClCG05G002880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4I9_CUCSA	2.6e-29	77.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G128880 PE=4 SV=1	[more]
M5X101_PRUPE	4.7e-23	61.90	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005217mg PE=4 SV=1	[more]
M0ZN40_SOLTU	8.1e-23	60.47	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401001686 PE=4 SV=1	[more]
A0A068ULG6_COFCA	8.1e-23	57.00	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028724001 PE=4 SV=1	[more]
M0ZN42_SOLTU	1.4e-22	60.71	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401001686 PE=4 SV=1	[more]

BLAST of ClCG05G002880 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44640.1	3.8e-16	49.37	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of ClCG05G002880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659075684\|ref\|XP_008438274.1\|	2.2e-29	77.91	PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis melo]	[more]
gi\|449432352\|ref\|XP_004133963.1\|	3.7e-29	77.38	PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Cucumis sativus...	[more]
gi\|720059501\|ref\|XP_010274593.1\|	1.0e-23	60.67	PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Nelumbo nucifer...	[more]
gi\|645252835\|ref\|XP_008232303.1\|	6.8e-23	61.90	PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Prunus mume]	[more]
gi\|595999061\|ref\|XP_007217957.1\|	6.8e-23	61.90	hypothetical protein PRUPE_ppa005217mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0034196	acylglycerol transport
biological_process	GO:1990052	ER to chloroplast lipid transport
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0044446	intracellular organelle part
cellular_component	GO:0009707	chloroplast outer membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0070300	phosphatidic acid binding
molecular_function	GO:0042803	protein homodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G002880.1	ClCG05G002880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34954	FAMILY NOT NAMED	coord: 4..94 score: 3.8
None	No IPR available	PANTHER	PTHR34954:SF2	EXPRESSED PROTEIN	coord: 4..94 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G002880	Csa3G128880	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G002880	MELO3C006267	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G002880	Cla021375	Watermelon (97103) v1	wcgwmB286
ClCG05G002880	Cla97C05G083470	Watermelon (97103) v2	wcgwmbB229
ClCG05G002880	Bhi01G000114	Wax gourd	wcgwgoB428
ClCG05G002880	CSPI03G10280	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G002880	Cucsa.256930	Cucumber (Gy14) v1	cgywcgB451
ClCG05G002880	CmoCh06G012140	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G002880	Lsi05G018930	Bottle gourd (USVL1VR-Ls)	lsiwcgB335
ClCG05G002880	Cp4.1LG08g02470	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G002880	CsGy3G010400	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G002880	MELO3C006267.2	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G002880	Carg06332	Silver-seed gourd	carwcgB0935
ClCG05G002880	CsaV3_3G010430	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G002880	Cucumber (Chinese Long) v3	cucwcgB232
ClCG05G002880	Cucumber (Chinese Long) v3	cucwcgB236
ClCG05G002880	Cucumber (Chinese Long) v3	cucwcgB490
ClCG05G002880	Watermelon (97103) v2	wcgwmbB218
ClCG05G002880	Watermelon (97103) v2	wcgwmbB234
ClCG05G002880	Wax gourd	wcgwgoB411
ClCG05G002880	Wax gourd	wcgwgoB416
ClCG05G002880	Watermelon (Charleston Gray)	wcgwcgB023
ClCG05G002880	Watermelon (Charleston Gray)	wcgwcgB052
ClCG05G002880	Watermelon (Charleston Gray)	wcgwcgB156
ClCG05G002880	Cucumber (Gy14) v1	cgywcgB540
ClCG05G002880	Cucumber (Gy14) v1	cgywcgB559
ClCG05G002880	Cucumber (Gy14) v1	cgywcgB617
ClCG05G002880	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G002880	Cucurbita maxima (Rimu)	cmawcgB319
ClCG05G002880	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G002880	Cucurbita maxima (Rimu)	cmawcgB799
ClCG05G002880	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G002880	Cucurbita moschata (Rifu)	cmowcgB315
ClCG05G002880	Cucurbita moschata (Rifu)	cmowcgB792
ClCG05G002880	Cucurbita moschata (Rifu)	cmowcgB794
ClCG05G002880	Wild cucumber (PI 183967)	cpiwcgB233
ClCG05G002880	Wild cucumber (PI 183967)	cpiwcgB235
ClCG05G002880	Wild cucumber (PI 183967)	cpiwcgB494
ClCG05G002880	Cucumber (Chinese Long) v2	cuwcgB470
ClCG05G002880	Melon (DHL92) v3.5.1	mewcgB122
ClCG05G002880	Watermelon (97103) v1	wcgwmB309
ClCG05G002880	Cucurbita pepo (Zucchini)	cpewcgB138
ClCG05G002880	Cucurbita pepo (Zucchini)	cpewcgB292
ClCG05G002880	Cucurbita pepo (Zucchini)	cpewcgB293
ClCG05G002880	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G002880	Bottle gourd (USVL1VR-Ls)	lsiwcgB022
ClCG05G002880	Bottle gourd (USVL1VR-Ls)	lsiwcgB341
ClCG05G002880	Bottle gourd (USVL1VR-Ls)	lsiwcgB401
ClCG05G002880	Cucumber (Gy14) v2	cgybwcgB211
ClCG05G002880	Cucumber (Gy14) v2	cgybwcgB213
ClCG05G002880	Cucumber (Gy14) v2	cgybwcgB431
ClCG05G002880	Melon (DHL92) v3.6.1	medwcgB117
ClCG05G002880	Melon (DHL92) v3.6.1	medwcgB424
ClCG05G002880	Silver-seed gourd	carwcgB0220
ClCG05G002880	Silver-seed gourd	carwcgB0602
ClCG05G002880	Silver-seed gourd	carwcgB1044
ClCG05G002880	Silver-seed gourd	carwcgB1045