ClCG05G001730 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G001730
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	LIM domain protein 2b
Location	CG_Chr05 : 1696776 .. 1698061 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTTGGAAAGCTACCGTTTTCGGTTCGAGTTCGTTGTCGTAAAAACACAGGAGGAATAAAGATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAGTTGCTTTCCCTTGAAGGGAATCCTTACCATAAGTCCTGCTTCAAATGTAGCCACTGCAAGGGCACCCTTTCGGTACGATCTTCTTTTTCGTTCATTTAATCGTTCATTCGCATAATGTCGTTTGTTATAATATCGATATTTGACTCGAGTCGATCGTTACGACAGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTGTAATATTATTATACTTCTTTTCCATCTCTTAATCACCAATTTTTCCTATCTTCCTAACATTCTCTCATTTTCGTTATATTGAAATGGCAACAGCCAAGCCTTCTGAGAAGCAAAATGATCTGGTATGCTATTCATTCTTTTCTTTTTCCATGCCCTCAAAAGTATTAAACAATTCGCGAGGACTCCAGTAGTACTCATTTGATAGTCAAGAATCATTATTTCTAAAATCACTCCCAAACATATCATAAAGCATAATAGATCTTTCCTTTTACATAGTTTACATATTAGGTCTCGTTTTATATAAATATTCTCGAATTCAATTCCTATAATTATTACGTATGGCTTCGTAACTTTCGAAATGTGTAGCAGTCAAGGGCTCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCGGTCTGCTCGAAAACGGTTTATCCGTTGGAGAAGGTCTATAGTTCTTCATTTTTTAAAGAAATTATATAAGTAGAATGTGACTAGATTTGTTGGCTAATTAAAAGTATGATCTAAATTTGATAAAAAAAAAAAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTTCATATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCATCATTTTGCTCAGCTCTTCATGATCAAAGGAAACTACAACCATGTCCTCGAAGCTGCTGCAAACAAGAAAGCTACCACACCGCCTCCGGAACCAGCGGAGGAAGAAGAGGCCGAGGCCGAAGCTCAGCCGCAGGCCGAGGAAGCAGCCGTAGAGCAAACTTAAGATGGGCTTCATTCTGCTTCCATCCACCATAAATTTGAGAATCCTTGGCTTTCTTGAT

mRNA sequence

TTTCTTGGAAAGCTACCGTTTTCGGTTCGAGTTCGTTGTCGTAAAAACACAGGAGGAATAAAGATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAGTTGCTTTCCCTTGAAGGGAATCCTTACCATAAGTCCTGCTTCAAATGTAGCCACTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCCAAGCCTTCTGAGAAGCAAAATGATCTGTCAAGGGCTCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCGGTCTGCTCGAAAACGGTTTATCCGTTGGAGAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTTCATATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCATCATTTTGCTCAGCTCTTCATGATCAAAGGAAACTACAACCATGTCCTCGAAGCTGCTGCAAACAAGAAAGCTACCACACCGCCTCCGGAACCAGCGGAGGAAGAAGAGGCCGAGGCCGAAGCTCAGCCGCAGGCCGAGGAAGCAGCCGTAGAGCAAACTTAAGATGGGCTTCATTCTGCTTCCATCCACCATAAATTTGAGAATCCTTGGCTTTCTTGAT

Coding sequence (CDS)

TTTCTTGGAAAGCTACCGTTTTCGGTTCGAGTTCGTTGTCGTAAAAACACAGGAGGAATAAAGATGTCATTCACAGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGAGTTGCTTTCCCTTGAAGGGAATCCTTACCATAAGTCCTGCTTCAAATGTAGCCACTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCCAAGCCTTCTGAGAAGCAAAATGATCTGTCAAGGGCTCCCAGCAAACTGTCCTCCATGTTCTCTGGAACTCAAGACAAATGCGCGGTCTGCTCGAAAACGGTTTATCCGTTGGAGAAGGTGACTCTTGAGGGGGAATGTTACCATAAGAATTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTTCATATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCATCATTTTGCTCAGCTCTTCATGATCAAAGGAAACTACAACCATGTCCTCGAAGCTGCTGCAAACAAGAAAGCTACCACACCGCCTCCGGAACCAGCGGAGGAAGAAGAGGCCGAGGCCGAAGCTCAGCCGCAGGCCGAGGAAGCAGCCGTAGAGCAAACTTAA

Protein sequence

FLGKLPFSVRVRCRKNTGGIKMSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEPAEEEEAEAEAQPQAEEAAVEQT

Homology

[Close]

BLAST of ClCG05G001730 vs. Swiss-Prot
Match: PLI2C_ARATH (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 5.8e-86
Identity = 146/208 (70.19%), Postives = 171/208 (82.21%), Query Frame = 1


Query: 23  SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 82
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 83  FEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVTL 142
           FEQLFKESGNFSKNFQT+  +EK ND ++AP++LSS FSGTQDKCA C KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 143 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKAT 202
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 203 TPPPEPAEEEEAEAE-AQPQAEEAAVEQ 230
           T   +  E +E EA   + +  +AA E+
Sbjct: 183 TAEEDKTEPKEDEANPTEEETSDAAAEE 210

[Close]

BLAST of ClCG05G001730 vs. Swiss-Prot
Match: PLI2B_ARATH (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 3.2e-84
Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQ  K  +   +L+R PSK+SS+F GTQDKCA C KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKP--ELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 201
           +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 202 --ATTPPPEPAEEEEAEAEAQPQAEEA 226
               T PPEP E+   EA+ +    E+
Sbjct: 181 ASGNTLPPEPTEDVAVEAKEENGVSES 205

[Close]

BLAST of ClCG05G001730 vs. Swiss-Prot
Match: PLI2A_ARATH (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.9e-81
Identity = 141/213 (66.20%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGN+SKNFQ  K  +  + L+R PSKLSS FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 201
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 202 -----ATTPPPEPAEEEEAEAEAQPQAEEAAVE 229
                  +PP +  + ++  +  + + ++AA E
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDAAPE 213

[Close]

BLAST of ClCG05G001730 vs. Swiss-Prot
Match: WLI2A_ARATH (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 3.7e-72
Identity = 124/200 (62.00%), Postives = 159/200 (79.50%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 82  HFEQLFKESGNFSKNFQT-SKP--SEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLE 141
           HFEQLFKESG+FSKNFQ+ +KP   +   +L+R PS+L+ MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 142 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 201
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 202 KKATTPPPEPAEEEEAEAEA 219
           K+AT      A    A  E+
Sbjct: 181 KRATAAATAAAAAVAAVPES 200

[Close]

BLAST of ClCG05G001730 vs. Swiss-Prot
Match: WLI2B_ARATH (LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.0e-70
Identity = 119/182 (65.38%), Postives = 153/182 (84.07%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 82  HFEQLFKESGNFSKNFQT-SKPSEKQN-DLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEK 141
           HFEQLFKESG+F+KNFQ+ +K ++K   +L+R PS+++  FSGTQ+KCA CSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 142 VTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANK 201
           VT+E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

[Close]

BLAST of ClCG05G001730 vs. TrEMBL
Match: A0A0A0L4A1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 3.8e-116
Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQ +KPSEKQNDLSRAPSKLSSMFSGTQDKCA CSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
            TPPPEPAEEEE   EAQPQA+EA VEQT
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADEAPVEQT 209

[Close]

BLAST of ClCG05G001730 vs. TrEMBL
Match: A0A0A0L6A8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122580 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 6.9e-102
Identity = 176/209 (84.21%), Postives = 192/209 (91.87%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQT K S+K NDL+R PSKLSSMFSGTQDKC+VC+KTVYPLEKV+
Sbjct: 61  HFEQLFKESGNFSKNFQT-KSSDKPNDLTRTPSKLSSMFSGTQDKCSVCTKTVYPLEKVS 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEAAANKK 
Sbjct: 121 LEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEAAANKKT 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
           TTP   PA+  + +AE  P++ E AVEQ+
Sbjct: 181 TTP---PADHTDEDAEPSPRSGEQAVEQS 205

[Close]

BLAST of ClCG05G001730 vs. TrEMBL
Match: V7B4U4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G067500g PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.3e-97
Identity = 163/203 (80.30%), Postives = 186/203 (91.63%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGCLTMSTYSSMDGVLYCKP 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQT++ S+KQN++++ P++LSSMFSGT DKC+VCSKTVYPLEK+T
Sbjct: 61  HFEQLFKESGNFSKNFQTARSSDKQNEVNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHKNCFRCAH GCHLTHSSYAALDGVLYC+HHF QLFM KGNY+HVL+AAAN+K 
Sbjct: 121 LEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKN 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEE 225
            TPPPEPAEEEEA    +P+ EE
Sbjct: 181 ATPPPEPAEEEEAPKPEEPEEEE 203

[Close]

BLAST of ClCG05G001730 vs. TrEMBL
Match: A0A0L9U419_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.1e-96
Identity = 165/210 (78.57%), Postives = 188/210 (89.52%), Query Frame = 1


Query: 21  KMSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCK 80
           KMSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK
Sbjct: 409 KMSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCK 468

Query: 81  THFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 140
            HFEQLFKESGNFSKNFQT++ SEKQN++++ P++LSSMFSGT DKC+VCSKTVYPLEK+
Sbjct: 469 PHFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKM 528

Query: 141 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 200
           TLEGECYHK CFRCAH GCHLTHSSYA+LDGVLYC+HHF QLFM KGNY+HVL+AAAN+K
Sbjct: 529 TLEGECYHKTCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRK 588

Query: 201 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
             TPPPEPAEEEE      P+ EEA  E+T
Sbjct: 589 NATPPPEPAEEEE-----PPKPEEAEQEET 613

[Close]

BLAST of ClCG05G001730 vs. TrEMBL
Match: A0A0L9U419_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.1e-18
Identity = 49/106 (46.23%), Postives = 66/106 (62.26%), Query Frame = 1


Query: 95  KNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVTLEGECYHKNCFRC 154
           KN  TS+   +    S    K    F+GT DKC  C KTVY ++ +TLEG  YHKNCFRC
Sbjct: 387 KNRNTSQKIPEPCFASFLRRKAKMSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRC 446

Query: 155 AHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 201
           +H   +LT S+Y+++DGVLYCK HF QLF   GN++   + A + +
Sbjct: 447 SHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTARSSE 492

HSP 2 Score: 359.0 bits (920), Expect = 4.3e-96
Identity = 164/209 (78.47%), Postives = 187/209 (89.47%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVV+LL+LEG PYHK+CF+CSHCKG L+MS+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFRCSHCKGYLTMSTYSSMDGVLYCKP 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQT++ SEKQN++++ P++LSSMFSGT DKC+VCSKTVYPLEK+T
Sbjct: 61  HFEQLFKESGNFSKNFQTARSSEKQNEMNKTPNRLSSMFSGTLDKCSVCSKTVYPLEKMT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHK CFRCAH GCHLTHSSYA+LDGVLYC+HHF QLFM KGNY+HVL+AAAN+K 
Sbjct: 121 LEGECYHKTCFRCAHAGCHLTHSSYASLDGVLYCRHHFQQLFMEKGNYHHVLQAAANRKN 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
            TPPPEPAEEEE      P+ EEA  E+T
Sbjct: 181 ATPPPEPAEEEE-----PPKPEEAEQEET 204

[Close]

BLAST of ClCG05G001730 vs. TAIR10
Match: AT3G61230.1 (AT3G61230.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 318.5 bits (815), Expect = 3.3e-87
Identity = 146/208 (70.19%), Postives = 171/208 (82.21%), Query Frame = 1


Query: 23  SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 82
           +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 83  FEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVTL 142
           FEQLFKESGNFSKNFQT+  +EK ND ++AP++LSS FSGTQDKCA C KTVYPLEK+T+
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 143 EGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKAT 202
           EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 203 TPPPEPAEEEEAEAE-AQPQAEEAAVEQ 230
           T   +  E +E EA   + +  +AA E+
Sbjct: 183 TAEEDKTEPKEDEANPTEEETSDAAAEE 210

[Close]

BLAST of ClCG05G001730 vs. TAIR10
Match: AT1G01780.1 (AT1G01780.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 312.8 bits (800), Expect = 1.8e-85
Identity = 144/207 (69.57%), Postives = 166/207 (80.19%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQ  K  +   +L+R PSK+SS+F GTQDKCA C KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGKTEKP--ELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 201
           +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 202 --ATTPPPEPAEEEEAEAEAQPQAEEA 226
               T PPEP E+   EA+ +    E+
Sbjct: 181 ASGNTLPPEPTEDVAVEAKEENGVSES 205

[Close]

BLAST of ClCG05G001730 vs. TAIR10
Match: AT2G45800.1 (AT2G45800.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-82
Identity = 141/213 (66.20%), Postives = 167/213 (78.40%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGN+SKNFQ  K  +  + L+R PSKLSS FSGTQDKCA C KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK- 201
           +EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 202 -----ATTPPPEPAEEEEAEAEAQPQAEEAAVE 229
                  +PP +  + ++  +  + + ++AA E
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDAAPE 213

[Close]

BLAST of ClCG05G001730 vs. TAIR10
Match: AT2G39900.1 (AT2G39900.1 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 272.7 bits (696), Expect = 2.1e-73
Identity = 124/200 (62.00%), Postives = 159/200 (79.50%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 82  HFEQLFKESGNFSKNFQT-SKP--SEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLE 141
           HFEQLFKESG+FSKNFQ+ +KP   +   +L+R PS+L+ MFSGTQDKCA C+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 142 KVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAAN 201
           KVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 202 KKATTPPPEPAEEEEAEAEA 219
           K+AT      A    A  E+
Sbjct: 181 KRATAAATAAAAAVAAVPES 200

[Close]

BLAST of ClCG05G001730 vs. TAIR10
Match: AT3G55770.7 (AT3G55770.7 GATA type zinc finger transcription factor family protein)

HSP 1 Score: 240.4 bits (612), Expect = 1.1e-63
Identity = 117/216 (54.17%), Postives = 151/216 (69.91%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 82  HFEQLFKESGNFSKNFQT-SKPSEKQN-DLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEK 141
           HFEQLFKESG+F+KNFQ+ +K ++K   +L+R PS+++  FSGTQ+KCA CSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 142 VTLE----------------------GECYH------------KNCFRCAHGGCHLTHSS 201
           +                         G CY             K+CF+C+HGGC ++ S+
Sbjct: 121 IHNPLSYRELARKPNVLHRCIDPGDIGSCYFNLHVTVESQTYHKSCFKCSHGGCPISPSN 180

[Close]

BLAST of ClCG05G001730 vs. NCBI nr
Match: gi|778677278|ref|XP_011650764.1| (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus])

HSP 1 Score: 425.6 bits (1093), Expect = 5.4e-116
Identity = 199/209 (95.22%), Postives = 201/209 (96.17%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQ +KPSEKQNDLSRAPSKLSSMFSGTQDKCA CSKTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
            TPPPEPAEEEE   EAQPQA+EA VEQT
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADEAPVEQT 209

[Close]

BLAST of ClCG05G001730 vs. NCBI nr
Match: gi|659075313|ref|XP_008438078.1| (PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo])

HSP 1 Score: 424.9 bits (1091), Expect = 9.2e-116
Identity = 200/209 (95.69%), Postives = 203/209 (97.13%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQ +KPSEKQNDLSRAPSKLSSMFSGTQDKCA C+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
           TTPPPEPAEEEE   EAQPQA+E AVEQT
Sbjct: 181 TTPPPEPAEEEEGATEAQPQADE-AVEQT 208

[Close]

BLAST of ClCG05G001730 vs. NCBI nr
Match: gi|778677275|ref|XP_004134333.2| (PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 421.0 bits (1081), Expect = 1.3e-114
Identity = 199/210 (94.76%), Postives = 201/210 (95.71%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDL-SRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 141
           HFEQLFKESGNFSKNFQ +KPSEKQNDL SRAPSKLSSMFSGTQDKCA CSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACSKTVYPLEKV 120

Query: 142 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 201
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 202 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
           A TPPPEPAEEEE   EAQPQA+EA VEQT
Sbjct: 181 APTPPPEPAEEEEGATEAQPQADEAPVEQT 210

[Close]

BLAST of ClCG05G001730 vs. NCBI nr
Match: gi|659075311|ref|XP_008438077.1| (PREDICTED: pollen-specific protein SF3-like isoform X1 [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.3e-114
Identity = 200/210 (95.24%), Postives = 203/210 (96.67%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDL-SRAPSKLSSMFSGTQDKCAVCSKTVYPLEKV 141
           HFEQLFKESGNFSKNFQ +KPSEKQNDL SRAPSKLSSMFSGTQDKCA C+KTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLQSRAPSKLSSMFSGTQDKCAACTKTVYPLEKV 120

Query: 142 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 201
           TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK
Sbjct: 121 TLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 202 ATTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
           ATTPPPEPAEEEE   EAQPQA+E AVEQT
Sbjct: 181 ATTPPPEPAEEEEGATEAQPQADE-AVEQT 209

[Close]

BLAST of ClCG05G001730 vs. NCBI nr
Match: gi|659075295|ref|XP_008438068.1| (PREDICTED: pollen-specific protein SF3-like [Cucumis melo])

HSP 1 Score: 384.4 bits (986), Expect = 1.4e-103
Identity = 179/209 (85.65%), Postives = 193/209 (92.34%), Query Frame = 1


Query: 22  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 81
           M+FTGTLDKCKACDKTVYVV+LL+LEGNPYHK+CFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MAFTGTLDKCKACDKTVYVVDLLTLEGNPYHKNCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 82  HFEQLFKESGNFSKNFQTSKPSEKQNDLSRAPSKLSSMFSGTQDKCAVCSKTVYPLEKVT 141
           HFEQLFKESGNFSKNFQT KPSE+QNDL+R PSKLSSMF GTQDKC+VC+KTVYPLEKVT
Sbjct: 61  HFEQLFKESGNFSKNFQT-KPSERQNDLTRTPSKLSSMFCGTQDKCSVCTKTVYPLEKVT 120

Query: 142 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 201
           LEGECYHK CFRCAHGGCHLTH SYAALDGVLYCKHHFAQLFM+KGNYNHVLEAAANKK 
Sbjct: 121 LEGECYHKKCFRCAHGGCHLTHCSYAALDGVLYCKHHFAQLFMVKGNYNHVLEAAANKKT 180

Query: 202 TTPPPEPAEEEEAEAEAQPQAEEAAVEQT 231
           TTP   PAE  + +AE  P++ E AVEQ+
Sbjct: 181 TTP---PAEHTDEDAEPSPRSGEQAVEQS 205

The following BLAST results are available for this feature:

BLAST of ClCG05G001730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PLI2C_ARATH	5.8e-86	70.19	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana GN=PLIM2C PE=1 SV=1	[more]
PLI2B_ARATH	3.2e-84	69.57	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana GN=PLIM2B PE=1 SV=1	[more]
PLI2A_ARATH	1.9e-81	66.20	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana GN=PLIM2A PE=1 SV=1	[more]
WLI2A_ARATH	3.7e-72	62.00	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana GN=WLIN2A PE=1 SV=1	[more]
WLI2B_ARATH	2.0e-70	65.38	LIM domain-containing protein WLIM2b OS=Arabidopsis thaliana GN=WLIM2B PE=1 SV=1	[more]

BLAST of ClCG05G001730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4A1_CUCSA	3.8e-116	95.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122620 PE=4 SV=1	[more]
A0A0A0L6A8_CUCSA	6.9e-102	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122580 PE=4 SV=1	[more]
V7B4U4_PHAVU	1.3e-97	80.30	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G067500g PE=4 SV=1	[more]
A0A0L9U419_PHAAN	1.1e-96	78.57	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1	[more]
A0A0L9U419_PHAAN	2.1e-18	46.23	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g053500 PE=4 SV=1	[more]

BLAST of ClCG05G001730 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G61230.1	3.3e-87	70.19	GATA type zinc finger transcription factor family protein	[more]
AT1G01780.1	1.8e-85	69.57	GATA type zinc finger transcription factor family protein	[more]
AT2G45800.1	1.1e-82	66.20	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.1e-73	62.00	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.7	1.1e-63	54.17	GATA type zinc finger transcription factor family protein	[more]

BLAST of ClCG05G001730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778677278\|ref\|XP_011650764.1\|	5.4e-116	95.22	PREDICTED: LIM domain-containing protein PLIM2b-like isoform X2 [Cucumis sativus...	[more]
gi\|659075313\|ref\|XP_008438078.1\|	9.2e-116	95.69	PREDICTED: pollen-specific protein SF3-like isoform X2 [Cucumis melo]	[more]
gi\|778677275\|ref\|XP_004134333.2\|	1.3e-114	94.76	PREDICTED: LIM domain-containing protein PLIM2b-like isoform X1 [Cucumis sativus...	[more]
gi\|659075311\|ref\|XP_008438077.1\|	2.3e-114	95.24	PREDICTED: pollen-specific protein SF3-like isoform X1 [Cucumis melo]	[more]
gi\|659075295\|ref\|XP_008438068.1\|	1.4e-103	85.65	PREDICTED: pollen-specific protein SF3-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001781	Znf_LIM

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009247	glycolipid biosynthetic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009707	chloroplast outer membrane
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008194	UDP-glycosyltransferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G001730.1	ClCG05G001730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	GENE3D	G3DSA:2.10.110.10		coord: 25..92 score: 2.2E-21coord: 120..189 score: 6.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 127..182 score: 2.4E-10coord: 31..86 score: 4.0
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 30..82 score: 1.1E-12coord: 126..178 score: 7.2
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 31..65 scor
IPR001781	Zinc finger, LIM-type	PROFILE	PS50023	LIM_DOMAIN_2	coord: 125..185 score: 12.375coord: 29..89 score: 13
None	No IPR available	PANTHER	PTHR24206	FAMILY NOT NAMED	coord: 20..229 score: 1.4E
None	No IPR available	PANTHER	PTHR24206:SF22	PROTEIN PLIM2A	coord: 20..229 score: 1.4E
None	No IPR available	unknown	SSF57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 24..56 score: 1.49E-8coord: 119..152 score: 2.28E-9coord: 57..97 score: 6.32E-15coord: 153..192 score: 1.06

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G001730	CmaCh06G010970	Cucurbita maxima (Rimu)	cmawcgB737

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G001730	Watermelon (97103) v2	wcgwmbB229
ClCG05G001730	Wax gourd	wcgwgoB430
ClCG05G001730	Watermelon (Charleston Gray)	wcgwcgB154
ClCG05G001730	Cucumber (Gy14) v1	cgywcgB451
ClCG05G001730	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G001730	Cucurbita maxima (Rimu)	cmawcgB563
ClCG05G001730	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G001730	Cucurbita moschata (Rifu)	cmowcgB363
ClCG05G001730	Cucurbita moschata (Rifu)	cmowcgB560
ClCG05G001730	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G001730	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G001730	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G001730	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G001730	Melon (DHL92) v3.5.1	mewcgB433
ClCG05G001730	Watermelon (97103) v1	wcgwmB286
ClCG05G001730	Watermelon (97103) v1	wcgwmB290
ClCG05G001730	Cucurbita pepo (Zucchini)	cpewcgB044
ClCG05G001730	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G001730	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G001730	Bottle gourd (USVL1VR-Ls)	lsiwcgB335
ClCG05G001730	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G001730	Melon (DHL92) v3.6.1	medwcgB416
ClCG05G001730	Silver-seed gourd	carwcgB0602
ClCG05G001730	Silver-seed gourd	carwcgB0630
ClCG05G001730	Cucumber (Chinese Long) v3	cucwcgB225