ClCG05G001610 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G001610
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 1603906 .. 1605493 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCTAGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGTAACTTCTAATAATGGATTAATTTTTCGAATAAACTGTTTGTACGTTCCAGTTGATTCACTTTCGTGGTTCTTATACTACTGTTCTTACTTGGGCGAATTGATTAGGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTAAGTCTCCCTCTTTCTCTCCATGGAATCGAGAAAATCTTCATTGATTAAAAAATATTGAAGTTAGGGGCAGAGATTGCTTATTGTTTCTGTTTGGTTTACACTTCATCTGGGAATTTTCTCATACGGGTAATGTTCTAGTTTTCACTTATTCCAATAGCATAACCCACGAGCATTTTGTCCACTAAGATTGAGAAGTTTAATGACTTCCTACTGCATGATTTTTTTGGATAAGATTGAGAAGTTTAACGACTTCCTACTGCATGATTTTTCTGGATAATTAGGCAATACTCGATGGATTTGGAACAAGTTCTGTTTGCTGTTCGTGTTCTTTTAATACCATTCGAAAGTCTTATGATTTTCGTATAATTATGTTCTTAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGAGGTTTGATGTGTATATTTTTTGGACTTGTATTGGTGAATTGATATATTTAGTCTTCTGATTTGTAATAGAAAGAAAATCCTCCATTCATAGTAAGCTCTGATCTTCCACTTACTCTCTTTTGATCTCTAATGTCATGGTGCCGTATTCGAATCTGATTTATAATTGATTCTTATACTGATATACTAATCTTTAATTATCTAATACGCAATGCTAGAATGAATTTAAAGAAAATACTCCATCATTTGAACTCGGAAGCTTGTTTGCTCTGTCAAGAATCTCTCTTTTCTTTCTTTCTTTCTTACTTTCTTTGGTGTACAAACAAAAAGTAAACCTATCTGCTCAATCTTGAATCATATTACCAGCTGTATCGAATCATTTCATTCCTTCATGAGTGTCTTCTAACGTGAATGTATTTAGATATTCGAATTTCAACGTATTTGGTTGTTTAATTTGAACTGGAAATTATGTTGTGTCTTTTGATTGGATGAAACTGTTTTTATTCTCATTATCTAGAGATTGGCAATGGTGGCAGTGGCAGAATCTTCAGGGTTCCCATTAGCCCTTCGATTTGGAGAAAATCTGGTGAAATGCATTGCATTATTTGCTCTCGAGTAATTTATCGTTGGGGATCGGATATTTTTCTCATTCTTTTAGATCGGAGTACTTTCGTGTAATGTAATTCGGGTAGTTCCCTTTTGACCTTTTTTCTTCTTTTTGGTAGGTCCTTGTACATTATTTCACATTTCTCAATGAAAACTCACTTTCTTATTAAGGAAATATA

mRNA sequence

GGGCTAGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGAGAGATTGGCAATGGTGGCAGTGGCAGAATCTTCAGGGTTCCCATTAGCCCTTCGATTTGGAGAAAATCTGGTGAAATGCATTGCATTATTTGCTCTCGAGTAATTTATCGTTGGGGATCGGATATTTTTCTCATTCTTTTAGATCGGAGTACTTTCGTGTAATGTAATTCGGGTAGTTCCCTTTTGACCTTTTTTCTTCTTTTTGGTAGGTCCTTGTACATTATTTCACATTTCTCAATGAAAACTCACTTTCTTATTAAGGAAATATA

Coding sequence (CDS)

ATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

Protein sequence

MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK

Homology

[Close]

BLAST of ClCG05G001610 vs. TrEMBL
Match: A0A0A0L493_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.7e-35
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. TrEMBL
Match: A0A059CHY1_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-31
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1   MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
           MSKKN+LSRRKKQYEFDL+REK EKEK  KKLQ KKNKMKVDGSGKKKKG GGFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTAAAKAKASQAMELDK 82
           VKTKLTA AKAKA+QAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of ClCG05G001610 vs. TrEMBL
Match: I1JK99_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-30
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNNL++RKKQYEFDLQREKQEK K  +KL AKKNKMKVDGSGKKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. TrEMBL
Match: I1KIC3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.4e-30
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNNL++RKKQYEFDLQREKQEK K  +KL AKKNKMKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. TrEMBL
Match: A0A0B2QZ50_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 9.4e-30
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNNL++RKKQYEFDLQREKQEK K  +KL AKKNKMKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. TAIR10
Match: AT2G45860.1 (AT2G45860.1 unknown protein)

HSP 1 Score: 116.7 bits (291), Expect = 6.7e-27
Identity = 59/80 (73.75%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNNL++RKKQ+E++LQ+EK+ ++K  KKL A KNKMKVDGSGKKKK  GGF VGKKK
Sbjct: 1  MSKKNNLAKRKKQHEYNLQKEKELQDKKIKKLHANKNKMKVDGSGKKKK--GGFSVGKKK 60

Query: 61 VKTKLTAAAKAKASQAMELD 81
          +KTKLT  AKAKA+QAMELD
Sbjct: 61 LKTKLTPTAKAKAAQAMELD 78

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: gi|700201390|gb|KGN56523.1| (hypothetical protein Csa_3G122470 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 1.4e-34
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRKKQYEFDLQREKQEKEKAAKKLQAKKN MKVDGSGKKKKGGGGFQVGKKK
Sbjct: 1  MSKKNSLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNSMKVDGSGKKKKGGGGFQVGKKK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKASQAMELDK
Sbjct: 61 VKTKLTATAKAKASQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: gi|629113098|gb|KCW78058.1| (hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1   MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
           MSKKN+LSRRKKQYEFDL+REK EKEK  KKLQ KKNKMKVDGSGKKKKG GGFQVGK+K
Sbjct: 42  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 101

Query: 61  VKTKLTAAAKAKASQAMELDK 82
           VKTKLTA AKAKA+QAMELDK
Sbjct: 102 VKTKLTALAKAKAAQAMELDK 122

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: gi|702326796|ref|XP_010053693.1| (PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis])

HSP 1 Score: 141.4 bits (355), Expect = 7.2e-31
Identity = 71/81 (87.65%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKN+LSRRKKQYEFDL+REK EKEK  KKLQ KKNKMKVDGSGKKKKG GGFQVGK+K
Sbjct: 1  MSKKNSLSRRKKQYEFDLRREKAEKEKKEKKLQTKKNKMKVDGSGKKKKGAGGFQVGKRK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: gi|571443846|ref|XP_006576335.1| (PREDICTED: uncharacterized protein LOC100782399 [Glycine max])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-30
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNNL++RKKQYEFDLQREKQEK K  +KL AKKNKMKVDGSGKKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSGKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

[Close]

BLAST of ClCG05G001610 vs. NCBI nr
Match: gi|955328203|ref|XP_014632806.1| (PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-29
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1


Query: 1  MSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKK 60
          MSKKNNL++RKKQYEFDLQREKQEK K  +KL AKKNKMKVDGS KKKKGG GFQVGK+K
Sbjct: 1  MSKKNNLAKRKKQYEFDLQREKQEKIKKEQKLHAKKNKMKVDGSDKKKKGGSGFQVGKRK 60

Query: 61 VKTKLTAAAKAKASQAMELDK 82
          VKTKLTA AKAKA+QAMELDK
Sbjct: 61 VKTKLTALAKAKAAQAMELDK 81

The following BLAST results are available for this feature:

BLAST of ClCG05G001610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L493_CUCSA	9.7e-35	96.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122470 PE=4 SV=1	[more]
A0A059CHY1_EUCGR	5.0e-31	87.65	Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_D02281 PE=4 ...	[more]
I1JK99_SOYBN	1.5e-30	86.42	Uncharacterized protein OS=Glycine max GN=GLYMA_03G011100 PE=4 SV=1	[more]
I1KIC3_SOYBN	9.4e-30	85.19	Uncharacterized protein OS=Glycine max GN=GLYMA_07G072200 PE=4 SV=1	[more]
A0A0B2QZ50_GLYSO	9.4e-30	85.19	Uncharacterized protein OS=Glycine soja GN=glysoja_031058 PE=4 SV=1	[more]

BLAST of ClCG05G001610 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45860.1	6.7e-27	73.75	unknown protein	[more]

BLAST of ClCG05G001610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700201390\|gb\|KGN56523.1\|	1.4e-34	96.30	hypothetical protein Csa_3G122470 [Cucumis sativus]	[more]
gi\|629113098\|gb\|KCW78058.1\|	7.2e-31	87.65	hypothetical protein EUGRSUZ_D02281, partial [Eucalyptus grandis]	[more]
gi\|702326796\|ref\|XP_010053693.1\|	7.2e-31	87.65	PREDICTED: uncharacterized protein LOC104442091 [Eucalyptus grandis]	[more]
gi\|571443846\|ref\|XP_006576335.1\|	2.1e-30	86.42	PREDICTED: uncharacterized protein LOC100782399 [Glycine max]	[more]
gi\|955328203\|ref\|XP_014632806.1\|	1.4e-29	85.19	PREDICTED: uncharacterized protein LOC100500376 isoform X1 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G001610.1	ClCG05G001610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..42 scor
None	No IPR available	PANTHER	PTHR36745	FAMILY NOT NAMED	coord: 2..81 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G001610	CsaV3_3G008990	Cucumber (Chinese Long) v3	cucwcgB225

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G001610	Silver-seed gourd	carwcgB0376
ClCG05G001610	Silver-seed gourd	carwcgB0474
ClCG05G001610	Watermelon (97103) v2	wcgwmbB229
ClCG05G001610	Wax gourd	wcgwgoB430
ClCG05G001610	Watermelon (Charleston Gray)	wcgwcgB154
ClCG05G001610	Cucumber (Gy14) v1	cgywcgB451
ClCG05G001610	Cucurbita maxima (Rimu)	cmawcgB233
ClCG05G001610	Cucurbita maxima (Rimu)	cmawcgB563
ClCG05G001610	Cucurbita maxima (Rimu)	cmawcgB737
ClCG05G001610	Cucurbita maxima (Rimu)	cmawcgB740
ClCG05G001610	Cucurbita moschata (Rifu)	cmowcgB219
ClCG05G001610	Cucurbita moschata (Rifu)	cmowcgB363
ClCG05G001610	Cucurbita moschata (Rifu)	cmowcgB560
ClCG05G001610	Cucurbita moschata (Rifu)	cmowcgB743
ClCG05G001610	Cucurbita moschata (Rifu)	cmowcgB744
ClCG05G001610	Wild cucumber (PI 183967)	cpiwcgB226
ClCG05G001610	Cucumber (Chinese Long) v2	cuwcgB222
ClCG05G001610	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G001610	Melon (DHL92) v3.5.1	mewcgB433
ClCG05G001610	Watermelon (97103) v1	wcgwmB286
ClCG05G001610	Watermelon (97103) v1	wcgwmB290
ClCG05G001610	Cucurbita pepo (Zucchini)	cpewcgB044
ClCG05G001610	Cucurbita pepo (Zucchini)	cpewcgB559
ClCG05G001610	Cucurbita pepo (Zucchini)	cpewcgB680
ClCG05G001610	Cucurbita pepo (Zucchini)	cpewcgB786
ClCG05G001610	Cucurbita pepo (Zucchini)	cpewcgB787
ClCG05G001610	Bottle gourd (USVL1VR-Ls)	lsiwcgB335
ClCG05G001610	Cucumber (Gy14) v2	cgybwcgB203
ClCG05G001610	Melon (DHL92) v3.6.1	medwcgB416