ClCG04G004630 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G004630
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	leucine-rich repeat/extensin 1 LENGTH=744
Location	CG_Chr04 : 17745356 .. 17745715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA

mRNA sequence

ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA

Coding sequence (CDS)

ATGCCAAAATTTGATATGTATTCTAAAGGCCGCGTACCTATTCTTCCACCGGTCAACTCACATTCAACTCTACCACCTACTCCATTCACTGTTCTAGAAAAGGAATCGAAATTCAAATTTGGAATGTATCCTAAAGGTGTACCTATTCCTCCATCTGGACCGAGTGGAAGAACTTCGGCTGGCAAATATACTCCTCCGCCACCTCCATCTACGCCAAGTGAACGACCACGCTTTCCATGGGATGCACCTTGTCACCGTCCTAATCCGCCACGCTACTGCGTCCTATTACGACCACCGCCGCCATCCCCTCACTCTAGAGCTCCAATCATCGTTGATGTGATTACAAGTGTTGAGGATTAA

Protein sequence

MPKFDMYSKGRVPILPPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGKYTPPPPPSTPSERPRFPWDAPCHRPNPPRYCVLLRPPPPSPHSRAPIIVDVITSVED

Homology

[Close]

BLAST of ClCG04G004630 vs. TrEMBL
Match: A0A061FHV4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_035454 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 46/102 (45.10%), Postives = 52/102 (50.98%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSHSTL----PPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTS 63
           F ++ KG VPI P   S  T     PP P  +L       FGM+PKGVPIPPSGPS RTS
Sbjct: 36  FGVFPKG-VPIPPSGPSRRTSASPPPPPPIRLLN------FGMFPKGVPIPPSGPSRRTS 95

Query: 64  AGKYTPPPPPSTPSERPRFPWDAPCHRPNPPRYCVLLRPPPP 102
           A    PPPPP+       FP   P   P+ P       PPPP
Sbjct: 96  AS--PPPPPPTGLLNFGTFPKGVPI-PPSGPSRGTSASPPPP 127

[Close]

BLAST of ClCG04G004630 vs. TrEMBL
Match: A0A0D2NUV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G237900 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 38/70 (54.29%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 3  KFDMYSKGRVPILPPVNSHST-LPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
          +F M  KG VPI P  +S S   PP   T L      KFGM PKGVPIPPSGPS  TS  
Sbjct: 26 RFGMLPKG-VPIPPSASSTSLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRHTSDS 85

Query: 63 KYTPPPPPST 72
             PPPPP T
Sbjct: 86 --PPPPPPLT 92

[Close]

BLAST of ClCG04G004630 vs. TrEMBL
Match: A0A0D2NUV0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G237900 PE=4 SV=1)

HSP 1 Score: 35.4 bits (80), Expect = 5.7e+01
Identity = 27/74 (36.49%), Postives = 32/74 (43.24%), Query Frame = 1


Query: 35  ESKFKFGMYPKGVPIPPSGPSGRTSAGKYTPPPPP-------STPSERPRFPWDAPCHRP 94
           ++  +FGM PKGVPIPPS  S  TS     P PP        S   +    P   P    
Sbjct: 22  DATLRFGMLPKGVPIPPSASS--TS----LPFPPMILTSLSLSKSLKFGMLPKGVPIPPS 81

Query: 95  NPPRYCVLLRPPPP 102
            P R+     PPPP
Sbjct: 82  GPSRHTSDSPPPPP 89

HSP 2 Score: 58.9 bits (141), Expect = 4.8e-06
Identity = 37/99 (37.37%), Postives = 41/99 (41.41%), Query Frame = 1


Query: 12  VPILPPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGKYTPPPPPST 71
           VP  PP+      PP P               P  VP PP     RT A  Y PPPPPS 
Sbjct: 397 VPPPPPLPPTRPPPPPPTR-------------PPYVPPPPPSQPPRTPAPPYVPPPPPSP 456

Query: 72  PSERPRFPWDAPCHRPNPPRYCVLLRPPPPSPHSRAPII 111
           P+  P  P   P     PP     + PPPPSP +R P I
Sbjct: 457 PTRPPYIPPPPPSPPTRPP----YIPPPPPSPPTRPPYI 478

[Close]

BLAST of ClCG04G004630 vs. TrEMBL
Match: B9RB38_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1510820 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-06
Identity = 44/106 (41.51%), Postives = 49/106 (46.23%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGKY 63
           F M  KG VPI P   S  + PP   T         FGM PKGVPIPPSGPS RTS    
Sbjct: 112 FGMLPKG-VPIPPSGPSRRSPPPPALTGNPFNKNLNFGMLPKGVPIPPSGPSERTS---- 171

Query: 64  TPPPPPSTPSERPRFPWDAPCHR-----PNPPRYCVLLR--PPPPS 103
               PPS   ++ R       H+     P+ P Y  LL   P PPS
Sbjct: 172 ---EPPSPLFKKRRLGTFGMLHKRDPTQPSTPSYFHLLHKGPVPPS 209

[Close]

BLAST of ClCG04G004630 vs. TrEMBL
Match: B9RB38_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1510820 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-06
Identity = 43/100 (43.00%), Postives = 47/100 (47.00%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSH-STLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F M  KG VPI P   S  S++P  P   L K S   FGM PKGVPIPPSGPS R+    
Sbjct: 48  FGMLPKG-VPIPPSGPSRRSSIPSPPPPPLVKPSNLNFGMLPKGVPIPPSGPSRRS---- 107

Query: 64  YTPPPPPSTPSERPRFPWDAPCHRPNPPRYCVLLRPPPPS 103
              PPP S        P   P     P R      PPPP+
Sbjct: 108 ---PPPFSKGLSFGMLPKGVPIPPSGPSR----RSPPPPA 135

HSP 2 Score: 52.8 bits (125), Expect = 3.4e-04
Identity = 41/113 (36.28%), Postives = 46/113 (40.71%), Query Frame = 1


Query: 24  LPPTPFTVLEKES---------KFKFGMYPKGVPIPPSGPSGRTSAGKYTPPP------- 83
           L PT  TV+  E          +  FGM PKGVPIPPSGPS R+S     PPP       
Sbjct: 23  LCPTQTTVVYGEGMNADPLSMKRLHFGMLPKGVPIPPSGPSRRSSIPSPPPPPLVKPSNL 82

Query: 84  -----------PPSTPSERPRFPWD-------APCHRPNPPRYCVLLRPPPPS 103
                      PPS PS R   P+         P   P PP       PPPP+
Sbjct: 83  NFGMLPKGVPIPPSGPSRRSPPPFSKGLSFGMLPKGVPIPPSGPSRRSPPPPA 135

HSP 3 Score: 50.1 bits (118), Expect = 2.2e-03
Identity = 42/102 (41.18%), Postives = 46/102 (45.10%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSHSTLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGKY 63
           F M  KG VPI  P +  S   P PF+         FGM PKGVPIPPSGPS R      
Sbjct: 84  FGMLPKG-VPI--PPSGPSRRSPPPFS-----KGLSFGMLPKGVPIPPSGPSRR------ 143

Query: 64  TPPPPPST--PSERPRFPWDAPCHRPNPPRYCVLLRPPPPSP 104
           +PPPP  T  P  +       P   P PP         PPSP
Sbjct: 144 SPPPPALTGNPFNKNLNFGMLPKGVPIPPSGPSERTSEPPSP 171

[Close]

BLAST of ClCG04G004630 vs. NCBI nr
Match: gi|778697779|ref|XP_011654399.1| (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis sativus])

HSP 1 Score: 72.8 bits (177), Expect = 4.6e-10
Identity = 48/105 (45.71%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSHS-TLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F +Y KG +P   P    S + PP PF +L+K  KF FGMYPKG+PIPPSGPS RTS   
Sbjct: 47  FKVYPKGIIPPSGPSQRTSDSSPPPPFNILQK--KFDFGMYPKGIPIPPSGPSQRTSD-- 106

Query: 64  YTPPPPPSTPSERPRFPWDAPCHR-PNPPR----YCVLLRPPPPS 103
            + PPPPS       F +     R P PP           PPPPS
Sbjct: 107 -SSPPPPSNFFHHNTFGFGMYQRRVPIPPSGLNPRTSYSPPPPPS 146

[Close]

BLAST of ClCG04G004630 vs. NCBI nr
Match: gi|659083299|ref|XP_008442275.1| (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-09
Identity = 49/103 (47.57%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSHS-TLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAGK 63
           F MY KG VP   P    S + PP PF +L+  +KF FGMYPKG+ +PPSGPS RTS   
Sbjct: 54  FKMYPKGIVPPSGPSQRTSDSSPPPPFNILQ--NKFDFGMYPKGI-VPPSGPSQRTSDS- 113

Query: 64  YTPPPPPSTPSER-PRFPWDAPCHRPNPPRYCVLLRPPPPSPH 105
            +PPPP +   ER  R P   P   PNP        PPPP  H
Sbjct: 114 -SPPPPSNFFEERFGRVP--VPPSGPNP---TTSDSPPPPPSH 146

[Close]

BLAST of ClCG04G004630 vs. NCBI nr
Match: gi|731399706|ref|XP_010653709.1| (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Vitis vinifera])

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-09
Identity = 50/119 (42.02%), Postives = 56/119 (47.06%), Query Frame = 1


Query: 3   KFDMYSKGRVPILPPVNSHSTL-PPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
           +F M  KG VPI P   S  T  PP P     + S F+FGM PKG PIPPSGPS R   G
Sbjct: 68  RFGMLPKG-VPIPPSGPSQRTSDPPPPPQPFARASVFRFGMLPKGDPIPPSGPSHR---G 127

Query: 63  KYTPPPPPS-----------TPSERPRFPWDAPCHRPNPPRYCVLLRPPPPSPHSRAPI 110
             TPPPP S            P   P  P   P  R + P       PPPP P +RA +
Sbjct: 128 SETPPPPHSFARGPTLRFGMLPKGDP-IPPSGPSQRTSDP-------PPPPQPFARASV 174

[Close]

BLAST of ClCG04G004630 vs. NCBI nr
Match: gi|731399706|ref|XP_010653709.1| (PREDICTED: proline-rich protein HaeIII subfamily 1-like [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-07
Identity = 49/115 (42.61%), Postives = 56/115 (48.70%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSH--STLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 63
           F M  KG  PI P   SH  S  PP P +   +    +FGM PKGVPIPPSGPS RTS  
Sbjct: 33  FVMLPKGD-PIPPSGPSHRGSETPPPPHS-FARGPTLRFGMLPKGVPIPPSGPSQRTS-- 92

Query: 64  KYTPPPPPSTPSERP---RF---PWDAPCHRPNPPRYCVLLRPPPPSPHSRAPII 111
               PPPP  P  R    RF   P   P   P+ P +     PPPP   +R P +
Sbjct: 93  ---DPPPPPQPFARASVFRFGMLPKGDPI-PPSGPSHRGSETPPPPHSFARGPTL 139

HSP 2 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 48/119 (40.34%), Postives = 53/119 (44.54%), Query Frame = 1


Query: 3   KFDMYSKGRVPILPPVNSH--STLPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSA 62
           +F M  KG  PI P   SH  S  PP P +   +    +FGM PKG PIPPSGPS RTS 
Sbjct: 104 RFGMLPKGD-PIPPSGPSHRGSETPPPPHS-FARGPTLRFGMLPKGDPIPPSGPSQRTS- 163

Query: 63  GKYTPPPPPSTPSERP---RF---------PWDAPCHRPNPPRYCVLLRPPPPSPHSRA 108
                PPPP  P  R    RF         P   P HR +           PP PHS A
Sbjct: 164 ----DPPPPPQPFARASVFRFGMLPKGDPIPPSGPSHRGS---------ETPPPPHSFA 206

HSP 3 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 46/102 (45.10%), Postives = 52/102 (50.98%), Query Frame = 1


Query: 4   FDMYSKGRVPILPPVNSHSTL----PPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTS 63
           F ++ KG VPI P   S  T     PP P  +L       FGM+PKGVPIPPSGPS RTS
Sbjct: 36  FGVFPKG-VPIPPSGPSRRTSASPPPPPPIRLLN------FGMFPKGVPIPPSGPSRRTS 95

Query: 64  AGKYTPPPPPSTPSERPRFPWDAPCHRPNPPRYCVLLRPPPP 102
           A    PPPPP+       FP   P   P+ P       PPPP
Sbjct: 96  AS--PPPPPPTGLLNFGTFPKGVPI-PPSGPSRGTSASPPPP 127

[Close]

BLAST of ClCG04G004630 vs. NCBI nr
Match: gi|763769767|gb|KJB36982.1| (hypothetical protein B456_006G237900 [Gossypium raimondii])

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-07
Identity = 38/70 (54.29%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 3  KFDMYSKGRVPILPPVNSHST-LPPTPFTVLEKESKFKFGMYPKGVPIPPSGPSGRTSAG 62
          +F M  KG VPI P  +S S   PP   T L      KFGM PKGVPIPPSGPS  TS  
Sbjct: 26 RFGMLPKG-VPIPPSASSTSLPFPPMILTSLSLSKSLKFGMLPKGVPIPPSGPSRHTSDS 85

Query: 63 KYTPPPPPST 72
             PPPPP T
Sbjct: 86 --PPPPPPLT 92

The following BLAST results are available for this feature:

BLAST of ClCG04G004630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061FHV4_THECC	1.3e-08	45.10	Uncharacterized protein OS=Theobroma cacao GN=TCM_035454 PE=4 SV=1	[more]
A0A0D2NUV0_GOSRA	1.5e-07	54.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G237900 PE=4 SV=1	[more]
A0A0D2NUV0_GOSRA	5.7e+01	36.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G237900 PE=4 SV=1	[more]
B9RB38_RICCO	6.2e-06	41.51	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1510820 PE=4 SV=1	[more]
B9RB38_RICCO	6.2e-06	43.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1510820 PE=4 SV=1	[more]

BLAST of ClCG04G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778697779\|ref\|XP_011654399.1\|	4.6e-10	45.71	PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis sativus]	[more]
gi\|659083299\|ref\|XP_008442275.1\|	1.7e-09	47.57	PREDICTED: proline-rich protein HaeIII subfamily 1-like [Cucumis melo]	[more]
gi\|731399706\|ref\|XP_010653709.1\|	6.6e-09	42.02	PREDICTED: proline-rich protein HaeIII subfamily 1-like [Vitis vinifera]	[more]
gi\|731399706\|ref\|XP_010653709.1\|	6.2e-07	42.61	PREDICTED: proline-rich protein HaeIII subfamily 1-like [Vitis vinifera]	[more]
gi\|763769767\|gb\|KJB36982.1\|	2.1e-07	54.29	hypothetical protein B456_006G237900 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G004630.1	ClCG04G004630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G004630	Cla003081	Watermelon (97103) v1	wcgwmB255
ClCG04G004630	Cla97C04G071290	Watermelon (97103) v2	wcgwmbB200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G004630	Cucurbita pepo (Zucchini)	cpewcgB074
ClCG04G004630	Cucurbita pepo (Zucchini)	cpewcgB435
ClCG04G004630	Bottle gourd (USVL1VR-Ls)	lsiwcgB137
ClCG04G004630	Melon (DHL92) v3.6.1	medwcgB532
ClCG04G004630	Silver-seed gourd	carwcgB0570
ClCG04G004630	Silver-seed gourd	carwcgB1005
ClCG04G004630	Wax gourd	wcgwgoB388
ClCG04G004630	Cucurbita maxima (Rimu)	cmawcgB593
ClCG04G004630	Cucurbita maxima (Rimu)	cmawcgB771
ClCG04G004630	Cucurbita moschata (Rifu)	cmowcgB592
ClCG04G004630	Cucurbita moschata (Rifu)	cmowcgB772
ClCG04G004630	Melon (DHL92) v3.5.1	mewcgB533