ClCG04G004460 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G004460
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	auxin-regulated gene involved in organ size LENGTH=130
Location	CG_Chr04 : 17245180 .. 17245410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

mRNA sequence

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

Coding sequence (CDS)

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

Protein sequence

MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEHCVADGGDGHNSA

Homology

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BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARGOS_ORYSJ (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica GN=ARGOS PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEH 64
           +FS+ S+ +L+ V  SL+ILPLVLPPLPPPP +L+ VPV ++ LLL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSS 158

Query: 65  CVADGGDGHNSA 77
               GG G N A
Sbjct: 159 AGGGGGGGRNGA 170

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARGOS_ARATH (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ORS1_ARATH (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 9  RSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPA 62
          RSVA+L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: A0A0A0L0Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.8e-29
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 60
          MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEEHCVADGGDGHNSA 77
          AEEH   DGGD  NSA
Sbjct: 61 AEEHHETDGGDEDNSA 76

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: U5G936_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03620g PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 7  SLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQ 59
          SLRS+  ++V+ VSLL+LPLVLPPL PPP+L LF+PV IM LLLFLALSPSQ
Sbjct: 6  SLRSIVTMVVLTVSLLVLPLVLPPLSPPPLLFLFIPVFIMILLLFLALSPSQ 57

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: U5G5G3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s03610g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-12
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 61
           +F   +V +++V+ V LL+LPLVLPPLPPPP++LLFVPV IMSLL+FLA SPS++P
Sbjct: 74  YFKSIAVMVMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLP 129

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: A0A068UM56_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028963001 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 33/59 (55.93%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEE 64
          +F+ + + +++V  ++LL+LPLVLPPLPPPPVL+LFVPVL+++LLL+ A  PS+VP  E
Sbjct: 35 YFNAKGIGIMVVSTLALLLLPLVLPPLPPPPVLVLFVPVLLLALLLYFAFLPSKVPTLE 93

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: A0A0V0GQD7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-11
Identity = 31/60 (51.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 60
          M++   S R + +++++ ++LL+LPL+LPPLPPPP++LL VPVL++ LL+FLA +PSQ+P
Sbjct: 21 MLKNLSSSRVIFVMVILTITLLVLPLILPPLPPPPLMLLCVPVLLLILLVFLAFTPSQLP 80

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT2G44080.1 (AT2G44080.1 ARGOS-like)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT2G41230.1 (AT2G41230.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 9  RSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPA 62
          RSVA+L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT3G59900.1 (AT3G59900.1 auxin-regulated gene involved in organ size)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT2G41225.1 (AT2G41225.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-08
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 16 VVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLAL 55
          VV V L +LP VLPPLPPPP++L+ +PV++M +L++LA+
Sbjct: 6  VVMVLLAVLPAVLPPLPPPPMILMGIPVVLMLMLIYLAI 44

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|700199561|gb|KGN54719.1| (hypothetical protein Csa_4G432970 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 60
          MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEEHCVADGGDGHNSA 77
          AEEH   DGGD  NSA
Sbjct: 61 AEEHHETDGGDEDNSA 76

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|566174296|ref|XP_006380977.1| (hypothetical protein POPTR_0006s03620g [Populus trichocarpa])

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 7  SLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQ 59
          SLRS+  ++V+ VSLL+LPLVLPPL PPP+L LF+PV IM LLLFLALSPSQ
Sbjct: 6  SLRSIVTMVVLTVSLLVLPLVLPPLSPPPLLFLFIPVFIMILLLFLALSPSQ 57

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|566174294|ref|XP_006380976.1| (hypothetical protein POPTR_0006s03610g, partial [Populus trichocarpa])

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-12
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 61
           +F   +V +++V+ V LL+LPLVLPPLPPPP++LLFVPV IMSLL+FLA SPS++P
Sbjct: 74  YFKSIAVMVMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLP 129

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|661886828|emb|CDP09546.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 33/59 (55.93%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEE 64
          +F+ + + +++V  ++LL+LPLVLPPLPPPPVL+LFVPVL+++LLL+ A  PS+VP  E
Sbjct: 35 YFNAKGIGIMVVSTLALLLLPLVLPPLPPPPVLVLFVPVLLLALLLYFAFLPSKVPTLE 93

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|566208512|ref|XP_006373706.1| (hypothetical protein POPTR_0016s03660g [Populus trichocarpa])

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 35/60 (58.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSP-SQVPAEE 64
          +++ R + +++++ VS+L+LP VLPPLPPPP++LLFVPV+IMSLL+ LALSP SQ+P  E
Sbjct: 4  YYTTRFIIVMVMLTVSILVLPPVLPPLPPPPLVLLFVPVMIMSLLVLLALSPISQMPNVE 63

The following BLAST results are available for this feature:

BLAST of ClCG04G004460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARGOS_ORYSJ	1.1e-12	48.61	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
ARGOS_BRARP	2.7e-11	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
ARGOS_ARATH	5.9e-11	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=A...	[more]
ARL_ARATH	5.9e-11	58.49	ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1	[more]
ORS1_ARATH	5.9e-11	60.38	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1	[more]

BLAST of ClCG04G004460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7_CUCSA	9.8e-29	92.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432970 PE=4 SV=1	[more]
U5G936_POPTR	1.7e-12	73.08	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03620g PE=4 SV=1	[more]
U5G5G3_POPTR	3.7e-12	64.29	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s03610g P...	[more]
A0A068UM56_COFCA	1.1e-11	55.93	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028963001 PE=4 SV=1	[more]
A0A0V0GQD7_SOLCH	4.1e-11	51.67	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of ClCG04G004460 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44080.1	3.3e-12	58.49	ARGOS-like	[more]
AT2G41230.1	3.3e-12	60.38	unknown protein	[more]
AT3G59900.1	3.3e-12	62.26	auxin-regulated gene involved in organ size	[more]
AT2G41225.1	8.5e-08	56.41	unknown protein	[more]

BLAST of ClCG04G004460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199561\|gb\|KGN54719.1\|	1.4e-28	92.11	hypothetical protein Csa_4G432970 [Cucumis sativus]	[more]
gi\|566174296\|ref\|XP_006380977.1\|	2.4e-12	73.08	hypothetical protein POPTR_0006s03620g [Populus trichocarpa]	[more]
gi\|566174294\|ref\|XP_006380976.1\|	5.3e-12	64.29	hypothetical protein POPTR_0006s03610g, partial [Populus trichocarpa]	[more]
gi\|661886828\|emb\|CDP09546.1\|	1.6e-11	55.93	unnamed protein product [Coffea canephora]	[more]
gi\|566208512\|ref\|XP_006373706.1\|	7.7e-11	58.33	hypothetical protein POPTR_0016s03660g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G004460.1	ClCG04G004460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G004460	Bottle gourd (USVL1VR-Ls)	lsiwcgB143
ClCG04G004460	Melon (DHL92) v3.6.1	medwcgB524
ClCG04G004460	Watermelon (97103) v2	wcgwmbB200
ClCG04G004460	Wax gourd	wcgwgoB386
ClCG04G004460	Cucurbita maxima (Rimu)	cmawcgB588
ClCG04G004460	Cucurbita moschata (Rifu)	cmowcgB593
ClCG04G004460	Melon (DHL92) v3.5.1	mewcgB528
ClCG04G004460	Watermelon (97103) v1	wcgwmB255