ClCG04G004460 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G004460
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	auxin-regulated gene involved in organ size LENGTH=130
Location	CG_Chr04 : 17245180 .. 17245410 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

mRNA sequence

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

Coding sequence (CDS)

ATGGTGAGGGGATTTTTTAGTTTGAGATCGGTGGCAATGTTGATTGTTGTAGCGGTGTCTCTTTTGATATTGCCGCTTGTGCTGCCGCCGTTGCCGCCCCCACCGGTGCTGCTGCTGTTTGTTCCGGTGTTGATTATGTCGTTGCTTCTGTTCTTGGCGCTGTCGCCGTCACAGGTTCCGGCGGAGGAGCACTGTGTGGCTGACGGCGGCGACGGTCACAATTCGGCTTGA

Protein sequence

MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEHCVADGGDGHNSA

Homology

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BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARGOS_ORYSJ (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japonica GN=ARGOS PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEEH 64
           +FS+ S+ +L+ V  SL+ILPLVLPPLPPPP +L+ VPV ++ LLL LA  P+   +   
Sbjct: 99  YFSVESLLLLVCVTASLVILPLVLPPLPPPPSMLMLVPVAMLVLLLALAFMPTTTSSSSS 158

Query: 65  CVADGGDGHNSA 77
               GG G N A
Sbjct: 159 AGGGGGGGRNGA 170

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARGOS_BRARP (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis GN=ARGOS PE=2 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 71  YFSLESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPS 123

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARGOS_ARATH (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=ARGOS PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ARL_ARATH (ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of ClCG04G004460 vs. Swiss-Prot
Match: ORS1_ARATH (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.9e-11
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 9  RSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPA 62
          RSVA+L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: A0A0A0L0Y7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432970 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.8e-29
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 60
          MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEEHCVADGGDGHNSA 77
          AEEH   DGGD  NSA
Sbjct: 61 AEEHHETDGGDEDNSA 76

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: U5G936_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03620g PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 7  SLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQ 59
          SLRS+  ++V+ VSLL+LPLVLPPL PPP+L LF+PV IM LLLFLALSPSQ
Sbjct: 6  SLRSIVTMVVLTVSLLVLPLVLPPLSPPPLLFLFIPVFIMILLLFLALSPSQ 57

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: U5G5G3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s03610g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-12
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 61
           +F   +V +++V+ V LL+LPLVLPPLPPPP++LLFVPV IMSLL+FLA SPS++P
Sbjct: 74  YFKSIAVMVMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLP 129

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: A0A068UM56_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028963001 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 33/59 (55.93%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEE 64
          +F+ + + +++V  ++LL+LPLVLPPLPPPPVL+LFVPVL+++LLL+ A  PS+VP  E
Sbjct: 35 YFNAKGIGIMVVSTLALLLLPLVLPPLPPPPVLVLFVPVLLLALLLYFAFLPSKVPTLE 93

[Close]

BLAST of ClCG04G004460 vs. TrEMBL
Match: A0A0V0GQD7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-11
Identity = 31/60 (51.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 60
          M++   S R + +++++ ++LL+LPL+LPPLPPPP++LL VPVL++ LL+FLA +PSQ+P
Sbjct: 21 MLKNLSSSRVIFVMVILTITLLVLPLILPPLPPPPLMLLCVPVLLLILLVFLAFTPSQLP 80

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT2G44080.1 (AT2G44080.1 ARGOS-like)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPL+LPPLPPPP +LL +P+ IM LL+ LA  PS
Sbjct: 70  YFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPS 122

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT2G41230.1 (AT2G41230.1 unknown protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 9  RSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPA 62
          RSVA+L+ +++ LLILP  LPPLPPPP  LL +P+L+M LL+FLA SPS  P+
Sbjct: 28 RSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNEPS 80

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT3G59900.1 (AT3G59900.1 auxin-regulated gene involved in organ size)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS 58
           +FSL S+ +L+ +  SLLILPLVLPPLPPPP +LL VP+ IM LL+ LA  PS
Sbjct: 64  YFSLESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

[Close]

BLAST of ClCG04G004460 vs. TAIR10
Match: AT2G41225.1 (AT2G41225.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.5e-08
Identity = 22/39 (56.41%), Postives = 31/39 (79.49%), Query Frame = 1


Query: 16 VVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLAL 55
          VV V L +LP VLPPLPPPP++L+ +PV++M +L++LA+
Sbjct: 6  VVMVLLAVLPAVLPPLPPPPMILMGIPVVLMLMLIYLAI 44

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|700199561|gb|KGN54719.1| (hypothetical protein Csa_4G432970 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.4e-28
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 60
          MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPS+VP
Sbjct: 1  MVRGFFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSEVP 60

Query: 61 AEEHCVADGGDGHNSA 77
          AEEH   DGGD  NSA
Sbjct: 61 AEEHHETDGGDEDNSA 76

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|566174296|ref|XP_006380977.1| (hypothetical protein POPTR_0006s03620g [Populus trichocarpa])

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 38/52 (73.08%), Postives = 45/52 (86.54%), Query Frame = 1


Query: 7  SLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQ 59
          SLRS+  ++V+ VSLL+LPLVLPPL PPP+L LF+PV IM LLLFLALSPSQ
Sbjct: 6  SLRSIVTMVVLTVSLLVLPLVLPPLSPPPLLFLFIPVFIMILLLFLALSPSQ 57

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|566174294|ref|XP_006380976.1| (hypothetical protein POPTR_0006s03610g, partial [Populus trichocarpa])

HSP 1 Score: 78.6 bits (192), Expect = 5.3e-12
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 1


Query: 5   FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVP 61
           +F   +V +++V+ V LL+LPLVLPPLPPPP++LLFVPV IMSLL+FLA SPS++P
Sbjct: 74  YFKSIAVMVMVVLTVFLLVLPLVLPPLPPPPLVLLFVPVFIMSLLVFLAFSPSKLP 129

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|661886828|emb|CDP09546.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 33/59 (55.93%), Postives = 49/59 (83.05%), Query Frame = 1


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSPSQVPAEE 64
          +F+ + + +++V  ++LL+LPLVLPPLPPPPVL+LFVPVL+++LLL+ A  PS+VP  E
Sbjct: 35 YFNAKGIGIMVVSTLALLLLPLVLPPLPPPPVLVLFVPVLLLALLLYFAFLPSKVPTLE 93

[Close]

BLAST of ClCG04G004460 vs. NCBI nr
Match: gi|566208512|ref|XP_006373706.1| (hypothetical protein POPTR_0016s03660g [Populus trichocarpa])

HSP 1 Score: 74.7 bits (182), Expect = 7.7e-11
Identity = 35/60 (58.33%), Postives = 51/60 (85.00%), Query Frame = 1


Query: 5  FFSLRSVAMLIVVAVSLLILPLVLPPLPPPPVLLLFVPVLIMSLLLFLALSP-SQVPAEE 64
          +++ R + +++++ VS+L+LP VLPPLPPPP++LLFVPV+IMSLL+ LALSP SQ+P  E
Sbjct: 4  YYTTRFIIVMVMLTVSILVLPPVLPPLPPPPLVLLFVPVMIMSLLVLLALSPISQMPNVE 63

The following BLAST results are available for this feature:

BLAST of ClCG04G004460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ARGOS_ORYSJ	1.1e-12	48.61	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Oryza sativa subsp. japon...	[more]
ARGOS_BRARP	2.7e-11	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki...	[more]
ARGOS_ARATH	5.9e-11	62.26	Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Arabidopsis thaliana GN=A...	[more]
ARL_ARATH	5.9e-11	58.49	ARGOS-like protein OS=Arabidopsis thaliana GN=ARL PE=2 SV=1	[more]
ORS1_ARATH	5.9e-11	60.38	Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana GN=ORS1 PE=2 SV=1	[more]

BLAST of ClCG04G004460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Y7_CUCSA	9.8e-29	92.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G432970 PE=4 SV=1	[more]
U5G936_POPTR	1.7e-12	73.08	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s03620g PE=4 SV=1	[more]
U5G5G3_POPTR	3.7e-12	64.29	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0006s03610g P...	[more]
A0A068UM56_COFCA	1.1e-11	55.93	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028963001 PE=4 SV=1	[more]
A0A0V0GQD7_SOLCH	4.1e-11	51.67	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of ClCG04G004460 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44080.1	3.3e-12	58.49	ARGOS-like	[more]
AT2G41230.1	3.3e-12	60.38	unknown protein	[more]
AT3G59900.1	3.3e-12	62.26	auxin-regulated gene involved in organ size	[more]
AT2G41225.1	8.5e-08	56.41	unknown protein	[more]

BLAST of ClCG04G004460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199561\|gb\|KGN54719.1\|	1.4e-28	92.11	hypothetical protein Csa_4G432970 [Cucumis sativus]	[more]
gi\|566174296\|ref\|XP_006380977.1\|	2.4e-12	73.08	hypothetical protein POPTR_0006s03620g [Populus trichocarpa]	[more]
gi\|566174294\|ref\|XP_006380976.1\|	5.3e-12	64.29	hypothetical protein POPTR_0006s03610g, partial [Populus trichocarpa]	[more]
gi\|661886828\|emb\|CDP09546.1\|	1.6e-11	55.93	unnamed protein product [Coffea canephora]	[more]
gi\|566208512\|ref\|XP_006373706.1\|	7.7e-11	58.33	hypothetical protein POPTR_0016s03660g [Populus trichocarpa]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G004460.1	ClCG04G004460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G004460	Cucurbita maxima (Rimu)	cmawcgB588
ClCG04G004460	Cucurbita moschata (Rifu)	cmowcgB593
ClCG04G004460	Melon (DHL92) v3.5.1	mewcgB528
ClCG04G004460	Watermelon (97103) v1	wcgwmB255
ClCG04G004460	Bottle gourd (USVL1VR-Ls)	lsiwcgB143
ClCG04G004460	Melon (DHL92) v3.6.1	medwcgB524
ClCG04G004460	Watermelon (97103) v2	wcgwmbB200
ClCG04G004460	Wax gourd	wcgwgoB386