ClCG04G004140 (gene) Watermelon (Charleston Gray)

NameClCG04G004140
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr04 : 15770887 .. 15771855 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTCCATAAGGAAATTTTGGAGTTTCAAAAAGAAACTTCAATTGGTATGCAACAGTTGGCAAACCAAATTACTCAATTGGCCACCACGGTGAACAAGCTTGACACCCAAAGTGGTAAAATCTCAACCCAACCTGAGCCCCATGTGAGGAATGTAACTGTTGTAACTACTGTAAATCCATTTGATTTCCCTGAATCCTCTGAATTTATGAACTTTGTGACTAATAAAGAATCCAATGAATCATTTGGTTTTGATAAGAAATGACATAGCCCCGAACACCCACGAGCCTTCAACAGGTTAGTACTGATCCATTGAATCAGTCTGCTTTGAATGCTTACATTATGTTGCCCCTTTTCCAAGAAGATTCCTCAATCCTAAGAGGAATGAAGAAAAAGTACTCACTCAAACCCTTGGAATTGTGACTGCTAGCTTCCCACAGTGGGTCAAAAAGGAGGAAGTAATACATATAGTGCAGCAACCATGGGCACTCCAAGTAAACTCTCAGTGAAACACGACAATCCAAGTATGTTTTTCTTACCTTGCAAAATAGGTAAGAAGAAGTTGTTAGATGCAATAATTGACCTAGGAGCTTCTGTGAACATCATACATACATCGTTGTTTTATGAGCTTAGACTGTTAGATCTTTGTAGTACAAATGTGGTGGTTCAACTAGCAAACCCTAGTTTAACTAAGCCATTAGGATTTTTAAAAGATGTGTATGTGAATGTAGATGACTTAGTTTTCCTTGTTGATTTCTATGTCCTGAATTAATCTTGCTTTAAAAAAGATTGATGTAGGAGAAGGGTCCCTATCTATGGAATTTAATGGGGATGTTAAAAATTCTTTGTCTTGGATAATTTTGCTTCCATTAATTCTTTTGATTCCTGTCAGTTACTACCTTTGCAGGATAATGGTTCAGTAAATTCTGGAGAGATGGATGGAAAGGAGGAGTCGATCAACTCCTAG

mRNA sequence

ATGACATTCCATAAGGAAATTTTGGAGTTTCAAAAAGAAACTTCAATTGGTATGCAACAGTTGGCAAACCAAATTACTCAATTGGCCACCACGGTGAACAAGCTTGACACCCAAAGTGGTAAAATCTCAACCCAACCTGAGCCCCATGTGAGGAATGTAACTGTTGTAACTACTGTAAATCCATTTGATTTCCCTGAATCCTCTGAATTTATGAACTTTCTTAGACTGTTAGATCTTTGTAGTACAAATGTGGTGGTTCAACTAGCAAACCCTAGTTTAACTAAGCCATTAGGATTTTTAAAAGATGTGTATGTGAATGTAGATGACTTAGTTTTCCTTGTTGATTTCTATTTACTACCTTTGCAGGATAATGGTTCAGTAAATTCTGGAGAGATGGATGGAAAGGAGGAGTCGATCAACTCCTAG

Coding sequence (CDS)

ATGACATTCCATAAGGAAATTTTGGAGTTTCAAAAAGAAACTTCAATTGGTATGCAACAGTTGGCAAACCAAATTACTCAATTGGCCACCACGGTGAACAAGCTTGACACCCAAAGTGGTAAAATCTCAACCCAACCTGAGCCCCATGTGAGGAATGTAACTGTTGTAACTACTGTAAATCCATTTGATTTCCCTGAATCCTCTGAATTTATGAACTTTCTTAGACTGTTAGATCTTTGTAGTACAAATGTGGTGGTTCAACTAGCAAACCCTAGTTTAACTAAGCCATTAGGATTTTTAAAAGATGTGTATGTGAATGTAGATGACTTAGTTTTCCTTGTTGATTTCTATTTACTACCTTTGCAGGATAATGGTTCAGTAAATTCTGGAGAGATGGATGGAAAGGAGGAGTCGATCAACTCCTAG

Protein sequence

MTFHKEILEFQKETSIGMQQLANQITQLATTVNKLDTQSGKISTQPEPHVRNVTVVTTVNPFDFPESSEFMNFLRLLDLCSTNVVVQLANPSLTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVNSGEMDGKEESINS
BLAST of ClCG04G004140 vs. TrEMBL
Match: A0A151SXK9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_014995 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-06
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1

Query: 74  LRLLDLCSTNVVVQLANPSLTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVNS 130
           L++ DL  T+VV+QL N S  +PLG +KDV V V+DL+F  DFY+L ++D  S N+
Sbjct: 19  LQIGDLIPTSVVIQLENKSTVQPLGVVKDVLVKVEDLIFPTDFYILEMKDESSRNA 74

BLAST of ClCG04G004140 vs. NCBI nr
Match: gi|823241233|ref|XP_012453231.1| (PREDICTED: uncharacterized protein LOC105775248 [Gossypium raimondii])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 1

Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQSGKISTQPEPHVR-NVTVVTTVNPFDFPES 68
           ++Q+ T   +Q+L NQ+++L+  VN+L++Q GK+ +Q EP+ R NV+ +T  +     +S
Sbjct: 10  KYQQRTDASIQELTNQVSKLSMAVNRLESQ-GKLPSQTEPNPRLNVSAITLRSEKVLDKS 69

Query: 69  SEFMNFLRLLDLC-----------------------------------STNVVVQLANPS 128
               NF R   L                                     T V++QLA+ S
Sbjct: 70  LAMQNFSRNCALARGGNVGIKKAMCDLGASINVMSYHIYKLINVGHLKKTGVIIQLADRS 129

Query: 129 LTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVNSGEM 133
           +  P G L+DV V V++LVF  DFY++ ++D+ S NS ++
Sbjct: 130 VIYPEGLLEDVLVKVNELVFPADFYIINMEDDNSTNSSDI 168

BLAST of ClCG04G004140 vs. NCBI nr
Match: gi|747079588|ref|XP_011087002.1| (PREDICTED: uncharacterized protein LOC105168564 [Sesamum indicum])

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-07
Identity = 39/121 (32.23%), Postives = 69/121 (57.02%), Query Frame = 1

Query: 9   EFQKETSIGMQQLANQITQLATTVNKLDTQSGKISTQPEPHVRNVTVVTTVNPFDFPESS 68
           +FQ+ET   +Q + +Q++QLA+++++L++Q  K +        NV  +T           
Sbjct: 16  KFQQETRSSIQNVESQMSQLASSISRLESQGIKRAMYDLGASINVMPLT----------- 75

Query: 69  EFMNFLRLLDLCSTNVVVQLANPSLTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVN 128
                L +  L  T VV+QLA+ S+  P G L+DV V V++LVF  DF+++ ++++ S N
Sbjct: 76  -IFKSLNVGPLKETGVVIQLADRSIVYPEGVLEDVLVEVNELVFPADFFVIDMREDNSPN 124

Query: 129 S 130
           S
Sbjct: 136 S 124

BLAST of ClCG04G004140 vs. NCBI nr
Match: gi|1012348368|gb|KYP59559.1| (hypothetical protein KK1_014995 [Cajanus cajan])

HSP 1 Score: 59.7 bits (143), Expect = 4.8e-06
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1

Query: 74  LRLLDLCSTNVVVQLANPSLTKPLGFLKDVYVNVDDLVFLVDFYLLPLQDNGSVNS 130
           L++ DL  T+VV+QL N S  +PLG +KDV V V+DL+F  DFY+L ++D  S N+
Sbjct: 19  LQIGDLIPTSVVIQLENKSTVQPLGVVKDVLVKVEDLIFPTDFYILEMKDESSRNA 74

BLAST of ClCG04G004140 vs. NCBI nr
Match: gi|720095513|ref|XP_010246705.1| (PREDICTED: uncharacterized protein LOC104589924 [Nelumbo nucifera])

HSP 1 Score: 58.9 bits (141), Expect = 8.1e-06
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = 1

Query: 5   KEILE-FQK-ETSIGMQQLANQITQLATTVNKLDTQSGKISTQPEPHVRNVTVVTTVNPF 64
           K+ILE F+K E +I +     Q+ + A  + +L T   K+    +     + +  ++N  
Sbjct: 54  KDILETFRKVEVNIPLLDAVKQVPRYAKFLKELCTTKKKLKGNVKIERAMLDLEASINVM 113

Query: 65  DFPESSEFMNFLRLLDLCSTNVVVQLANPSLTKPLGFLKDVYVNVDDLVFLVDFYLLPLQ 124
             P S      L L  L  T V++QLA+ S T P G L+DV V V+DLVF VDFY++ ++
Sbjct: 114 --PHS--IYTTLNLGPLKETRVILQLADRSTTYPKGVLEDVLVQVNDLVFPVDFYVIDME 173

Query: 125 DNGSVNS 130
           ++ S NS
Sbjct: 174 EDNSSNS 176

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A151SXK9_CAJCA3.3e-0650.00Uncharacterized protein OS=Cajanus cajan GN=KK1_014995 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|823241233|ref|XP_012453231.1|2.4e-1030.00PREDICTED: uncharacterized protein LOC105775248 [Gossypium raimondii][more]
gi|747079588|ref|XP_011087002.1|4.3e-0732.23PREDICTED: uncharacterized protein LOC105168564 [Sesamum indicum][more]
gi|1012348368|gb|KYP59559.1|4.8e-0650.00hypothetical protein KK1_014995 [Cajanus cajan][more]
gi|720095513|ref|XP_010246705.1|8.1e-0634.65PREDICTED: uncharacterized protein LOC104589924 [Nelumbo nucifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G004140.1ClCG04G004140.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 18..38
scor

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None