ClCG04G003940 (gene) Watermelon (Charleston Gray)

Overview
NameClCG04G003940
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionF-box protein
LocationCG_Chr04 : 15220276 .. 15220608 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCCATTTTAGCTGCTAATTTCCCTTCTCTTTCTAACGTTATCGTCTCCTCTACCAACACATCATCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGTCGCCATCCCTCGTCGTCGTTGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

mRNA sequence

ATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCCATTTTAGCTGCTAATTTCCCTTCTCTTTCTAACGTTATCGTCTCCTCTACCAACACATCATCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGTCGCCATCCCTCGTCGTCGTTGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

Coding sequence (CDS)

ATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCCATTTTAGCTGCTAATTTCCCTTCTCTTTCTAACGTTATCGTCTCCTCTACCAACACATCATCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGTCGCCATCCCTCGTCGTCGTTGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

Protein sequence

MPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSSPISFRRLFNLGHIATTRRHPSSSLWLFRSLETHPFPLRPCLRRRHDLLP
Homology
[Close]
BLAST of ClCG04G003940 vs. Swiss-Prot
Match: FB336_ARATH (Probable F-box protein At5g04010 OS=Arabidopsis thaliana GN=NSFBx PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-08
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 1 

Query: 3   WEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSSP 62
           WE+L LVG ++DP++LA+ASCV  +WS   +S  LW+ + A      +  I       + 
Sbjct: 55  WEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGAKPAW 114

Query: 63  ISFRRLFNLGHIATTRR 80
           +S++RL +    A  RR
Sbjct: 115 LSYKRLISEAESAAKRR 131

[Close]
BLAST of ClCG04G003940 vs. TrEMBL
Match: A0A0A0LDE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + ++  TS 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSP 73

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
           +SFRRLF LG+IA  RR P+ S
Sbjct: 74 HVSFRRLFGLGYIAAARRRPAQS 95

[Close]
BLAST of ClCG04G003940 vs. TrEMBL
Match: W9RIU5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015511 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-18
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVL+LV E+L+PKTLAMASCVCKSWS++M+SNHLW+PI  ++FPSLSN +  S     
Sbjct: 20 PWEVLVLVSEYLEPKTLAMASCVCKSWSVSMSSNHLWKPICTSHFPSLSNHLPLS----- 79

Query: 62 PISFRRLFNLGHIATTRR 80
           + +RRL+ + H A+ RR
Sbjct: 80 -LPYRRLYAVAHAASLRR 91

[Close]
BLAST of ClCG04G003940 vs. TrEMBL
Match: H6VUS4_9ROSI (F-box protein OS=Citrus clementina PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-17
Identity = 45/78 (57.69%), Postives = 63/78 (80.77%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVL LV + LDPKTLA+ASCV KSW IAM+S++LW+PI ++++PSLSN+ ++     S
Sbjct: 11 PWEVLSLVAQHLDPKTLAIASCVSKSWYIAMSSDYLWQPICSSHYPSLSNLKLTD---PS 70

Query: 62 PISFRRLFNLGHIATTRR 80
           +S+RRLF++G+ AT RR
Sbjct: 71 DVSYRRLFSVGYSATKRR 85

[Close]
BLAST of ClCG04G003940 vs. TrEMBL
Match: I1JGE4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G191900 PE=4 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 43/78 (55.13%), Postives = 60/78 (76.92%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWE L+LV  +LDPKTLAMASCV KSW  +M+S+ +W+PILA +FPSLS +     +++ 
Sbjct: 5  PWEALILVATYLDPKTLAMASCVSKSWFSSMSSDIIWKPILATHFPSLSTL----PSSAP 64

Query: 62 PISFRRLFNLGHIATTRR 80
           +++RRLF++GH ATT R
Sbjct: 65 TVAYRRLFSMGHTATTHR 78

[Close]
BLAST of ClCG04G003940 vs. TrEMBL
Match: V7BI28_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G249000g PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.0e-16
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWE L+LV  +LDPKTL +ASCV KSW  +M+S+H+W+P+L  +FPSL+ +       SS
Sbjct: 5  PWEALVLVATYLDPKTLTIASCVSKSWLSSMSSDHVWKPVLTTHFPSLATL-------SS 64

Query: 62 PISFRRLFNLGHIATTRRH---PSSSLWL 88
           +S+RRLF +GH A  RR+   P  SL L
Sbjct: 65 AVSYRRLFAMGHAAAARRNQKPPKPSLSL 86

[Close]
BLAST of ClCG04G003940 vs. TAIR10
Match: AT5G04010.1 (AT5G04010.1 F-box family protein)

HSP 1 Score: 58.2 bits (139), Expect = 3.8e-09
Identity = 27/77 (35.06%), Postives = 41/77 (53.25%), Query Frame = 1 

Query: 3   WEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSSP 62
           WE+L LVG ++DP++LA+ASCV  +WS   +S  LW+ + A      +  I       + 
Sbjct: 55  WEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGAKPAW 114

Query: 63  ISFRRLFNLGHIATTRR 80
           +S++RL +    A  RR
Sbjct: 115 LSYKRLISEAESAAKRR 131

[Close]
BLAST of ClCG04G003940 vs. NCBI nr
Match: gi|659096654|ref|XP_008449214.1| (PREDICTED: probable F-box protein At5g04010 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 4.0e-24
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + S+  +S 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LASAPTSSP 73

Query: 62 PISFRRLFNLGHIATTRRHPS 83
          P+SFRRLF LG+IA  RR P+
Sbjct: 74 PVSFRRLFGLGYIAAARRRPA 93

[Close]
BLAST of ClCG04G003940 vs. NCBI nr
Match: gi|778688654|ref|XP_011652804.1| (PREDICTED: probable F-box protein At5g04010 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + ++  TS 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSP 73

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
           +SFRRLF LG+IA  RR P+ S
Sbjct: 74 HVSFRRLFGLGYIAAARRRPAQS 95

[Close]
BLAST of ClCG04G003940 vs. NCBI nr
Match: gi|700202953|gb|KGN58086.1| (hypothetical protein Csa_3G497390 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.0e-23
Identity = 56/83 (67.47%), Postives = 66/83 (79.52%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N + ++  TS 
Sbjct: 14 PWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-LATAPATSP 73

Query: 62 PISFRRLFNLGHIATTRRHPSSS 85
           +SFRRLF LG+IA  RR P+ S
Sbjct: 74 HVSFRRLFGLGYIAAARRRPAQS 95

[Close]
BLAST of ClCG04G003940 vs. NCBI nr
Match: gi|703123046|ref|XP_010102713.1| (hypothetical protein L484_015511 [Morus notabilis])

HSP 1 Score: 100.1 bits (248), Expect = 2.5e-18
Identity = 46/78 (58.97%), Postives = 61/78 (78.21%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVL+LV E+L+PKTLAMASCVCKSWS++M+SNHLW+PI  ++FPSLSN +  S     
Sbjct: 20 PWEVLVLVSEYLEPKTLAMASCVCKSWSVSMSSNHLWKPICTSHFPSLSNHLPLS----- 79

Query: 62 PISFRRLFNLGHIATTRR 80
           + +RRL+ + H A+ RR
Sbjct: 80 -LPYRRLYAVAHAASLRR 91

[Close]
BLAST of ClCG04G003940 vs. NCBI nr
Match: gi|1021487145|ref|XP_016186560.1| (PREDICTED: probable F-box protein At5g04010 [Arachis ipaensis])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-17
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1 

Query: 2  PWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSS 61
          PWEVL+LV ++LDPKTLA+ASCV  SWS +M+S+HLW P L A+FPSLSN+  SS +   
Sbjct: 13 PWEVLVLVAQYLDPKTLAIASCVSNSWSSSMSSDHLWIPFLTAHFPSLSNLPSSSADA-- 72

Query: 62 PISFRRLFNLGHIATTRR 80
           +S RRLF +GH A  RR
Sbjct: 73 -VSCRRLFGIGHSAVKRR 87

The following BLAST results are available for this feature:
BLAST of ClCG04G003940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB336_ARATH6.8e-0835.06Probable F-box protein At5g04010 OS=Arabidopsis thaliana GN=NSFBx PE=2 SV=1[more]
BLAST of ClCG04G003940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDE5_CUCSA1.4e-2367.47Uncharacterized protein OS=Cucumis sativus GN=Csa_3G497390 PE=4 SV=1[more]
W9RIU5_9ROSA1.7e-1858.97Uncharacterized protein OS=Morus notabilis GN=L484_015511 PE=4 SV=1[more]
H6VUS4_9ROSI5.6e-1757.69F-box protein OS=Citrus clementina PE=4 SV=1[more]
I1JGE4_SOYBN1.6e-1655.13Uncharacterized protein OS=Glycine max GN=GLYMA_02G191900 PE=4 SV=2[more]
V7BI28_PHAVU8.0e-1650.56Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G249000g PE=4 SV=1[more]
BLAST of ClCG04G003940 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04010.13.8e-0935.06 F-box family protein[more]
BLAST of ClCG04G003940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096654|ref|XP_008449214.1|4.0e-2469.14PREDICTED: probable F-box protein At5g04010 [Cucumis melo][more]
gi|778688654|ref|XP_011652804.1|2.0e-2367.47PREDICTED: probable F-box protein At5g04010 [Cucumis sativus][more]
gi|700202953|gb|KGN58086.1|2.0e-2367.47hypothetical protein Csa_3G497390 [Cucumis sativus][more]
gi|703123046|ref|XP_010102713.1|2.5e-1858.97hypothetical protein L484_015511 [Morus notabilis][more]
gi|1021487145|ref|XP_016186560.1|2.1e-1760.26PREDICTED: probable F-box protein At5g04010 [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042967 acyl-carrier-protein biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008080 N-acetyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003940.1ClCG04G003940.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPFAMPF12937F-box-likecoord: 2..39
score: 1.
IPR001810F-box domainSMARTSM00256fbox_2coord: 1..41
score: 6.
IPR001810F-box domainPROFILEPS50181FBOXcoord: 1..41
score: 9
IPR001810F-box domainunknownSSF81383F-box domaincoord: 1..55
score: 3.53
NoneNo IPR availableGENE3DG3DSA:1.20.1280.50coord: 1..52
score: 1.4
NoneNo IPR availablePANTHERPTHR12874FAMILY NOT NAMEDcoord: 2..72
score: 3.5
NoneNo IPR availablePANTHERPTHR12874:SF11SUBFAMILY NOT NAMEDcoord: 2..72
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG04G003940Cla005026Watermelon (97103) v1wcgwmB261
ClCG04G003940Cla97C04G070820Watermelon (97103) v2wcgwmbB200
ClCG04G003940CmaCh07G013480Cucurbita maxima (Rimu)cmawcgB762
ClCG04G003940CmoCh07G013880Cucurbita moschata (Rifu)cmowcgB763
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G003940Silver-seed gourdcarwcgB0460
ClCG04G003940Silver-seed gourdcarwcgB0509
ClCG04G003940Wax gourdwcgwgoB386
ClCG04G003940Cucurbita maxima (Rimu)cmawcgB592
ClCG04G003940Cucurbita moschata (Rifu)cmowcgB591
ClCG04G003940Cucurbita pepo (Zucchini)cpewcgB437
ClCG04G003940Bottle gourd (USVL1VR-Ls)lsiwcgB140
ClCG04G003940Bottle gourd (USVL1VR-Ls)lsiwcgB143
ClCG04G003940Cucumber (Gy14) v2cgybwcgB281