ClCG04G003890 (gene) Watermelon (Charleston Gray)

Overview
NameClCG04G003890
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr04 : 15032703 .. 15034828 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGATCTTGCTAGTGAGGCGGCTAAGGCTATTGAGATTTTTTGGGATGTGGCGAGATGGGAAGAGGCTTCTCTTCCGCAGAAATCTAGAGTATGTTGGTTGGAGTTGGGTGACCAGAATTCTGCTTTCTTCCACCATAGTGTGCAATCTAGGCAGGGAAGGAATGAGTTGTTCTCTATGATTGACAGTATAGGTGTCAGGCATTCCTCTCCTGAGAGTGTTGCACGGGTTACTGTAGATTTCTTCTAGGGGAGTTTGGGGTGCCAGCCTATTGGTTACAAGGACTTGACTGCTGAAATCTTTAAGATTGTTCAATTTCGTTAGCCTGAGGAATGTTGTCATGACTTATGTCATCCTATTATTGAGGATGAGATTCTGAAAGTTCTATTCTCTATGAAAAATGGTAAGGCTCCGAGTCCTGATGGTTTCTCGATGGGTTTCTTTAAGGCTGCTTGGTTTGTTGTGGGTGATGACTTCTGCTCTGCGGTGCGACACTTTTTTTATTTGTGCTATCTTCTTGCTAGGATTAATGCTACAACTATTACGCAAGTGTCAAAATGGGCTGGGGCAGAGAGGTTATTGAATTTCAGGCCCATTTCTTGCTGTAATGTGGTTTATAAATGCATCACCAAATTGTTATCTGACCGGTTACAAGGTTGGTTGCCTAAGTTTGTGAGCAGTAACCAGTCTGCTTTCGTCCCTAGTTGTTCCATCTCTGATAACATCCTCTTGTGTTGGAGCTTATGGGGGTGGGGGGGGTATCATTGGAATAAAGGTCCTACGAGGTGTGTTCTCAAGGTGGACTTACAAAAACCTTATGATTCTGTTCATTGGGACCTTCTACTTGGCGCCTAATTGGCCATTGGTACCTCGCTTCAGTTTGTGAGTTGGGTTAGAGCCTATATTACTTCTCCTAAGTTTTCCATTACGGTGAATGGCTCTCTAGAGGGGTATTTTCCTAGTAGGAAAGGGTTACATCAAGGTGATCCCTTATCTTTGTTTTTGTTTGTGATTGTTATGGAGGTCTTGTCGAGATTACTTAATCGACCGTTTGAGGGGTTCTGGTTTCACCACAAGTGTGAGAATGTTAGACTTACCCATCTTTCTTTTGCGGATGATCTGATGATTTTCTATGCGACTGAGTGGGGTTCTCTTCAGTTCTAGGATACGTTATGTTATTTTGAGAGGTTGGCTGGTGTCACACCCCCTCCCAGGTACCCTCTTAACCTAGGATAAAAGTGTGAGGACAACAGACACCGACCCTCTTACGGCATCCACTATCAACCTTATACCTTGACCAGCATCCAATAAGCAGATATACGCAATAATTGAACATCCAACTTTAACCAGACTTAAGCTATCATACAAACGTTGATTTACAGTATTAAAAAGATAACAAACCAAGAAATCTAGAGGTGTAAAAAGTGTTTATAGACTTAATTTTCAAAAATAAAAAACTAAAAATCAAATTGTTATCAAACAAGGCATAAAATATTAATTAATTTTGAGGTTTTAGAGCATACATTCTTGTAGTATCTATATTTATACTATATATAGAATGAGTTATAAAAGAGAATCTTTATATATACCTTTTGTCTTTACTATGCTTTTTTTGGAGGTAACTTTTCGAGTATAGGTGTCAGTTCAAAAAACAAAAAAGGAAACTTTTCCACTTTTTAGTATACAAAATAAATTTATATATTTCAAAATAAAAGTTTTAGGTTAAATAGGTGCAATTGATGTTTCCAATACGGGCAGGCTGGGATGGATTTTGCAAGATCATCTTGGGCAGGTTCAGCTTGCTGGTTTGAAGTTTATTCCCCATTGTAAGGAAGTGAAGGTTCTTGAAGCGATGACAATTTGCTTTGGGCTGGAAAGCATTTCATCTCTTTTTATCTCAAATATCTTTGTTGAGTTTGATTGCTTGGAGGTTGTTAAGTTATTGAATGGTGAGGCGATCGATATTTCTAAAGTCACTTTCTTTATTGGTGAGGCCCAAGAAAGAGGCGGTGAGCTTGGGTGGTTGCTTTTTCTCATGTTCTTCCTCACCAAAATGAATTGGACCATTGTGTTGCTCGTAAGGCATTGCAGGATCAGGAGTCTACCATTCCTTACCCTGA

mRNA sequence

ATGGATGTTGATCTTGCTAGTGAGGCGGCTAAGGCTATTGAGATTTTTTGGGATGTGGCGAGATGGGAAGAGGCTTCTCTTCCGCAGAAATCTAGAGTATGTTGGTTGGAGTTGGGTGACCAGAATTCTGCTTTCTTCCACCATAGTGTGCAATCTAGGCAGGGAAGGAATGAGTTGTTCTCTATGATTGACAGTATAGGTGTCAGGCATTCCTCTCCTGAGAGTGTTGCACGGGTTCAGCTTGCTGGTTTGAAGTTTATTCCCCATTGTAAGGAAGTGAAGGTTCTTGAAGCGATGACAATTTGCTTTGGGCTGGAAAGCATTTCATCTCTTTTTATCTCAAATATCTTTGTTGAGTTTGATTGCTTGGAGGTTGTTAAGTTATTGAATGGTGAGGCGATCGATATTTCTAAAGTCACTTTCTTTATTGGTGAGGCCCAAGAAAGAGGCGGATCAGGAGTCTACCATTCCTTACCCTGA

Coding sequence (CDS)

ATGGATGTTGATCTTGCTAGTGAGGCGGCTAAGGCTATTGAGATTTTTTGGGATGTGGCGAGATGGGAAGAGGCTTCTCTTCCGCAGAAATCTAGAGTATGTTGGTTGGAGTTGGGTGACCAGAATTCTGCTTTCTTCCACCATAGTGTGCAATCTAGGCAGGGAAGGAATGAGTTGTTCTCTATGATTGACAGTATAGGTGTCAGGCATTCCTCTCCTGAGAGTGTTGCACGGGTTCAGCTTGCTGGTTTGAAGTTTATTCCCCATTGTAAGGAAGTGAAGGTTCTTGAAGCGATGACAATTTGCTTTGGGCTGGAAAGCATTTCATCTCTTTTTATCTCAAATATCTTTGTTGAGTTTGATTGCTTGGAGGTTGTTAAGTTATTGAATGGTGAGGCGATCGATATTTCTAAAGTCACTTTCTTTATTGGTGAGGCCCAAGAAAGAGGCGGATCAGGAGTCTACCATTCCTTACCCTGA

Protein sequence

MDVDLASEAAKAIEIFWDVARWEEASLPQKSRVCWLELGDQNSAFFHHSVQSRQGRNELFSMIDSIGVRHSSPESVARVQLAGLKFIPHCKEVKVLEAMTICFGLESISSLFISNIFVEFDCLEVVKLLNGEAIDISKVTFFIGEAQERGGSGVYHSLP
Homology
[Close]
BLAST of ClCG04G003890 vs. NCBI nr
Match: gi|659133524|ref|XP_008466769.1| (PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 7.0e-14
Identity = 42/75 (56.00%), Postives = 54/75 (72.00%), Query Frame = 1 

Query: 5   LASEAAKAIEIFWDVARWEEASLPQKSRVCWLELGDQNSAFFHHSVQSRQGRNELFSMID 64
           L+ +A+ A E FW   R EEASL QKSR+ WL+LGDQN+ FFH SV+SR  RN L S++D
Sbjct: 499 LSRQASLATETFWTAVRLEEASLRQKSRIRWLKLGDQNTTFFHRSVRSRMSRNSLLSLVD 558

Query: 65  SIGVRHSSPESVARV 80
           S G R SS + VA++
Sbjct: 559 SDGSRVSSHDGVAQL 573

[Close]
BLAST of ClCG04G003890 vs. NCBI nr
Match: gi|659114595|ref|XP_008457134.1| (PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 8.6e-12
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 5   LASEAAKAIEIFWDVARWEEASLPQKSRVCWLELGDQNSAFFHHSVQSRQGRNELFSMID 64
           L+ +   A E FW   R EEASL QKSR+ WLELGDQN+AFFH SV+SR  RN L  ++D
Sbjct: 664 LSRQTGLATETFWTAVRLEEASLRQKSRIRWLELGDQNTAFFHRSVRSRMSRNSL--LVD 723

Query: 65  SIGVRHSSPESVARV 80
           S G R SS + V ++
Sbjct: 724 SDGSRVSSHDGVVQL 736

[Close]
BLAST of ClCG04G003890 vs. NCBI nr
Match: gi|659126448|ref|XP_008463187.1| (PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 2.5e-11
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 5   LASEAAKAIEIFWDVARWEEASLPQKSRVCWLELGDQNSAFFHHSVQSRQGRNELFSMID 64
           L+ +A+ A E FW   R EEASL QKSR+ WL+LGDQN+AFFH  V SR  RN L S++D
Sbjct: 628 LSRQASLATETFWTAVRLEEASLRQKSRIRWLKLGDQNTAFFHRFVYSRMSRNSLLSLVD 687

Query: 65  SIG 68
           S G
Sbjct: 688 SDG 690

[Close]
BLAST of ClCG04G003890 vs. NCBI nr
Match: gi|702512022|ref|XP_010040941.1| (PREDICTED: uncharacterized protein LOC104429841 [Eucalyptus grandis])

HSP 1 Score: 62.4 bits (150), Expect = 8.3e-07
Identity = 30/67 (44.78%), Postives = 45/67 (67.16%), Query Frame = 1 

Query: 16  FWDVARWEEASLPQKSRVCWLELGDQNSAFFHHSVQSRQGRNELFSMIDSIGVRHSSPES 75
           F D+ ++EE+   QKSRV WL+ GD+N+ FFHHSV  RQ RN + S+ D  G   ++P+ 
Sbjct: 688 FVDLQKFEESFYRQKSRVRWLKEGDRNTRFFHHSVSRRQVRNRILSVKDPSGTFITNPDQ 747

Query: 76  VARVQLA 83
           V ++ +A
Sbjct: 748 VPQIFVA 754

[Close]
BLAST of ClCG04G003890 vs. NCBI nr
Match: gi|727620646|ref|XP_010481131.1| (PREDICTED: uncharacterized protein LOC104759967 [Camelina sativa])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1 

Query: 5   LASEAAKAIEIFWDV-ARWEEASLPQKSRVCWLELGDQNSAFFHHSVQSRQGRNELFSMI 64
           L+S+  K   + W + A  EE+ L QKSR+CWLE GD+NS FFH  V SRQ +N +  ++
Sbjct: 164 LSSQLEKEAHMKWCILASAEESFLRQKSRICWLENGDKNSKFFHRVVLSRQAQNHILFLL 223

Query: 65  DSIGVRHSSPESVARVQLAGLKF 87
           D     H   ES   +Q   + F
Sbjct: 224 DD---NHQVVESKLGIQQLAVDF 243

The following BLAST results are available for this feature:
BLAST of ClCG04G003890 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659133524|ref|XP_008466769.1|7.0e-1456.00PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo][more]
gi|659114595|ref|XP_008457134.1|8.6e-1254.67PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo][more]
gi|659126448|ref|XP_008463187.1|2.5e-1158.73PREDICTED: uncharacterized protein LOC103501395 [Cucumis melo][more]
gi|702512022|ref|XP_010040941.1|8.3e-0744.78PREDICTED: uncharacterized protein LOC104429841 [Eucalyptus grandis][more]
gi|727620646|ref|XP_010481131.1|2.4e-0640.96PREDICTED: uncharacterized protein LOC104759967 [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG04G003890.1ClCG04G003890.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13456RVT_3coord: 77..137
score: 8.

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG04G003890Watermelon (97103) v2wcgwmbB200
ClCG04G003890Wax gourdwcgwgoB386
ClCG04G003890Cucurbita maxima (Rimu)cmawcgB592
ClCG04G003890Cucurbita maxima (Rimu)cmawcgB762
ClCG04G003890Cucurbita moschata (Rifu)cmowcgB591
ClCG04G003890Cucurbita moschata (Rifu)cmowcgB763
ClCG04G003890Watermelon (97103) v1wcgwmB261
ClCG04G003890Cucurbita pepo (Zucchini)cpewcgB073
ClCG04G003890Cucurbita pepo (Zucchini)cpewcgB437
ClCG04G003890Bottle gourd (USVL1VR-Ls)lsiwcgB140
ClCG04G003890Bottle gourd (USVL1VR-Ls)lsiwcgB143
ClCG04G003890Cucumber (Gy14) v2cgybwcgB281
ClCG04G003890Silver-seed gourdcarwcgB0460
ClCG04G003890Silver-seed gourdcarwcgB0509